Wall clock time and date at job start Tue Mar 31 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 119.99793 * 2 1 4 4 H 1.48502 * 109.47132 * 239.99316 * 3 2 1 5 5 H 1.48498 * 109.47382 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47439 * 119.99869 * 3 2 1 7 7 C 1.38943 * 120.00146 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00216 * 180.02562 * 7 2 1 9 9 N 1.37098 * 119.99858 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99936 * 179.97438 * 9 7 2 11 11 O 1.21294 * 120.00143 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99694 * 180.02562 * 10 9 7 13 13 O 1.45203 * 109.46818 * 179.97438 * 12 10 9 14 14 C 1.34231 * 117.00091 * 180.02562 * 13 12 10 15 15 O 1.20828 * 119.99862 * 359.97438 * 14 13 12 16 16 C 1.50691 * 119.99905 * 180.02562 * 14 13 12 17 17 C 1.50703 * 109.47259 * 179.97438 * 16 14 13 18 18 C 1.39933 * 126.03248 * 270.00443 * 17 16 14 19 19 N 1.30878 * 108.24000 * 179.71563 * 18 17 16 20 20 N 1.40087 * 108.21731 * 0.43537 * 19 18 17 21 21 C 1.40186 * 126.04903 * 179.82485 * 20 19 18 22 22 C 1.38838 * 120.06354 * 179.71217 * 21 20 19 23 23 C 1.38120 * 119.93062 * 179.97438 * 22 21 20 24 24 C 1.38285 * 120.06514 * 359.97438 * 23 22 21 25 25 C 1.38272 * 120.13574 * 359.97438 * 24 23 22 26 26 C 1.38118 * 120.06859 * 0.02584 * 25 24 23 27 27 C 1.35219 * 107.89648 * 359.55432 * 20 19 18 28 28 H 0.97000 * 120.00155 * 0.02562 * 1 2 3 29 29 H 0.97004 * 120.00395 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47110 * 60.00100 * 12 10 9 31 31 H 1.08998 * 109.47404 * 299.99750 * 12 10 9 32 32 H 1.09002 * 109.47624 * 59.99946 * 16 14 13 33 33 H 1.09000 * 109.47340 * 299.99560 * 16 14 13 34 34 H 1.07996 * 125.87870 * 359.97438 * 18 17 16 35 35 H 1.07992 * 120.03688 * 359.97438 * 22 21 20 36 36 H 1.07997 * 119.96399 * 180.25185 * 23 22 21 37 37 H 1.08001 * 119.93139 * 179.97438 * 24 23 22 38 38 H 1.07998 * 119.96688 * 179.97438 * 25 24 23 39 39 H 1.08000 * 120.03895 * 179.97438 * 26 25 24 40 40 H 1.08001 * 126.14447 * 180.26134 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2831 2.7464 -0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2437 -4.8629 0.0000 13 8 2.1873 -5.9665 -0.0005 14 6 1.6743 -7.2070 -0.0016 15 8 0.4764 -7.3653 -0.0017 16 6 2.5923 -8.4020 -0.0016 17 6 1.7716 -9.6659 -0.0023 18 6 1.3228 -10.3566 1.1289 19 7 0.6392 -11.3983 0.7284 20 7 0.6392 -11.4099 -0.6724 21 6 0.0188 -12.3653 -1.4894 22 6 0.0930 -12.2524 -2.8712 23 6 -0.5189 -13.1956 -3.6736 24 6 -1.2043 -14.2518 -3.1020 25 6 -1.2789 -14.3676 -1.7261 26 6 -0.6692 -13.4276 -0.9185 27 6 1.3384 -10.3332 -1.0969 28 1 -0.4850 0.8400 -0.0004 29 1 0.3533 -2.3906 -0.0002 30 1 0.6174 -4.9204 -0.8903 31 1 0.6168 -4.9209 0.8897 32 1 3.2205 -8.3777 0.8888 33 1 3.2218 -8.3766 -0.8911 34 1 1.5053 -10.0758 2.1557 35 1 0.6284 -11.4279 -3.3182 36 1 -0.4581 -13.1104 -4.7485 37 1 -1.6822 -14.9879 -3.7314 38 1 -1.8153 -15.1933 -1.2826 39 1 -0.7282 -13.5182 0.1561 40 1 1.5188 -10.0557 -2.1249 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731237890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:41 Heat of formation + Delta-G solvation = -9.847580 kcal Electronic energy + Delta-G solvation = -25547.807385 eV Core-core repulsion = 21522.861064 eV Total energy + Delta-G solvation = -4024.946322 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.92533 -40.18236 -39.32470 -38.10541 -36.07536 -34.16673 -33.98766 -32.41702 -31.47309 -31.35788 -29.86640 -28.68114 -27.21047 -24.60336 -23.72926 -23.30568 -21.35467 -21.11343 -19.99567 -19.55136 -18.42248 -18.04977 -17.52082 -16.62559 -16.37705 -16.17135 -15.66029 -15.63898 -15.23368 -15.06267 -14.46733 -14.38489 -14.19689 -13.97578 -13.93960 -13.42573 -13.31317 -13.14922 -12.81033 -12.47236 -12.10354 -11.95477 -11.89521 -11.62176 -11.60900 -11.10559 -10.90690 -10.64680 -10.48573 -10.36420 -10.35974 -10.26581 -9.58693 -9.48592 -9.32458 -8.51086 -8.32784 -8.07388 -6.49044 -3.91205 0.45249 0.86825 1.83113 2.05081 2.29642 2.39428 3.01966 3.16026 3.23305 3.28644 3.35981 3.75271 4.04898 4.13382 4.34601 4.48204 4.51309 4.67142 4.69477 4.82414 4.89477 4.96785 4.99668 5.16083 5.17870 5.27330 5.31598 5.43877 5.53098 5.60277 5.70511 5.74319 5.86343 5.88926 6.02498 6.07515 6.26550 6.32848 6.70798 6.83750 7.31921 7.48286 7.89903 8.00814 8.49741 9.07868 9.40473 9.90544 10.68109 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.028227 B = 0.001784 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.732421 B =15694.889671 C =16104.829232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.553 5.553 10 C 0.438 3.562 11 O -0.576 6.576 12 C 0.061 3.939 13 O -0.327 6.327 14 C 0.454 3.546 15 O -0.509 6.509 16 C -0.032 4.032 17 C -0.214 4.214 18 C 0.079 3.921 19 N -0.290 5.290 20 N -0.324 5.324 21 C 0.165 3.835 22 C -0.143 4.143 23 C -0.092 4.092 24 C -0.133 4.133 25 C -0.096 4.096 26 C -0.122 4.122 27 C 0.074 3.926 28 H 0.274 0.726 29 H 0.395 0.605 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.191 0.809 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.138 0.862 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.571 -27.368 -4.726 27.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.762 3.238 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.432 4.432 8 H 0.123 0.877 9 N -0.190 5.190 10 C 0.223 3.777 11 O -0.460 6.460 12 C -0.016 4.016 13 O -0.242 6.242 14 C 0.297 3.703 15 O -0.397 6.397 16 C -0.071 4.071 17 C -0.224 4.224 18 C -0.109 4.109 19 N -0.108 5.108 20 N -0.098 5.098 21 C 0.073 3.927 22 C -0.164 4.164 23 C -0.110 4.110 24 C -0.152 4.152 25 C -0.114 4.114 26 C -0.141 4.141 27 C -0.069 4.069 28 H 0.084 0.916 29 H 0.228 0.772 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.208 0.792 35 H 0.149 0.851 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.149 0.851 39 H 0.156 0.844 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -1.959 -28.273 -4.397 28.679 hybrid contribution -0.044 1.737 -0.239 1.754 sum -2.003 -26.536 -4.636 27.012 Atomic orbital electron populations 1.69608 1.05997 1.28572 1.49636 1.25311 0.95687 0.99868 0.96905 0.85852 0.78735 0.80076 0.79180 1.19775 1.20895 1.19752 1.19679 0.93459 0.81795 1.48285 0.87655 1.41709 1.09362 1.04108 1.63869 1.19350 0.88341 0.84108 0.85890 1.90558 1.13418 1.86819 1.55248 1.22713 0.90868 0.84651 1.03380 1.86549 1.40329 1.14232 1.83072 1.23783 0.88869 0.84810 0.72874 1.90668 1.16956 1.86778 1.45273 1.19506 0.95535 0.85166 1.06890 1.19520 1.10212 1.00435 0.92272 1.23980 0.94754 0.91986 1.00141 1.77429 1.23131 1.22803 0.87403 1.45705 1.40065 1.19259 1.04804 1.17588 0.96603 0.89669 0.88843 1.20868 1.03270 1.01502 0.90719 1.20994 0.96419 0.93661 0.99969 1.21244 1.00120 0.98711 0.95097 1.21086 0.98379 0.98407 0.93554 1.20929 0.98325 0.93566 1.01323 1.22336 0.95523 0.88593 1.00442 0.91590 0.77171 0.89713 0.89641 0.86391 0.86788 0.79191 0.85132 0.84933 0.85418 0.85082 0.84448 0.80461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.11 13.05 55.50 0.72 -23.39 16 2 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 3 Si 0.94 20.69 29.55 -169.99 -5.02 15.66 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 6 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.30 -8.36 9.68 -14.94 -0.14 -8.50 16 8 H 0.11 3.02 7.16 -52.49 -0.38 2.64 16 9 N -0.55 -14.01 5.29 -10.96 -0.06 -14.06 16 10 C 0.44 10.55 7.86 -10.98 -0.09 10.46 16 11 O -0.58 -15.93 16.08 -14.11 -0.23 -16.16 16 12 C 0.06 1.17 5.94 36.01 0.21 1.38 16 13 O -0.33 -5.90 9.75 -45.91 -0.45 -6.35 16 14 C 0.45 6.80 7.95 36.00 0.29 7.09 16 15 O -0.51 -8.89 15.78 -18.75 -0.30 -9.19 16 16 C -0.03 -0.33 6.30 -29.04 -0.18 -0.51 16 17 C -0.21 -2.34 4.60 -105.03 -0.48 -2.82 16 18 C 0.08 0.88 11.96 -17.32 -0.21 0.68 16 19 N -0.29 -3.67 11.87 30.64 0.36 -3.30 16 20 N -0.32 -3.79 3.80 -10.70 -0.04 -3.83 16 21 C 0.17 1.70 6.69 -83.59 -0.56 1.14 16 22 C -0.14 -1.15 9.46 -39.40 -0.37 -1.53 16 23 C -0.09 -0.59 10.04 -39.61 -0.40 -0.99 16 24 C -0.13 -0.82 10.04 -39.55 -0.40 -1.22 16 25 C -0.10 -0.67 10.04 -39.61 -0.40 -1.07 16 26 C -0.12 -1.13 9.66 -39.40 -0.38 -1.51 16 27 C 0.07 0.77 10.71 -17.10 -0.18 0.59 16 28 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 30 H 0.08 1.48 8.13 -51.93 -0.42 1.06 16 31 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 32 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.19 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.13 0.83 6.74 -52.49 -0.35 0.48 16 36 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 37 H 0.13 0.49 8.06 -52.49 -0.42 0.06 16 38 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 39 H 0.14 1.31 7.70 -52.49 -0.40 0.91 16 40 H 0.18 1.32 7.04 -52.49 -0.37 0.95 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -35.55 362.55 -7.27 -42.82 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -4.34 Total: 8.58 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -3.39 Total: 3.75 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.99 Total: -44.59 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.97 Total: -31.69 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.55 -7.27 -42.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731237890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.974 kcal (2) G-P(sol) polarization free energy of solvation -35.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds