Wall clock time and date at job start Tue Mar 31 2020 05:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86794 * 119.99855 * 2 1 4 4 H 1.48501 * 109.47204 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47021 * 299.99637 * 3 2 1 6 6 H 1.48494 * 109.47379 * 60.00206 * 3 2 1 7 7 C 1.38953 * 120.00135 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00125 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00028 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00002 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00310 * 359.97438 * 10 9 7 12 12 C 1.50706 * 120.00114 * 179.97438 * 10 9 7 13 13 O 1.45192 * 109.47445 * 179.97438 * 12 10 9 14 14 C 1.34748 * 117.00155 * 179.97438 * 13 12 10 15 15 O 1.21526 * 120.00447 * 0.02562 * 14 13 12 16 16 C 1.47290 * 119.99938 * 179.97438 * 14 13 12 17 17 C 1.41338 * 126.42941 * 359.97261 * 16 14 13 18 18 N 1.30428 * 108.01797 * 179.78080 * 17 16 14 19 19 N 1.39929 * 108.91535 * 0.38110 * 18 17 16 20 20 C 1.46503 * 125.74546 * 179.87450 * 19 18 17 21 21 C 1.50706 * 109.46722 * 304.69309 * 20 19 18 22 22 C 1.38238 * 119.99727 * 90.00230 * 21 20 19 23 23 C 1.38234 * 119.99693 * 180.02562 * 22 21 20 24 24 C 1.38234 * 120.00240 * 359.97438 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.26327 * 24 23 22 26 26 C 1.38234 * 120.00207 * 270.01721 * 21 20 19 27 27 C 1.34227 * 108.51282 * 359.61167 * 19 18 17 28 28 H 0.96993 * 120.00278 * 0.02562 * 1 2 3 29 29 H 0.97004 * 119.99774 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47022 * 59.99416 * 12 10 9 31 31 H 1.09004 * 109.46692 * 300.00148 * 12 10 9 32 32 H 1.08009 * 125.99286 * 359.97438 * 17 16 14 33 33 H 1.09000 * 109.47286 * 184.69788 * 20 19 18 34 34 H 1.08993 * 109.47262 * 64.69126 * 20 19 18 35 35 H 1.07997 * 119.99846 * 359.97438 * 22 21 20 36 36 H 1.07999 * 119.99751 * 179.97438 * 23 22 21 37 37 H 1.08002 * 119.99744 * 179.97438 * 24 23 22 38 38 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 39 39 H 1.07999 * 120.00008 * 0.02562 * 26 21 20 40 40 H 1.08006 * 126.29660 * 180.22102 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2126 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2439 -4.8630 0.0022 13 8 2.1874 -5.9666 0.0027 14 6 1.6724 -7.2118 0.0038 15 8 0.4676 -7.3711 0.0038 16 6 2.5696 -8.3798 0.0037 17 6 3.9827 -8.3527 0.0021 18 7 4.4099 -9.5850 0.0074 19 7 3.3078 -10.4472 0.0038 20 6 3.3664 -11.9110 0.0052 21 6 4.1990 -12.3815 -1.1595 22 6 5.5618 -12.5574 -1.0084 23 6 6.3257 -12.9884 -2.0769 24 6 5.7268 -13.2440 -3.2962 25 6 4.3648 -13.0634 -3.4487 26 6 3.6002 -12.6368 -2.3789 27 6 2.1879 -9.7073 0.0048 28 1 -0.4850 0.8400 -0.0004 29 1 0.3534 -2.3907 0.0005 30 1 0.6175 -4.9213 -0.8880 31 1 0.6169 -4.9201 0.8920 32 1 4.6006 -7.4668 0.0003 33 1 2.3578 -12.3151 -0.0826 34 1 3.8162 -12.2558 0.9362 35 1 6.0298 -12.3573 -0.0559 36 1 7.3904 -13.1255 -1.9590 37 1 6.3237 -13.5804 -4.1311 38 1 3.8975 -13.2588 -4.4025 39 1 2.5356 -12.4987 -2.4971 40 1 1.1746 -10.0812 0.0060 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731236649.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:14 Heat of formation + Delta-G solvation = -14.254919 kcal Electronic energy + Delta-G solvation = -25615.017178 eV Core-core repulsion = 21589.879740 eV Total energy + Delta-G solvation = -4025.137438 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.59347 -39.85446 -39.46599 -38.00494 -35.87520 -34.58333 -33.94512 -31.35649 -31.34103 -31.25767 -30.55587 -28.35347 -26.81589 -24.67456 -23.26718 -22.92629 -22.33828 -20.87269 -20.22202 -19.49579 -18.17927 -18.00556 -17.20104 -16.59668 -16.27979 -16.11501 -15.96308 -15.62922 -15.20911 -14.91122 -14.51806 -14.45329 -13.94188 -13.89995 -13.82606 -13.44637 -13.12712 -13.01010 -12.87263 -12.74930 -12.19125 -11.97909 -11.66905 -11.58517 -11.46097 -11.15638 -11.11844 -10.35632 -10.29317 -10.29095 -10.20756 -9.79197 -9.57124 -9.33923 -9.31159 -8.91057 -8.45993 -8.03532 -6.45826 -3.87501 0.73428 0.99922 1.27108 2.04735 2.12593 2.93163 3.14944 3.26760 3.29656 3.34717 3.40121 3.79971 3.96285 4.16618 4.20073 4.49433 4.54154 4.56959 4.69329 4.78359 4.81894 4.89883 5.07176 5.13013 5.17397 5.19845 5.29202 5.49894 5.51871 5.60854 5.75335 5.78492 6.00881 6.07914 6.10340 6.12704 6.32224 6.50713 6.55636 6.74981 7.36962 7.52168 7.95888 8.09253 8.53829 9.11843 9.44673 9.94830 10.71616 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.025560 B = 0.001877 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.180077 B =14916.080105 C =15380.469616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.023 3.977 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.300 4.300 8 H 0.107 0.893 9 N -0.555 5.555 10 C 0.440 3.560 11 O -0.575 6.575 12 C 0.063 3.937 13 O -0.321 6.321 14 C 0.541 3.459 15 O -0.528 6.528 16 C -0.273 4.273 17 C 0.107 3.893 18 N -0.293 5.293 19 N -0.358 5.358 20 C 0.173 3.827 21 C -0.114 4.114 22 C -0.081 4.081 23 C -0.124 4.124 24 C -0.108 4.108 25 C -0.124 4.124 26 C -0.099 4.099 27 C 0.132 3.868 28 H 0.273 0.727 29 H 0.395 0.605 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.202 0.798 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.899 -28.805 -2.689 29.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.179 4.179 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.124 0.876 9 N -0.192 5.192 10 C 0.225 3.775 11 O -0.459 6.459 12 C -0.015 4.015 13 O -0.235 6.235 14 C 0.386 3.614 15 O -0.419 6.419 16 C -0.286 4.286 17 C -0.081 4.081 18 N -0.112 5.112 19 N -0.136 5.136 20 C 0.053 3.947 21 C -0.115 4.115 22 C -0.099 4.099 23 C -0.142 4.142 24 C -0.127 4.127 25 C -0.142 4.142 26 C -0.117 4.117 27 C -0.019 4.019 28 H 0.083 0.917 29 H 0.228 0.772 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.218 0.782 33 H 0.127 0.873 34 H 0.117 0.883 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 6.280 -29.570 -2.667 30.347 hybrid contribution -1.223 1.464 -0.074 1.910 sum 5.057 -28.106 -2.741 28.688 Atomic orbital electron populations 1.69621 1.05979 1.28297 1.49975 1.25308 0.95689 0.99842 0.97040 0.85746 0.79721 0.80816 0.77745 1.19099 1.20681 1.20673 1.19776 0.93500 0.81769 1.47895 0.87569 1.41709 1.09369 1.04091 1.64047 1.19346 0.88340 0.84100 0.85709 1.90557 1.13432 1.86823 1.55073 1.22718 0.90831 0.84429 1.03484 1.86581 1.39801 1.13778 1.83366 1.20015 0.86187 0.82902 0.72298 1.90811 1.15958 1.87047 1.48090 1.19322 0.93539 0.90909 1.24796 1.24396 0.93431 0.95769 0.94483 1.77265 1.08752 1.00215 1.24973 1.48613 1.03938 1.06525 1.54545 1.20697 1.01836 0.73959 0.98228 1.19730 0.94640 1.02207 0.94893 1.21065 0.92836 0.96639 0.99380 1.21190 1.00084 0.99759 0.93122 1.21259 0.95007 0.98875 0.97533 1.21147 0.94217 1.00110 0.98765 1.21066 1.00023 0.98297 0.92359 1.22919 0.93184 0.90403 0.95388 0.91743 0.77165 0.89571 0.89550 0.78164 0.87294 0.88259 0.85633 0.85739 0.85897 0.85804 0.85983 0.79283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.30 13.05 55.50 0.72 -23.57 16 2 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 8 H 0.11 3.09 7.16 -52.49 -0.38 2.71 16 9 N -0.55 -14.18 5.29 -10.96 -0.06 -14.24 16 10 C 0.44 10.76 7.86 -10.98 -0.09 10.67 16 11 O -0.57 -16.11 16.08 -14.11 -0.23 -16.34 16 12 C 0.06 1.23 5.95 36.01 0.21 1.45 16 13 O -0.32 -6.22 9.60 -47.30 -0.45 -6.67 16 14 C 0.54 9.16 7.95 34.41 0.27 9.44 16 15 O -0.53 -9.56 16.69 -19.29 -0.32 -9.88 16 16 C -0.27 -3.79 6.13 -105.08 -0.64 -4.43 16 17 C 0.11 1.45 11.87 -16.97 -0.20 1.24 16 18 N -0.29 -3.69 12.32 30.87 0.38 -3.31 16 19 N -0.36 -3.54 3.64 -61.97 -0.23 -3.77 16 20 C 0.17 1.07 6.61 -5.19 -0.03 1.04 16 21 C -0.11 -0.85 5.31 -104.62 -0.56 -1.41 16 22 C -0.08 -0.62 9.70 -39.58 -0.38 -1.01 16 23 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 24 C -0.11 -0.75 10.05 -39.58 -0.40 -1.15 16 25 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 26 C -0.10 -0.72 9.70 -39.58 -0.38 -1.10 16 27 C 0.13 1.39 11.25 -16.55 -0.19 1.20 16 28 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 30 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 31 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 32 H 0.20 2.57 8.06 -52.48 -0.42 2.15 16 33 H 0.11 0.35 8.00 -51.93 -0.42 -0.07 16 34 H 0.10 0.49 8.08 -51.93 -0.42 0.07 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 36 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 38 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.19 1.40 8.06 -52.48 -0.42 0.97 16 LS Contribution 367.33 15.07 5.54 5.54 Total: -1.00 -35.24 367.33 -7.56 -42.80 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -4.47 Total: 8.17 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -3.42 Total: 5.40 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 0.82 Total: -44.90 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -1.00 Total: -32.89 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.24 -7.56 -42.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731236649.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.547 kcal (2) G-P(sol) polarization free energy of solvation -35.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds