Wall clock time and date at job start Tue Mar 31 2020 05:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42906 * 113.99766 * 2 1 4 4 C 1.53000 * 109.47108 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46875 * 55.00150 * 4 3 2 6 6 C 1.52996 * 109.47308 * 175.00066 * 4 3 2 7 7 N 1.46499 * 109.47307 * 185.31822 * 6 4 3 8 8 S 1.65602 * 119.99923 * 163.10244 * 7 6 4 9 9 O 1.42103 * 106.40235 * 311.45961 * 8 7 6 10 10 O 1.42101 * 106.40311 * 178.54221 * 8 7 6 11 11 C 1.76203 * 107.21845 * 64.99986 * 8 7 6 12 12 C 1.38653 * 119.87391 * 269.72514 * 11 8 7 13 13 C 1.38616 * 120.50077 * 179.72052 * 12 11 8 14 14 C 1.37646 * 120.24255 * 0.55745 * 13 12 11 15 15 C 1.40696 * 119.74838 * 359.72223 * 14 13 12 16 16 C 1.41392 * 120.24546 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00112 * 205.63851 * 16 15 14 18 18 C 1.39947 * 120.00167 * 25.62548 * 16 15 14 19 19 N 1.30827 * 119.99873 * 13.99104 * 18 16 15 20 20 Si 1.86794 * 120.00169 * 193.98205 * 18 16 15 21 21 H 1.48501 * 109.47013 * 90.00485 * 20 18 16 22 22 H 1.48497 * 109.47334 * 210.00153 * 20 18 16 23 23 H 1.48496 * 109.47200 * 330.00801 * 20 18 16 24 24 C 1.37594 * 119.87423 * 89.99867 * 11 8 7 25 25 O 1.42901 * 109.47049 * 295.00231 * 4 3 2 26 26 C 1.42907 * 113.99938 * 96.72232 * 25 4 3 27 27 H 1.09001 * 109.46792 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47110 * 299.99502 * 1 2 3 29 29 H 1.08999 * 109.47368 * 60.00047 * 1 2 3 30 30 H 1.09000 * 109.46835 * 60.00406 * 3 2 1 31 31 H 1.08999 * 109.46981 * 299.99928 * 3 2 1 32 32 H 1.08999 * 109.47201 * 65.31732 * 6 4 3 33 33 H 1.09000 * 109.47023 * 305.32282 * 6 4 3 34 34 H 0.96996 * 120.00134 * 343.10266 * 7 6 4 35 35 H 1.08004 * 119.75377 * 0.02562 * 12 11 8 36 36 H 1.07991 * 119.87873 * 180.25626 * 13 12 11 37 37 H 1.08001 * 120.12261 * 179.70690 * 14 13 12 38 38 H 0.96994 * 120.00319 * 179.97438 * 19 18 16 39 39 H 1.07999 * 120.12878 * 359.97438 * 24 11 8 40 40 H 1.08999 * 109.46899 * 64.31137 * 26 25 4 41 41 H 1.08999 * 109.46831 * 184.30759 * 26 25 4 42 42 H 1.09001 * 109.46835 * 304.30981 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 1 3.8507 0.5687 -0.8427 6 6 4.1572 2.5770 -0.1263 7 7 5.6112 2.4527 -0.2547 8 16 6.5047 3.7278 -0.8189 9 8 5.8542 4.1833 -1.9973 10 8 7.8623 3.3091 -0.7929 11 6 6.3621 5.0277 0.3621 12 6 5.3437 5.9609 0.2424 13 6 5.2160 6.9854 1.1674 14 6 6.1081 7.0933 2.2100 15 6 7.1489 6.1553 2.3382 16 6 8.0708 6.2559 3.4055 17 1 9.0632 5.8424 3.3026 18 6 7.6975 6.8914 4.5951 19 7 6.4366 7.1475 4.8321 20 14 8.9994 7.3739 5.8447 21 1 9.4805 8.7481 5.5527 22 1 8.4150 7.3335 7.2092 23 1 10.1379 6.4237 5.7654 24 6 7.2652 5.1160 1.3965 25 8 3.9658 0.5793 1.2201 26 6 4.1932 -0.8282 1.1222 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.9196 3.1626 0.7617 33 1 3.7558 3.0759 -1.0085 34 1 6.0506 1.6236 -0.0092 35 1 4.6416 5.8863 -0.5749 36 1 4.4165 7.7045 1.0668 37 1 6.0096 7.8951 2.9269 38 1 6.1778 7.5876 5.6568 39 1 8.0601 4.3903 1.4855 40 1 5.0180 -1.0160 0.4349 41 1 4.4427 -1.2251 2.1062 42 1 3.2923 -1.3168 0.7510 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619495837.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:12 Heat of formation + Delta-G solvation = -150.941316 kcal Electronic energy + Delta-G solvation = -26199.329296 eV Core-core repulsion = 22271.415891 eV Total energy + Delta-G solvation = -3927.913405 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.08540 -37.63083 -37.25891 -36.66978 -35.31685 -34.87960 -33.82153 -30.87623 -30.05952 -29.77132 -27.27845 -26.26070 -25.48260 -24.73128 -21.95397 -21.65260 -20.96799 -19.08411 -17.97910 -17.24208 -17.21121 -16.84527 -15.98215 -15.91393 -15.64664 -15.41655 -15.11189 -14.83996 -14.62066 -14.17712 -14.15269 -13.47745 -13.35090 -13.26789 -12.69940 -12.56179 -12.51730 -11.98358 -11.89051 -11.62070 -11.54466 -11.49577 -11.40419 -11.35056 -11.30155 -11.12962 -10.97365 -10.87875 -10.58872 -9.96002 -9.79166 -9.65556 -9.63708 -9.37418 -9.16493 -8.02394 -7.67698 -6.87996 -4.53108 1.01812 2.20528 2.64122 3.01507 3.05617 3.07757 3.32627 3.59522 3.72077 3.84863 4.24661 4.45614 4.73440 4.82685 4.86955 5.01100 5.07182 5.13109 5.22037 5.30229 5.38672 5.41939 5.45791 5.47715 5.53392 5.73739 5.76946 6.00238 6.07356 6.17243 6.66723 6.78328 6.84915 6.85780 7.05676 7.09689 7.19833 7.24466 7.38942 7.73670 7.83296 7.96250 8.42444 8.69135 8.73361 10.06485 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.012836 B = 0.003393 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.920884 B = 8250.848443 C = 8975.452767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.040 3.960 4 C 0.087 3.913 5 H 0.078 0.922 6 C 0.123 3.877 7 N -1.116 6.116 8 S 2.691 3.309 9 O -0.976 6.976 10 O -0.971 6.971 11 C -0.633 4.633 12 C -0.148 4.148 13 C -0.122 4.122 14 C -0.116 4.116 15 C 0.090 3.910 16 C -0.459 4.459 17 H 0.082 0.918 18 C 0.073 3.927 19 N -0.799 5.799 20 Si 0.914 3.086 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.119 4.119 25 O -0.372 6.372 26 C 0.030 3.970 27 H 0.084 0.916 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.415 0.585 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.128 0.872 38 H 0.282 0.718 39 H 0.112 0.888 40 H 0.038 0.962 41 H 0.083 0.917 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.697 -10.718 -5.495 15.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.038 4.038 4 C 0.027 3.973 5 H 0.096 0.904 6 C -0.004 4.004 7 N -0.874 5.874 8 S 2.787 3.213 9 O -0.966 6.966 10 O -0.962 6.962 11 C -0.725 4.725 12 C -0.170 4.170 13 C -0.142 4.142 14 C -0.136 4.136 15 C 0.087 3.913 16 C -0.488 4.488 17 H 0.100 0.900 18 C -0.144 4.144 19 N -0.424 5.424 20 Si 0.739 3.261 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.185 1.185 24 C -0.141 4.141 25 O -0.290 6.290 26 C -0.066 4.066 27 H 0.103 0.897 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.249 0.751 35 H 0.124 0.876 36 H 0.116 0.884 37 H 0.146 0.854 38 H 0.093 0.907 39 H 0.130 0.870 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.336 -10.536 -5.994 15.300 hybrid contribution 0.068 0.299 1.319 1.354 sum -9.268 -10.237 -4.675 14.579 Atomic orbital electron populations 1.22743 0.80926 1.02640 1.00153 1.87833 1.19845 1.27691 1.95506 1.23092 0.93677 0.85322 1.01675 1.22295 0.91530 0.94829 0.88638 0.90421 1.21248 0.79952 0.95825 1.03346 1.55428 1.15801 1.30734 1.85449 1.01598 0.72413 0.73124 0.74186 1.93507 1.76513 1.81315 1.45277 1.93540 1.33131 1.82039 1.87466 1.29704 1.07427 1.18157 1.17212 1.20085 0.98608 0.97963 1.00310 1.20820 0.99321 0.98135 0.95882 1.21715 0.96071 0.98985 0.96787 1.17701 0.92486 0.89615 0.91547 1.19636 0.99909 1.32140 0.97155 0.89957 1.25929 0.95995 0.93273 0.99240 1.69754 1.16717 1.30975 1.24971 0.86200 0.81142 0.79973 0.78815 1.19223 1.20216 1.18461 1.20803 0.98438 0.99091 0.95727 1.87978 1.87457 1.21672 1.31933 1.22858 0.99882 0.81562 1.02320 0.89744 0.93885 0.94031 0.91675 0.91849 0.89997 0.88900 0.75078 0.87613 0.88392 0.85444 0.90654 0.87018 0.94308 0.89894 0.92872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -4.12 9.34 -40.08 -0.37 -4.50 16 3 C 0.04 0.41 5.60 37.16 0.21 0.62 16 4 C 0.09 1.01 2.58 -26.73 -0.07 0.94 16 5 H 0.08 0.82 7.74 -51.93 -0.40 0.42 16 6 C 0.12 1.61 5.90 -4.04 -0.02 1.59 16 7 N -1.12 -16.47 5.96 -10.62 -0.06 -16.53 16 8 S 2.69 49.99 5.74 -107.50 -0.62 49.37 16 9 O -0.98 -19.31 16.71 -57.17 -0.96 -20.26 16 10 O -0.97 -20.37 17.27 -57.17 -0.99 -21.35 16 11 C -0.63 -13.73 5.94 -39.66 -0.24 -13.97 16 12 C -0.15 -3.16 9.53 -39.29 -0.37 -3.54 16 13 C -0.12 -2.71 10.02 -39.66 -0.40 -3.11 16 14 C -0.12 -2.88 8.69 -38.87 -0.34 -3.21 16 15 C 0.09 2.33 5.58 -106.83 -0.60 1.74 16 16 C -0.46 -11.84 9.07 -37.74 -0.34 -12.18 16 17 H 0.08 2.05 7.88 -52.49 -0.41 1.64 16 18 C 0.07 1.77 5.21 -17.34 -0.09 1.68 16 19 N -0.80 -19.79 10.81 55.55 0.60 -19.19 16 20 Si 0.91 18.22 29.58 -169.99 -5.03 13.19 16 21 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 22 H -0.28 -5.40 7.11 56.52 0.40 -4.99 16 23 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 24 C -0.12 -2.88 9.26 -38.87 -0.36 -3.24 16 25 O -0.37 -4.89 10.12 -40.08 -0.41 -5.29 16 26 C 0.03 0.31 10.69 101.05 1.08 1.39 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.09 1.09 7.71 -51.93 -0.40 0.69 16 34 H 0.42 5.46 8.52 -34.47 -0.29 5.17 16 35 H 0.11 1.99 7.59 -52.48 -0.40 1.59 16 36 H 0.10 1.89 8.06 -52.49 -0.42 1.46 16 37 H 0.13 3.23 6.10 -52.49 -0.32 2.91 16 38 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 39 H 0.11 2.60 7.60 -52.49 -0.40 2.20 16 40 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.05 0.53 6.88 -51.93 -0.36 0.18 16 LS Contribution 367.43 15.07 5.54 5.54 Total: -1.00 -31.49 367.43 -8.64 -40.13 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -5.92 Total: 8.84 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: -0.43 Total: -29.94 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.54 Total: -35.72 kcal Atomic # 8 Polarization: -48.68 SS G_CDS: -2.72 Total: -51.41 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Atomic # 16 Polarization: 49.99 SS G_CDS: -0.62 Total: 49.37 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.49 -8.64 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619495837.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.810 kcal (2) G-P(sol) polarization free energy of solvation -31.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds