Wall clock time and date at job start Tue Mar 31 2020 06:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86805 * 120.00091 * 2 1 4 4 H 1.48496 * 109.46983 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47254 * 300.00315 * 3 2 1 6 6 H 1.48500 * 109.46762 * 60.00181 * 3 2 1 7 7 C 1.38657 * 120.00093 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99795 * 179.97438 * 7 2 1 9 9 O 1.34825 * 119.99682 * 0.02562 * 7 2 1 10 10 C 1.35757 * 116.99688 * 185.05328 * 9 7 2 11 11 C 1.38877 * 120.07222 * 354.47068 * 10 9 7 12 12 C 1.38098 * 119.93528 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.06593 * 0.02562 * 12 11 10 14 14 C 1.50697 * 119.93012 * 179.97438 * 13 12 11 15 15 N 1.46501 * 109.47390 * 90.00103 * 14 13 12 16 16 C 1.34772 * 120.00089 * 180.02562 * 15 14 13 17 17 O 1.21279 * 120.00339 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99883 * 179.97438 * 16 15 14 19 19 N 1.46494 * 109.47126 * 179.97438 * 18 16 15 20 20 C 1.35869 * 119.93763 * 89.99610 * 19 18 16 21 21 C 1.36027 * 119.18934 * 180.25324 * 20 19 18 22 22 C 1.39808 * 119.08490 * 359.46500 * 21 20 19 23 23 N 1.31758 * 119.82486 * 0.54232 * 22 21 20 24 24 C 1.33519 * 120.82259 * 359.72926 * 23 22 21 25 25 O 1.21949 * 119.52830 * 180.02562 * 24 23 22 26 26 C 1.38303 * 120.13828 * 0.25093 * 13 12 11 27 27 C 1.38105 * 120.06927 * 359.45382 * 26 13 12 28 28 H 0.96997 * 119.99565 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.03036 * 359.97438 * 11 10 9 30 30 H 1.07991 * 119.96888 * 179.97438 * 12 11 10 31 31 H 1.08997 * 109.47392 * 329.99847 * 14 13 12 32 32 H 1.09002 * 109.46823 * 210.00124 * 14 13 12 33 33 H 0.97000 * 119.99553 * 359.97438 * 15 14 13 34 34 H 1.09002 * 109.47079 * 59.99797 * 18 16 15 35 35 H 1.08996 * 109.46742 * 299.99858 * 18 16 15 36 36 H 1.08000 * 120.40270 * 359.97438 * 20 19 18 37 37 H 1.08000 * 120.45714 * 179.70009 * 21 20 19 38 38 H 1.07996 * 120.08422 * 180.29352 * 22 21 20 39 39 H 1.07998 * 119.96555 * 179.70114 * 26 13 12 40 40 H 1.07996 * 120.03480 * 180.27063 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 3.7096 1.3464 0.0006 5 1 1.8909 2.3965 -1.2124 6 1 1.8909 2.3964 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0016 10 6 2.0700 -3.5046 0.1045 11 6 3.4572 -3.4396 0.0922 12 6 4.2024 -4.5972 0.1997 13 6 3.5685 -5.8207 0.3191 14 6 4.3847 -7.0821 0.4357 15 7 4.6553 -7.3600 1.8484 16 6 5.3744 -8.4455 2.1960 17 8 5.7973 -9.1926 1.3393 18 6 5.6532 -8.7309 3.6493 19 7 6.4465 -9.9573 3.7626 20 6 7.8035 -9.8906 3.7497 21 6 8.5251 -11.0393 3.8507 22 6 7.8501 -12.2571 3.9764 23 7 6.5327 -12.2783 3.9847 24 6 5.8296 -11.1481 3.8797 25 8 4.6111 -11.1951 3.8905 26 6 2.1872 -5.8894 0.3259 27 6 1.4364 -4.7347 0.2249 28 1 -0.4849 0.8401 -0.0004 29 1 3.9526 -2.4846 -0.0023 30 1 5.2811 -4.5473 0.1898 31 1 5.3273 -6.9555 -0.0967 32 1 3.8310 -7.9145 0.0012 33 1 4.3174 -6.7622 2.5336 34 1 4.7107 -8.8578 4.1819 35 1 6.2067 -7.8983 4.0833 36 1 8.3031 -8.9377 3.6558 37 1 9.6047 -11.0105 3.8377 38 1 8.4070 -13.1784 4.0625 39 1 1.6952 -6.8467 0.4144 40 1 0.3579 -4.7886 0.2347 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727677592.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:39 Heat of formation + Delta-G solvation = -13.576418 kcal Electronic energy + Delta-G solvation = -25953.335896 eV Core-core repulsion = 21928.227880 eV Total energy + Delta-G solvation = -4025.108016 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -42.12032 -39.82331 -39.09369 -37.36295 -36.99940 -35.82511 -34.61311 -32.45239 -31.59183 -30.52956 -30.31471 -28.73265 -26.01488 -25.30884 -24.63808 -23.65295 -22.13208 -20.93486 -20.75456 -18.72241 -18.25800 -18.11821 -17.85175 -17.23502 -17.02475 -15.98448 -15.75048 -15.64955 -15.05000 -14.77741 -14.67590 -14.38597 -14.29543 -13.87414 -13.79213 -13.55170 -13.36166 -13.06588 -12.86193 -12.59048 -12.43886 -12.14269 -11.74946 -11.70646 -11.48382 -11.18123 -11.06508 -10.87667 -10.76183 -10.53097 -10.19688 -9.94503 -9.49769 -9.19696 -8.98356 -8.85844 -8.36445 -7.40657 -6.58924 -4.17952 0.22506 1.33168 1.82613 2.04778 2.05604 2.29778 3.00677 3.04686 3.10108 3.10797 3.55255 3.84798 3.88818 3.94170 4.20892 4.34599 4.39470 4.52085 4.69176 4.79191 4.95539 5.03620 5.08557 5.15524 5.31141 5.35976 5.56945 5.70491 5.77880 5.81118 6.01029 6.05069 6.26282 6.27291 6.52377 6.72604 6.88087 7.06289 7.18444 7.28027 7.30937 7.45294 7.63900 7.83655 7.85519 7.93560 8.86218 9.53913 10.58474 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.029004 B = 0.001916 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.149293 B =14607.251587 C =15008.458713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.040 3.960 3 Si 0.943 3.057 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.394 4.394 8 H 0.094 0.906 9 O -0.172 6.172 10 C 0.161 3.839 11 C -0.238 4.238 12 C -0.050 4.050 13 C -0.218 4.218 14 C 0.180 3.820 15 N -0.713 5.713 16 C 0.498 3.502 17 O -0.535 6.535 18 C 0.070 3.930 19 N -0.498 5.498 20 C 0.195 3.805 21 C -0.297 4.297 22 C 0.248 3.752 23 N -0.546 5.546 24 C 0.632 3.368 25 O -0.528 6.528 26 C -0.053 4.053 27 C -0.195 4.195 28 H 0.272 0.728 29 H 0.129 0.871 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.405 0.595 34 H 0.134 0.866 35 H 0.126 0.874 36 H 0.173 0.827 37 H 0.159 0.841 38 H 0.174 0.826 39 H 0.113 0.887 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.835 -14.397 9.047 25.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.470 4.470 8 H 0.112 0.888 9 O -0.074 6.074 10 C 0.106 3.894 11 C -0.257 4.257 12 C -0.069 4.069 13 C -0.220 4.220 14 C 0.059 3.941 15 N -0.365 5.365 16 C 0.282 3.718 17 O -0.412 6.412 18 C -0.057 4.057 19 N -0.212 5.212 20 C 0.057 3.943 21 C -0.323 4.323 22 C 0.066 3.934 23 N -0.278 5.278 24 C 0.334 3.666 25 O -0.402 6.402 26 C -0.072 4.072 27 C -0.214 4.214 28 H 0.081 0.919 29 H 0.146 0.854 30 H 0.126 0.874 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.240 0.760 34 H 0.152 0.848 35 H 0.144 0.856 36 H 0.190 0.810 37 H 0.177 0.823 38 H 0.192 0.808 39 H 0.131 0.869 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 17.049 -15.341 8.451 24.443 hybrid contribution 0.881 1.999 0.135 2.189 sum 17.931 -13.342 8.586 23.942 Atomic orbital electron populations 1.70044 1.06024 1.27853 1.45211 1.25342 0.95879 0.98991 0.96302 0.85617 0.79106 0.80150 0.78385 1.19044 1.20026 1.20034 1.21408 0.91896 0.80680 1.53012 0.88830 1.83984 1.34557 1.11590 1.77294 1.19449 0.90328 0.88052 0.91538 1.21153 0.93772 0.98955 1.11806 1.20617 0.98294 0.91587 0.96371 1.19159 0.93560 0.93421 1.15849 1.20023 0.98648 0.95179 0.80289 1.46277 1.53951 1.26134 1.10129 1.20565 0.79219 0.81581 0.90469 1.90754 1.51733 1.47359 1.51370 1.21918 1.00477 0.86576 0.96757 1.46100 1.06800 1.10333 1.57929 1.22610 0.82589 1.01589 0.87530 1.21608 1.02535 0.92003 1.16108 1.23711 0.90294 0.98494 0.80944 1.69952 1.08830 1.25468 1.23506 1.18219 0.89048 0.79836 0.79475 1.91010 1.11154 1.84806 1.53199 1.20557 0.92764 0.96920 0.96929 1.20234 0.99764 0.90211 1.11183 0.91851 0.85371 0.87426 0.91392 0.91351 0.76049 0.84794 0.85627 0.80982 0.82311 0.80848 0.86889 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.25 13.67 55.48 0.76 -23.49 16 2 C 0.04 1.05 5.49 -17.51 -0.10 0.96 16 3 Si 0.94 19.57 29.55 -169.99 -5.02 14.55 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 7 C -0.39 -10.47 9.49 30.89 0.29 -10.18 16 8 H 0.09 2.28 5.20 -52.49 -0.27 2.01 16 9 O -0.17 -4.67 9.76 0.04 0.00 -4.67 16 10 C 0.16 3.64 6.65 -39.11 -0.26 3.38 16 11 C -0.24 -4.71 9.17 -39.40 -0.36 -5.07 16 12 C -0.05 -0.81 9.69 -39.61 -0.38 -1.19 16 13 C -0.22 -3.31 5.25 -104.57 -0.55 -3.86 16 14 C 0.18 2.37 5.80 -5.19 -0.03 2.34 16 15 N -0.71 -7.81 5.55 -61.47 -0.34 -8.16 16 16 C 0.50 5.82 7.90 -10.99 -0.09 5.73 16 17 O -0.54 -8.53 16.43 5.56 0.09 -8.44 16 18 C 0.07 0.56 5.83 -5.19 -0.03 0.53 16 19 N -0.50 -4.83 2.08 -123.03 -0.26 -5.09 16 20 C 0.19 1.10 10.41 -16.56 -0.17 0.93 16 21 C -0.30 -1.36 10.07 -39.79 -0.40 -1.76 16 22 C 0.25 1.70 11.30 -17.00 -0.19 1.50 16 23 N -0.55 -6.84 10.48 -16.60 -0.17 -7.01 16 24 C 0.63 8.95 8.34 -88.17 -0.74 8.21 16 25 O -0.53 -9.62 16.73 4.97 0.08 -9.54 16 26 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 27 C -0.19 -3.83 9.99 -39.39 -0.39 -4.23 16 28 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.13 2.56 5.64 -52.49 -0.30 2.27 16 30 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 32 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 33 H 0.40 3.64 8.46 -40.82 -0.35 3.30 16 34 H 0.13 1.12 7.39 -51.93 -0.38 0.74 16 35 H 0.13 0.40 8.03 -51.93 -0.42 -0.02 16 36 H 0.17 0.28 8.06 -52.49 -0.42 -0.15 16 37 H 0.16 0.15 8.06 -52.49 -0.42 -0.27 16 38 H 0.17 0.47 8.06 -52.49 -0.42 0.04 16 39 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.12 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 358.21 15.07 5.40 5.40 Total: -1.00 -38.50 358.21 -7.47 -45.97 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -4.23 Total: 4.43 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -3.78 Total: -3.96 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: -0.01 Total: -43.74 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: 0.17 Total: -22.65 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -38.50 -7.47 -45.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727677592.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.397 kcal (2) G-P(sol) polarization free energy of solvation -38.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds