Wall clock time and date at job start Tue Mar 31 2020 05:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46501 * 119.99998 * 2 1 4 4 C 1.53000 * 109.47355 * 275.00063 * 3 2 1 5 5 O 1.42905 * 109.47130 * 64.99562 * 4 3 2 6 6 C 1.42896 * 114.00197 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47442 * 180.02562 * 6 5 4 8 8 O 1.42906 * 109.47178 * 64.99673 * 7 6 5 9 9 S 1.65600 * 120.00157 * 180.02562 * 2 1 3 10 10 O 1.42096 * 106.39804 * 336.45456 * 9 2 1 11 11 O 1.42101 * 106.40093 * 203.54198 * 9 2 1 12 12 C 1.76194 * 107.21812 * 89.99773 * 9 2 1 13 13 C 1.38662 * 119.87943 * 270.29400 * 12 9 2 14 14 C 1.38613 * 120.50337 * 180.26219 * 13 12 9 15 15 C 1.37635 * 120.24644 * 359.44170 * 14 13 12 16 16 C 1.40700 * 119.74734 * 0.27966 * 15 14 13 17 17 C 1.41393 * 120.24808 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00329 * 204.39358 * 17 16 15 19 19 C 1.39942 * 119.99793 * 24.38823 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.86190 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.85679 * 19 17 16 22 22 H 1.48504 * 109.46865 * 90.00477 * 21 19 17 23 23 H 1.48493 * 109.47164 * 210.00257 * 21 19 17 24 24 H 1.48499 * 109.47067 * 330.00626 * 21 19 17 25 25 C 1.37597 * 119.87678 * 90.00554 * 12 9 2 26 26 H 1.09003 * 109.47209 * 269.99805 * 1 2 3 27 27 H 1.09002 * 109.47318 * 29.99844 * 1 2 3 28 28 H 1.09002 * 109.47126 * 149.99656 * 1 2 3 29 29 H 1.09001 * 109.46876 * 34.99891 * 3 2 1 30 30 H 1.08996 * 109.47195 * 155.00042 * 3 2 1 31 31 H 1.08997 * 109.47217 * 184.99784 * 4 3 2 32 32 H 1.09001 * 109.47191 * 305.00451 * 4 3 2 33 33 H 1.09004 * 109.47038 * 299.99974 * 6 5 4 34 34 H 1.08994 * 109.47393 * 60.00042 * 6 5 4 35 35 H 1.08993 * 109.47220 * 184.99657 * 7 6 5 36 36 H 1.08997 * 109.46921 * 305.00212 * 7 6 5 37 37 H 0.96694 * 114.00117 * 180.02562 * 8 7 6 38 38 H 1.07998 * 119.74547 * 0.02562 * 13 12 9 39 39 H 1.07991 * 119.87429 * 179.72331 * 14 13 12 40 40 H 1.07998 * 120.12988 * 180.25464 * 15 14 13 41 41 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 42 42 H 1.08005 * 120.12756 * 0.03422 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3436 1.7733 -1.4370 5 8 1.0529 2.0819 -1.9671 6 6 1.0769 2.5639 -3.3121 7 6 -0.3514 2.8608 -3.7732 8 8 -0.8893 3.9333 -2.9968 9 16 2.2930 -1.4341 -0.0006 10 8 1.4113 -2.4066 0.5435 11 8 3.5759 -1.1569 0.5440 12 6 2.5537 -1.8851 -1.6838 13 6 1.6118 -2.6579 -2.3458 14 6 1.8064 -3.0247 -3.6683 15 6 2.9339 -2.6147 -4.3427 16 6 3.8937 -1.8254 -3.6829 17 6 5.0562 -1.3988 -4.3655 18 1 5.9488 -1.1522 -3.8098 19 6 5.0501 -1.2963 -5.7611 20 7 3.9143 -1.2485 -6.4086 21 14 6.6638 -1.2274 -6.6997 22 1 7.0912 -2.6055 -7.0511 23 1 6.4806 -0.4342 -7.9416 24 1 7.7023 -0.5879 -5.8525 25 6 3.6884 -1.4640 -2.3383 26 1 -0.3634 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6500 2.0043 0.5894 30 1 3.1857 1.1177 0.4343 31 1 2.9639 2.6695 -1.4461 32 1 2.8118 1.0011 -2.0474 33 1 1.6711 3.4765 -3.3605 34 1 1.5187 1.8079 -3.9611 35 1 -0.3421 3.1434 -4.8258 36 1 -0.9681 1.9719 -3.6410 37 1 -1.7946 4.1757 -3.2349 38 1 0.7216 -2.9797 -1.8258 39 1 1.0683 -3.6306 -4.1726 40 1 3.0816 -2.8982 -5.3743 41 1 3.9101 -1.1771 -7.3760 42 1 4.4189 -0.8586 -1.8222 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619715151.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:17 Heat of formation + Delta-G solvation = -150.683482 kcal Electronic energy + Delta-G solvation = -27274.560274 eV Core-core repulsion = 23346.658049 eV Total energy + Delta-G solvation = -3927.902224 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -38.24383 -37.65780 -36.76889 -36.60624 -35.44607 -35.24490 -33.88041 -30.43221 -30.09508 -29.80758 -28.60531 -25.51990 -25.43069 -22.42795 -22.32196 -21.73398 -21.01502 -18.64650 -17.97234 -17.61755 -17.16498 -16.34008 -16.08871 -15.92031 -15.45631 -15.10261 -14.86684 -14.57737 -14.31778 -13.95421 -13.65298 -13.45531 -13.32492 -12.70714 -12.63288 -12.60487 -12.11250 -11.98634 -11.89518 -11.59780 -11.50228 -11.42410 -11.40616 -11.31404 -11.02530 -10.98162 -10.89698 -10.78655 -10.63082 -10.08548 -9.79413 -9.60961 -9.39649 -9.34293 -8.70625 -8.03166 -7.73291 -6.97073 -4.57620 1.01680 2.18348 2.59761 2.96580 3.00460 3.03746 3.50306 3.79021 3.83181 4.25513 4.27558 4.40420 4.88945 5.02742 5.13496 5.22738 5.28468 5.37038 5.47030 5.55197 5.62167 5.74612 5.82350 5.84566 5.86818 6.00268 6.11246 6.14368 6.19850 6.32029 6.61173 6.71462 6.75436 6.93744 7.02365 7.19280 7.36218 7.39986 7.57964 7.70449 7.77510 7.90972 8.36962 8.63406 8.68523 9.98159 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.009478 B = 0.005424 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.384959 B = 5161.106377 C = 6837.542103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.996 5.996 3 C 0.123 3.877 4 C 0.033 3.967 5 O -0.374 6.374 6 C 0.061 3.939 7 C 0.080 3.920 8 O -0.568 6.568 9 S 2.684 3.316 10 O -0.973 6.973 11 O -0.972 6.972 12 C -0.629 4.629 13 C -0.144 4.144 14 C -0.121 4.121 15 C -0.118 4.118 16 C 0.093 3.907 17 C -0.461 4.461 18 H 0.082 0.918 19 C 0.076 3.924 20 N -0.795 5.795 21 Si 0.910 3.090 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.260 1.260 25 C -0.128 4.128 26 H 0.049 0.951 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.374 0.626 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.124 0.876 41 H 0.283 0.717 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.827 7.410 2.819 10.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.833 5.833 3 C -0.003 4.003 4 C -0.045 4.045 5 O -0.293 6.293 6 C -0.016 4.016 7 C 0.002 3.998 8 O -0.373 6.373 9 S 2.781 3.219 10 O -0.963 6.963 11 O -0.963 6.963 12 C -0.721 4.721 13 C -0.165 4.165 14 C -0.140 4.140 15 C -0.138 4.138 16 C 0.089 3.911 17 C -0.491 4.491 18 H 0.101 0.899 19 C -0.142 4.142 20 N -0.420 5.420 21 Si 0.734 3.266 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.184 1.184 25 C -0.149 4.149 26 H 0.067 0.933 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.124 0.876 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.220 0.780 38 H 0.123 0.877 39 H 0.115 0.885 40 H 0.142 0.858 41 H 0.094 0.906 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.261 6.964 3.760 10.091 hybrid contribution 0.289 0.158 -2.023 2.050 sum -5.972 7.122 1.737 9.455 Atomic orbital electron populations 1.21427 0.78258 1.03733 1.01107 1.57331 1.15289 1.20761 1.89938 1.21415 0.98076 0.85492 0.95282 1.23191 0.85658 0.99875 0.95820 1.87860 1.28241 1.85548 1.27628 1.22517 0.95701 0.98474 0.84915 1.22206 0.94356 0.89700 0.93536 1.86559 1.33556 1.54160 1.63014 1.01878 0.72639 0.72131 0.75272 1.93503 1.66371 1.58388 1.78049 1.93502 1.40205 1.84515 1.78068 1.29842 1.04928 1.14323 1.23021 1.20074 0.98206 1.02929 0.95267 1.20805 0.98082 1.00835 0.94307 1.21634 0.94515 0.97288 1.00326 1.17666 0.92890 0.89768 0.90767 1.19613 0.98384 1.39765 0.91294 0.89948 1.25914 0.97933 0.92086 0.98234 1.69783 1.27241 1.34901 1.10109 0.86271 0.82042 0.79382 0.78891 1.19136 1.20244 1.18426 1.20731 0.95580 1.02280 0.96329 0.93277 0.89876 0.91480 0.89520 0.87614 0.92585 0.91502 0.93090 0.91075 0.92395 0.92671 0.77959 0.87729 0.88454 0.85786 0.90639 0.87215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.41 10.11 59.84 0.60 2.01 16 2 N -1.00 -15.98 3.17 -121.76 -0.39 -16.37 16 3 C 0.12 1.75 6.11 -4.04 -0.02 1.72 16 4 C 0.03 0.50 6.28 37.16 0.23 0.73 16 5 O -0.37 -5.84 8.68 -40.08 -0.35 -6.19 16 6 C 0.06 0.87 6.32 37.16 0.23 1.11 16 7 C 0.08 0.95 7.43 37.16 0.28 1.23 16 8 O -0.57 -6.75 13.63 -40.08 -0.55 -7.30 16 9 S 2.68 52.25 5.64 -107.50 -0.61 51.64 16 10 O -0.97 -20.43 16.35 -57.17 -0.93 -21.36 16 11 O -0.97 -20.42 15.82 -57.17 -0.90 -21.33 16 12 C -0.63 -13.74 5.96 -39.66 -0.24 -13.97 16 13 C -0.14 -3.12 9.53 -39.29 -0.37 -3.50 16 14 C -0.12 -2.68 10.02 -39.66 -0.40 -3.08 16 15 C -0.12 -2.87 8.70 -38.87 -0.34 -3.21 16 16 C 0.09 2.32 5.58 -106.82 -0.60 1.73 16 17 C -0.46 -11.47 9.05 -37.74 -0.34 -11.81 16 18 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 19 C 0.08 1.78 5.14 -17.34 -0.09 1.69 16 20 N -0.80 -18.93 10.95 55.55 0.61 -18.32 16 21 Si 0.91 17.63 29.60 -169.99 -5.03 12.60 16 22 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 23 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 24 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 25 C -0.13 -2.99 8.10 -38.87 -0.32 -3.30 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 1.12 6.67 -51.93 -0.35 0.77 16 28 H 0.07 0.96 7.79 -51.93 -0.40 0.55 16 29 H 0.09 1.04 8.11 -51.93 -0.42 0.62 16 30 H 0.11 1.45 6.91 -51.93 -0.36 1.09 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.17 6.94 -51.93 -0.36 0.81 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.37 2.56 9.12 45.56 0.42 2.97 16 38 H 0.10 2.07 7.61 -52.49 -0.40 1.68 16 39 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 40 H 0.12 3.08 6.15 -52.49 -0.32 2.75 16 41 H 0.28 6.13 8.30 -40.82 -0.34 5.79 16 42 H 0.11 2.45 7.60 -52.48 -0.40 2.05 16 LS Contribution 363.52 15.07 5.48 5.48 Total: -1.00 -30.92 363.52 -9.14 -40.06 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -5.11 Total: 9.74 kcal Atomic # 6 Polarization: -27.29 SS G_CDS: -1.36 Total: -28.65 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.22 Total: -34.69 kcal Atomic # 8 Polarization: -53.45 SS G_CDS: -2.73 Total: -56.18 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Atomic # 16 Polarization: 52.25 SS G_CDS: -0.61 Total: 51.64 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.92 -9.14 -40.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619715151.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.627 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds