Wall clock time and date at job start Tue Mar 31 2020 06:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47544 * 2 1 4 4 C 1.52995 * 109.47544 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47544 * 179.97438 * 4 3 2 6 6 S 1.81400 * 109.47374 * 180.02562 * 5 4 3 7 7 O 1.42104 * 108.57512 * 65.51631 * 6 5 4 8 8 O 1.42098 * 108.57739 * 294.48995 * 6 5 4 9 9 C 1.81402 * 101.92193 * 180.02562 * 6 5 4 10 10 C 1.50700 * 109.47099 * 180.02562 * 9 6 5 11 11 O 1.21303 * 119.99816 * 0.02562 * 10 9 6 12 12 N 1.34777 * 119.99675 * 180.27969 * 10 9 6 13 13 C 1.40595 * 119.99527 * 179.72943 * 12 10 9 14 14 C 1.40649 * 126.08553 * 359.68015 * 13 12 10 15 15 N 1.30903 * 108.38945 * 179.87998 * 14 13 12 16 16 N 1.40074 * 108.40705 * 0.38914 * 15 14 13 17 17 C 1.37320 * 126.07077 * 179.73305 * 16 15 14 18 18 H 1.07999 * 120.00028 * 180.02562 * 17 16 15 19 19 C 1.38983 * 120.00055 * 0.02562 * 17 16 15 20 20 N 1.31296 * 119.99923 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00025 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46692 * 90.00217 * 21 19 17 23 23 H 1.48503 * 109.47299 * 209.99837 * 21 19 17 24 24 H 1.48503 * 109.47411 * 330.00357 * 21 19 17 25 25 C 1.35679 * 126.07814 * 179.97438 * 13 12 10 26 26 H 1.09000 * 109.47390 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46834 * 299.99517 * 1 2 3 28 28 H 1.09002 * 109.47553 * 59.99281 * 1 2 3 29 29 H 1.09007 * 109.46834 * 240.00483 * 2 1 3 30 30 H 1.09002 * 109.47553 * 120.00719 * 2 1 3 31 31 H 1.09007 * 109.46661 * 60.00377 * 3 2 1 32 32 H 1.08997 * 109.47092 * 300.00475 * 3 2 1 33 33 H 1.09007 * 109.46834 * 60.00483 * 4 3 2 34 34 H 1.09002 * 109.47553 * 300.00719 * 4 3 2 35 35 H 1.09007 * 109.46661 * 60.00377 * 5 4 3 36 36 H 1.08997 * 109.47092 * 300.00475 * 5 4 3 37 37 H 1.09009 * 109.46681 * 60.00042 * 9 6 5 38 38 H 1.08998 * 109.47004 * 300.00520 * 9 6 5 39 39 H 0.97001 * 120.00485 * 359.71840 * 12 10 9 40 40 H 1.07999 * 125.80209 * 0.02562 * 14 13 12 41 41 H 0.97004 * 120.00252 * 179.97438 * 20 19 17 42 42 H 1.07996 * 126.24944 * 359.92772 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8849 -0.0013 6 16 5.8941 2.8848 -0.0028 7 8 6.3457 2.3264 -1.2290 8 8 6.3478 2.3266 1.2226 9 6 6.2689 4.6597 -0.0026 10 6 7.7628 4.8576 -0.0044 11 8 8.5020 3.8959 -0.0062 12 7 8.2775 6.1033 0.0011 13 6 9.6713 6.2879 0.0051 14 6 10.6418 5.2698 0.0103 15 7 11.8258 5.8280 0.0103 16 7 11.6592 7.2188 0.0141 17 6 12.6650 8.1536 0.0205 18 1 12.4238 9.2064 0.0234 19 6 13.9934 7.7451 0.0232 20 7 14.2866 6.4653 0.0191 21 14 15.3617 9.0167 0.0311 22 1 15.7201 9.3494 1.4333 23 1 16.5518 8.4677 -0.6671 24 1 14.9009 10.2441 -0.6665 25 6 10.3194 7.4799 0.0103 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9562 0.8901 32 1 1.6767 1.9563 -0.8899 33 1 3.9329 0.9288 -0.8910 34 1 3.9338 0.9284 0.8890 35 1 3.7172 3.3989 0.8888 36 1 3.7164 3.3985 -0.8912 37 1 5.8419 5.1210 0.8880 38 1 5.8404 5.1216 -0.8920 39 1 7.6864 6.8723 0.0021 40 1 10.4437 4.2082 0.0116 41 1 15.2138 6.1801 0.0206 42 1 9.8593 8.4569 0.0110 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728025538.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:22 Heat of formation + Delta-G solvation = -36.556631 kcal Electronic energy + Delta-G solvation = -24981.642233 eV Core-core repulsion = 21090.981671 eV Total energy + Delta-G solvation = -3890.660562 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -40.02429 -38.71576 -36.95772 -36.73512 -35.93621 -34.38859 -33.25026 -32.73930 -30.86508 -30.09107 -27.66142 -27.33369 -24.83384 -22.89810 -21.56644 -21.30360 -20.57072 -19.51100 -18.81977 -17.75575 -16.95925 -16.70848 -16.66510 -15.97629 -15.73923 -15.46851 -15.06428 -15.02611 -14.35719 -14.17021 -14.04344 -13.85938 -13.46512 -13.41820 -12.92675 -12.72986 -12.62971 -12.43155 -12.00220 -11.94330 -11.89537 -11.71245 -11.49723 -11.49496 -11.41186 -11.27706 -11.10852 -10.99633 -10.96904 -10.54970 -10.47548 -10.29424 -9.57132 -9.21434 -8.84349 -8.09200 -6.78181 -6.57543 -4.25851 -0.22891 2.58768 2.65967 2.98374 3.03339 3.09537 3.18977 3.61167 3.72760 3.86139 3.87175 4.18270 4.28827 4.39909 4.49744 4.54075 4.58961 4.76068 4.81405 4.86601 4.99909 5.00271 5.04988 5.10252 5.28598 5.30924 5.43232 5.45267 5.61095 5.70291 5.83714 5.91576 6.19243 6.38046 6.79905 6.91260 6.99584 7.19158 7.81761 8.00624 8.21822 8.48367 8.71558 9.34295 9.63343 10.38275 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.059435 B = 0.001933 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.986232 B =14485.162496 C =14754.762563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.131 4.131 3 C -0.112 4.112 4 C -0.114 4.114 5 C -0.622 4.622 6 S 2.453 3.547 7 O -0.918 6.918 8 O -0.918 6.918 9 C -0.654 4.654 10 C 0.522 3.478 11 O -0.526 6.526 12 N -0.608 5.608 13 C -0.070 4.070 14 C -0.028 4.028 15 N -0.259 5.259 16 N -0.140 5.140 17 C -0.324 4.324 18 H 0.117 0.883 19 C 0.046 3.954 20 N -0.767 5.767 21 Si 0.936 3.064 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.264 1.264 25 C -0.081 4.081 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.400 0.600 40 H 0.178 0.822 41 H 0.276 0.724 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.180 -3.265 -0.024 25.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C -0.151 4.151 4 C -0.153 4.153 5 C -0.750 4.750 6 S 2.630 3.370 7 O -0.915 6.915 8 O -0.915 6.915 9 C -0.782 4.782 10 C 0.305 3.695 11 O -0.404 6.404 12 N -0.249 5.249 13 C -0.175 4.175 14 C -0.204 4.204 15 N -0.090 5.090 16 N 0.093 4.907 17 C -0.456 4.456 18 H 0.135 0.865 19 C -0.172 4.172 20 N -0.393 5.393 21 Si 0.760 3.240 22 H -0.196 1.196 23 H -0.200 1.200 24 H -0.188 1.188 25 C -0.232 4.232 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.173 0.827 38 H 0.173 0.827 39 H 0.233 0.767 40 H 0.195 0.805 41 H 0.087 0.913 42 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -22.576 -4.980 -0.031 23.118 hybrid contribution -1.384 2.185 0.007 2.586 sum -23.960 -2.796 -0.023 24.123 Atomic orbital electron populations 1.21773 0.95733 1.01728 1.01793 1.21586 0.96008 0.96659 1.02567 1.21586 0.93600 0.97303 1.02574 1.21363 0.97741 0.91884 1.04288 1.30507 1.26623 1.06379 1.11521 1.07418 0.77098 0.76555 0.75917 1.93588 1.78379 1.73741 1.45777 1.93587 1.78315 1.73762 1.45828 1.30809 1.03875 1.30717 1.12825 1.18826 0.86856 0.84235 0.79562 1.90762 1.59735 1.39498 1.50401 1.42273 1.05818 1.06705 1.70154 1.17265 0.81386 0.93965 1.24892 1.24173 0.89125 0.99758 1.07332 1.78289 1.18907 0.86083 1.25733 1.44591 1.02539 1.04893 1.38712 1.19890 0.84363 0.87844 1.53501 0.86541 1.25662 0.98976 0.97080 0.95449 1.70217 1.20059 1.14224 1.34834 0.85810 0.79491 0.79739 0.78986 1.19559 1.20034 1.18810 1.21225 0.85406 0.96690 1.19916 0.92680 0.92745 0.92737 0.91651 0.91649 0.91525 0.91531 0.89964 0.89956 0.84927 0.84935 0.82715 0.82725 0.76651 0.80495 0.91340 0.83591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.15 0.37 -0.40 16 2 C -0.13 -0.75 5.93 -26.73 -0.16 -0.91 16 3 C -0.11 -0.64 5.21 -26.73 -0.14 -0.78 16 4 C -0.11 -0.82 5.22 -26.73 -0.14 -0.96 16 5 C -0.62 -3.75 5.81 37.16 0.22 -3.53 16 6 S 2.45 28.66 3.96 -107.50 -0.43 28.23 16 7 O -0.92 -14.57 17.95 -59.54 -1.07 -15.64 16 8 O -0.92 -14.58 17.95 -59.51 -1.07 -15.65 16 9 C -0.65 -6.42 6.29 36.01 0.23 -6.20 16 10 C 0.52 9.07 7.82 -10.98 -0.09 8.98 16 11 O -0.53 -11.75 12.78 2.54 0.03 -11.72 16 12 N -0.61 -10.59 5.47 -10.00 -0.05 -10.64 16 13 C -0.07 -1.61 6.90 -83.84 -0.58 -2.19 16 14 C -0.03 -0.76 10.85 -17.04 -0.18 -0.95 16 15 N -0.26 -7.66 10.40 30.80 0.32 -7.34 16 16 N -0.14 -3.87 3.74 -11.41 -0.04 -3.91 16 17 C -0.32 -8.55 10.25 -14.82 -0.15 -8.71 16 18 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 19 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 20 N -0.77 -21.57 11.81 55.49 0.66 -20.92 16 21 Si 0.94 18.89 29.55 -169.99 -5.02 13.87 16 22 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 23 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 25 C -0.08 -1.90 11.49 -16.39 -0.19 -2.09 16 26 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 36 H 0.13 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.15 0.88 8.14 -51.92 -0.42 0.45 16 38 H 0.15 0.87 8.14 -51.92 -0.42 0.45 16 39 H 0.40 4.97 8.83 -40.82 -0.36 4.61 16 40 H 0.18 4.78 5.92 -52.49 -0.31 4.47 16 41 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.15 2.79 8.06 -52.49 -0.42 2.37 16 LS Contribution 370.89 15.07 5.59 5.59 Total: -1.00 -40.31 370.89 -8.13 -48.45 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -6.14 Total: 6.32 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -0.91 Total: -16.64 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: 0.88 Total: -42.81 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -2.10 Total: -43.01 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Atomic # 16 Polarization: 28.66 SS G_CDS: -0.43 Total: 28.23 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -40.31 -8.13 -48.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728025538.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.891 kcal (2) G-P(sol) polarization free energy of solvation -40.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds