Wall clock time and date at job start Tue Mar 31 2020 05:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86798 * 119.99882 * 2 1 4 4 H 1.48508 * 109.46803 * 274.69361 * 3 2 1 5 5 H 1.48504 * 109.47434 * 34.68926 * 3 2 1 6 6 H 1.48491 * 109.47257 * 154.69529 * 3 2 1 7 7 C 1.39943 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00213 * 197.85140 * 7 2 1 9 9 C 1.41400 * 119.99766 * 17.86608 * 7 2 1 10 10 C 1.40736 * 120.24711 * 24.37712 * 9 7 2 11 11 C 1.37595 * 119.74477 * 179.97438 * 10 9 7 12 12 C 1.38656 * 120.24798 * 0.26968 * 11 10 9 13 13 C 1.38612 * 120.50133 * 359.45447 * 12 11 10 14 14 S 1.76203 * 119.87590 * 180.29944 * 13 12 11 15 15 O 1.42095 * 106.40382 * 23.78825 * 14 13 12 16 16 O 1.42105 * 106.40401 * 156.70950 * 14 13 12 17 17 N 1.65596 * 107.21688 * 270.24830 * 14 13 12 18 18 C 1.46493 * 120.00097 * 65.00046 * 17 14 13 19 19 C 1.53009 * 109.47215 * 164.99852 * 18 17 14 20 20 C 1.53008 * 109.46983 * 179.97438 * 19 18 17 21 21 O 1.42895 * 109.46846 * 180.02562 * 20 19 18 22 22 C 1.42903 * 113.99978 * 179.97438 * 21 20 19 23 23 C 1.53000 * 109.46906 * 180.02562 * 22 21 20 24 24 O 1.42895 * 109.47517 * 65.00060 * 23 22 21 25 25 C 1.37632 * 120.24885 * 0.54791 * 13 12 11 26 26 H 0.97002 * 120.00124 * 359.97438 * 1 2 3 27 27 H 1.08001 * 120.12314 * 0.02562 * 10 9 7 28 28 H 1.08001 * 119.87756 * 179.97438 * 11 10 9 29 29 H 1.08005 * 119.74884 * 179.72146 * 12 11 10 30 30 H 0.97003 * 120.00197 * 245.00058 * 17 14 13 31 31 H 1.08999 * 109.47073 * 284.99959 * 18 17 14 32 32 H 1.08998 * 109.47374 * 45.00315 * 18 17 14 33 33 H 1.08999 * 109.47187 * 300.00037 * 19 18 17 34 34 H 1.08998 * 109.46571 * 59.99972 * 19 18 17 35 35 H 1.08999 * 109.47216 * 300.00052 * 20 19 18 36 36 H 1.08994 * 109.46706 * 60.00065 * 20 19 18 37 37 H 1.08994 * 109.46997 * 300.00265 * 22 21 20 38 38 H 1.09001 * 109.46568 * 59.99919 * 22 21 20 39 39 H 1.09004 * 109.46955 * 185.00507 * 23 22 21 40 40 H 1.09000 * 109.47098 * 304.99848 * 23 22 21 41 41 H 0.96695 * 114.00262 * 179.97438 * 24 23 22 42 42 H 1.08005 * 120.12983 * 179.75554 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3905 2.1037 -1.3955 5 1 1.4928 2.6221 0.7968 6 1 3.5858 1.4136 0.5984 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2343 0.2872 9 6 1.3521 -2.4071 -0.3746 10 6 0.2207 -2.3626 -1.2105 11 6 -0.4092 -3.5320 -1.5695 12 6 0.0634 -4.7506 -1.1065 13 6 1.1802 -4.8068 -0.2875 14 16 1.7713 -6.3649 0.2850 15 8 1.3103 -7.3352 -0.6450 16 8 3.1447 -6.1817 0.6006 17 7 1.0015 -6.6855 1.7157 18 6 -0.4484 -6.8939 1.7367 19 6 -0.8531 -7.5294 3.0684 20 6 -2.3675 -7.7464 3.0906 21 8 -2.7455 -8.3394 4.3346 22 6 -4.1478 -8.5849 4.4591 23 6 -4.4357 -9.2168 5.8224 24 8 -4.1224 -8.2818 6.8566 25 6 1.8261 -3.6498 0.0845 26 1 -0.4850 0.8401 0.0004 27 1 -0.1511 -1.4142 -1.5693 28 1 -1.2779 -3.5003 -2.2105 29 1 -0.4400 -5.6632 -1.3898 30 1 1.5107 -6.7354 2.5399 31 1 -0.9548 -5.9355 1.6227 32 1 -0.7324 -7.5546 0.9177 33 1 -0.3466 -8.4878 3.1825 34 1 -0.5690 -6.8686 3.8874 35 1 -2.8736 -6.7878 2.9768 36 1 -2.6519 -8.4069 2.2715 37 1 -4.6904 -7.6435 4.3734 38 1 -4.4694 -9.2630 3.6686 39 1 -5.4904 -9.4855 5.8828 40 1 -3.8253 -10.1116 5.9444 41 1 -4.2813 -8.6157 7.7501 42 1 2.6938 -3.6955 0.7260 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619495940.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:39 Heat of formation + Delta-G solvation = -164.822352 kcal Electronic energy + Delta-G solvation = -25237.380516 eV Core-core repulsion = 21308.865184 eV Total energy + Delta-G solvation = -3928.515332 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -38.56997 -37.64613 -36.90834 -36.64149 -35.68390 -35.29334 -33.85322 -31.61729 -30.08412 -29.79487 -29.42955 -25.50434 -24.91397 -22.79428 -21.97533 -21.65478 -20.97295 -19.05602 -18.00888 -17.97169 -17.13019 -16.89968 -16.30612 -15.94436 -15.72554 -15.22125 -15.00008 -14.92587 -14.65609 -14.32483 -14.12558 -13.47908 -13.36718 -13.23009 -12.66691 -12.58734 -12.33119 -11.91527 -11.68504 -11.60930 -11.53718 -11.40579 -11.38747 -11.29930 -11.20415 -11.10145 -11.00124 -10.88836 -10.60256 -10.39979 -9.79603 -9.78916 -9.66468 -9.36592 -9.15071 -8.04838 -7.71494 -6.93670 -4.54271 1.03111 2.18964 2.62326 2.99947 3.04615 3.06047 3.30468 3.66309 3.82653 3.90560 4.24660 4.42874 4.70585 4.81748 4.85570 4.88845 4.94669 5.05239 5.17095 5.23208 5.35850 5.40056 5.40469 5.48141 5.63666 5.80259 6.03825 6.05032 6.16370 6.21879 6.65185 6.75394 6.84089 6.97890 7.02579 7.19213 7.24059 7.29913 7.37837 7.71799 7.80576 7.93667 8.39783 8.66235 8.71131 10.01772 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.011301 B = 0.002811 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.967922 B = 9960.218247 C =11412.532018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.075 3.925 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.460 4.460 8 H 0.083 0.917 9 C 0.091 3.909 10 C -0.119 4.119 11 C -0.121 4.121 12 C -0.150 4.150 13 C -0.632 4.632 14 S 2.691 3.309 15 O -0.976 6.976 16 O -0.972 6.972 17 N -1.121 6.121 18 C 0.122 3.878 19 C -0.123 4.123 20 C 0.062 3.938 21 O -0.381 6.381 22 C 0.060 3.940 23 C 0.078 3.922 24 O -0.566 6.566 25 C -0.124 4.124 26 H 0.283 0.717 27 H 0.125 0.875 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.414 0.586 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.378 0.622 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.084 -12.634 8.258 17.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.489 4.489 8 H 0.101 0.899 9 C 0.087 3.913 10 C -0.138 4.138 11 C -0.140 4.140 12 C -0.171 4.171 13 C -0.723 4.723 14 S 2.787 3.213 15 O -0.966 6.966 16 O -0.963 6.963 17 N -0.879 5.879 18 C -0.005 4.005 19 C -0.162 4.162 20 C -0.015 4.015 21 O -0.301 6.301 22 C -0.016 4.016 23 C 0.000 4.000 24 O -0.371 6.371 25 C -0.145 4.145 26 H 0.094 0.906 27 H 0.143 0.857 28 H 0.116 0.884 29 H 0.124 0.876 30 H 0.248 0.752 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.225 0.775 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.481 -12.713 7.333 16.951 hybrid contribution -0.399 1.191 0.643 1.411 sum -8.879 -11.523 7.976 16.590 Atomic orbital electron populations 1.69782 1.07654 1.29600 1.34854 1.25940 0.94792 1.01576 0.92029 0.86222 0.80649 0.80208 0.79279 1.19218 1.20175 1.18365 1.19645 0.98412 0.90961 1.39871 0.89852 1.17701 0.91805 0.92024 0.89741 1.21639 0.97659 0.97166 0.97370 1.20806 0.99422 0.93155 1.00638 1.20080 0.97124 0.97276 1.02664 1.29739 1.09719 1.18121 1.14766 1.01586 0.72777 0.74651 0.72292 1.93506 1.82243 1.59503 1.61330 1.93540 1.31529 1.87331 1.83869 1.55523 1.16473 1.89092 1.26773 1.21089 0.80141 1.01096 0.98128 1.21648 0.94342 1.02450 0.97797 1.22435 0.95712 0.97473 0.85907 1.87918 1.22704 1.82362 1.37073 1.22532 0.83299 1.00148 0.95662 1.22195 0.98670 0.91929 0.87212 1.86589 1.90183 1.42720 1.17580 1.20788 1.00494 0.91605 1.01635 0.90591 0.85746 0.88399 0.87615 0.75202 0.91001 0.90270 0.90398 0.90172 0.92629 0.92894 0.92450 0.91841 0.92236 0.92789 0.77526 0.87009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.53 10.95 55.55 0.61 -18.92 16 2 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 3 Si 0.91 18.08 29.59 -169.99 -5.03 13.04 16 4 H -0.27 -5.24 7.11 56.52 0.40 -4.83 16 5 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.46 -11.80 9.05 -37.74 -0.34 -12.14 16 8 H 0.08 2.07 7.91 -52.49 -0.41 1.65 16 9 C 0.09 2.34 5.58 -106.82 -0.60 1.75 16 10 C -0.12 -2.94 8.70 -38.87 -0.34 -3.27 16 11 C -0.12 -2.68 10.02 -39.66 -0.40 -3.08 16 12 C -0.15 -3.21 9.53 -39.29 -0.37 -3.58 16 13 C -0.63 -13.69 5.94 -39.66 -0.24 -13.92 16 14 S 2.69 50.13 5.73 -107.50 -0.62 49.51 16 15 O -0.98 -19.65 16.74 -57.17 -0.96 -20.61 16 16 O -0.97 -20.40 17.27 -57.17 -0.99 -21.39 16 17 N -1.12 -16.16 6.00 -10.61 -0.06 -16.23 16 18 C 0.12 1.56 6.22 -4.04 -0.03 1.54 16 19 C -0.12 -1.36 5.73 -26.72 -0.15 -1.51 16 20 C 0.06 0.65 5.94 37.16 0.22 0.87 16 21 O -0.38 -4.48 10.31 -40.08 -0.41 -4.89 16 22 C 0.06 0.53 6.32 37.16 0.23 0.77 16 23 C 0.08 0.57 7.43 37.16 0.28 0.85 16 24 O -0.57 -5.21 13.62 -40.08 -0.55 -5.75 16 25 C -0.12 -2.97 9.26 -38.87 -0.36 -3.33 16 26 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 27 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 28 H 0.10 1.89 8.06 -52.49 -0.42 1.46 16 29 H 0.11 2.01 7.61 -52.48 -0.40 1.61 16 30 H 0.41 5.06 8.65 -34.47 -0.30 4.76 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.08 0.98 7.75 -51.93 -0.40 0.57 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.38 1.58 9.12 45.56 0.42 2.00 16 42 H 0.11 2.58 7.60 -52.48 -0.40 2.18 16 LS Contribution 370.82 15.07 5.59 5.59 Total: -1.00 -33.23 370.82 -9.78 -43.01 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -5.18 Total: 10.00 kcal Atomic # 6 Polarization: -31.18 SS G_CDS: -2.18 Total: -33.36 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.54 Total: -35.15 kcal Atomic # 8 Polarization: -49.74 SS G_CDS: -2.90 Total: -52.64 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 16 Polarization: 50.13 SS G_CDS: -0.62 Total: 49.51 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.23 -9.78 -43.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619495940.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.810 kcal (2) G-P(sol) polarization free energy of solvation -33.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds