Wall clock time and date at job start Tue Mar 31 2020 06:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86807 * 119.99775 * 2 1 4 4 H 1.48502 * 109.46933 * 269.99429 * 3 2 1 5 5 H 1.48500 * 109.47239 * 29.99965 * 3 2 1 6 6 H 1.48499 * 109.46805 * 149.99847 * 3 2 1 7 7 C 1.38947 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99852 * 0.02562 * 7 2 1 9 9 N 1.37096 * 120.00105 * 179.97438 * 7 2 1 10 10 C 1.34779 * 119.99646 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00110 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99775 * 180.02562 * 10 9 7 13 13 O 1.45202 * 109.47308 * 179.97438 * 12 10 9 14 14 C 1.34709 * 116.99855 * 179.97438 * 13 12 10 15 15 O 1.21468 * 120.00316 * 0.02562 * 14 13 12 16 16 C 1.47733 * 119.99568 * 179.97438 * 14 13 12 17 17 C 1.39626 * 120.14512 * 179.97438 * 16 14 13 18 18 C 1.37947 * 119.84448 * 179.70064 * 17 16 14 19 19 C 1.38372 * 120.14939 * 0.26453 * 18 17 16 20 20 C 1.50693 * 119.84555 * 179.97438 * 19 18 17 21 21 N 1.46509 * 109.46897 * 90.00262 * 20 19 18 22 22 C 1.34944 * 126.03990 * 124.71633 * 21 20 19 23 23 C 1.35316 * 107.74808 * 179.83947 * 22 21 20 24 24 C 1.39872 * 107.91726 * 0.42060 * 23 22 21 25 25 N 1.30837 * 108.20023 * 359.73535 * 24 23 22 26 26 C 1.38360 * 120.30170 * 0.02562 * 19 18 17 27 27 C 1.37944 * 120.15600 * 0.02562 * 26 19 18 28 28 H 0.97007 * 120.00042 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00251 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46924 * 59.99821 * 12 10 9 31 31 H 1.09001 * 109.47068 * 300.00350 * 12 10 9 32 32 H 1.08002 * 120.08162 * 359.97438 * 17 16 14 33 33 H 1.07999 * 119.92426 * 180.27702 * 18 17 16 34 34 H 1.08998 * 109.47515 * 209.99858 * 20 19 18 35 35 H 1.08999 * 109.47649 * 330.00542 * 20 19 18 36 36 H 1.08007 * 126.12761 * 359.97438 * 22 21 20 37 37 H 1.07997 * 126.03773 * 180.15676 * 23 22 21 38 38 H 1.08002 * 125.89470 * 179.72193 * 24 23 22 39 39 H 1.08003 * 119.92647 * 180.02562 * 26 19 18 40 40 H 1.07997 * 120.07994 * 179.97438 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6528 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 1.4689 -2.1386 0.0005 9 7 3.3798 -1.2033 0.0000 10 6 4.0537 -2.3705 0.0000 11 8 3.4472 -3.4209 0.0000 12 6 5.5607 -2.3706 0.0000 13 8 6.0447 -3.7395 0.0006 14 6 7.3802 -3.9160 0.0002 15 8 8.1201 -2.9527 -0.0003 16 6 7.9448 -5.2811 0.0013 17 6 9.3286 -5.4676 0.0003 18 6 9.8491 -6.7451 0.0076 19 6 9.0033 -7.8402 0.0105 20 6 9.5793 -9.2327 0.0179 21 7 9.7627 -9.6779 1.4016 22 6 9.2577 -10.8043 1.9467 23 6 9.6567 -10.8520 3.2389 24 6 10.4241 -9.7109 3.4947 25 7 10.4883 -9.0064 2.3940 26 6 7.6311 -7.6625 0.0054 27 6 7.0971 -6.3907 -0.0030 28 1 -0.4850 0.8401 -0.0004 29 1 3.8649 -0.3633 -0.0004 30 1 5.9240 -1.8567 0.8900 31 1 5.9240 -1.8567 -0.8900 32 1 9.9899 -4.6137 -0.0017 33 1 10.9192 -6.8908 0.0114 34 1 8.8970 -9.9109 -0.4945 35 1 10.5418 -9.2305 -0.4936 36 1 8.6465 -11.5377 1.4416 37 1 9.4205 -11.6311 3.9484 38 1 10.8839 -9.4554 4.4379 39 1 6.9766 -8.5216 0.0081 40 1 6.0259 -6.2534 -0.0074 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731238177.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:13 Heat of formation + Delta-G solvation = -3.259356 kcal Electronic energy + Delta-G solvation = -25743.900378 eV Core-core repulsion = 21719.239743 eV Total energy + Delta-G solvation = -4024.660635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 3.61 seconds Orbital eigenvalues (eV) -41.45731 -40.59798 -39.22667 -38.25910 -36.21128 -34.51525 -34.07543 -31.82201 -31.47501 -31.26418 -30.23598 -28.73221 -27.00215 -24.62256 -23.31767 -23.01596 -21.35085 -21.25220 -20.58404 -19.66542 -18.63409 -18.13587 -17.64852 -16.95248 -16.42423 -16.17869 -15.78363 -15.48104 -15.04023 -14.82503 -14.66470 -14.32331 -14.21707 -14.01499 -13.79101 -13.55200 -13.14019 -12.95935 -12.91574 -12.68522 -12.35655 -12.32753 -12.21283 -12.02219 -11.35818 -11.27345 -10.94866 -10.65958 -10.59273 -10.55403 -10.06078 -9.75099 -9.68844 -9.32092 -9.27013 -8.90407 -8.68689 -8.30502 -6.40268 -3.93219 0.32559 1.08913 1.59479 2.09552 2.54745 2.56115 2.58076 2.98368 3.02945 3.11633 3.51900 3.55939 3.95948 4.02980 4.19015 4.35961 4.49691 4.56951 4.61932 4.74700 4.81420 4.88872 5.07771 5.10170 5.19878 5.28339 5.32595 5.44855 5.48189 5.53301 5.65532 5.70617 5.71070 5.92346 6.05487 6.12269 6.34157 6.44057 6.51188 6.65653 7.40507 7.43474 7.74291 7.99490 8.46531 8.82410 9.28679 9.64020 10.71909 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.024233 B = 0.001999 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.156673 B =14002.873735 C =14491.751679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.308 4.308 8 H 0.122 0.878 9 N -0.579 5.579 10 C 0.448 3.552 11 O -0.558 6.558 12 C 0.058 3.942 13 O -0.319 6.319 14 C 0.504 3.496 15 O -0.510 6.510 16 C -0.108 4.108 17 C -0.058 4.058 18 C -0.098 4.098 19 C -0.083 4.083 20 C 0.173 3.827 21 N -0.370 5.370 22 C 0.052 3.948 23 C -0.275 4.275 24 C 0.043 3.957 25 N -0.288 5.288 26 C -0.113 4.113 27 C -0.060 4.060 28 H 0.276 0.724 29 H 0.373 0.627 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.173 0.827 37 H 0.146 0.854 38 H 0.182 0.818 39 H 0.131 0.869 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.354 -18.831 0.919 29.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.436 4.436 8 H 0.140 0.860 9 N -0.219 5.219 10 C 0.233 3.767 11 O -0.439 6.439 12 C -0.019 4.019 13 O -0.234 6.234 14 C 0.349 3.651 15 O -0.400 6.400 16 C -0.110 4.110 17 C -0.076 4.076 18 C -0.116 4.116 19 C -0.084 4.084 20 C 0.052 3.948 21 N -0.153 5.153 22 C -0.093 4.093 23 C -0.304 4.304 24 C -0.144 4.144 25 N -0.109 5.109 26 C -0.132 4.132 27 C -0.078 4.078 28 H 0.086 0.914 29 H 0.206 0.794 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.158 0.842 33 H 0.151 0.849 34 H 0.126 0.874 35 H 0.114 0.886 36 H 0.191 0.809 37 H 0.164 0.836 38 H 0.199 0.801 39 H 0.149 0.851 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 22.339 -18.032 0.211 28.710 hybrid contribution 0.187 0.855 0.477 0.997 sum 22.526 -17.177 0.688 28.336 Atomic orbital electron populations 1.69615 1.05646 1.27773 1.48330 1.25042 0.95533 0.98082 0.97255 0.86678 0.79875 0.83849 0.79106 1.19389 1.19925 1.19342 1.19419 0.78646 0.96876 1.48687 0.85999 1.42032 1.07649 1.05703 1.66509 1.19164 0.86863 0.85155 0.85520 1.90597 1.69026 1.30716 1.53598 1.22784 0.95177 0.80220 1.03740 1.86591 1.22369 1.31339 1.83067 1.21233 0.81150 0.89764 0.72962 1.90816 1.60678 1.42295 1.46182 1.19214 0.94000 0.90330 1.07425 1.21265 0.93319 0.97996 0.95059 1.20930 1.00058 0.91199 0.99450 1.20025 0.93918 0.94549 0.99900 1.20635 1.02564 0.93345 0.78218 1.48746 1.39874 1.16964 1.09699 1.22603 1.00144 0.91403 0.95171 1.21533 1.09251 1.02999 0.96621 1.23929 0.99313 0.93605 0.97544 1.77400 1.16400 1.20081 0.97021 1.21034 0.94110 0.97549 1.00459 1.21640 1.01251 0.91193 0.93697 0.91376 0.79362 0.89284 0.89256 0.84199 0.84875 0.87351 0.88569 0.80944 0.83582 0.80135 0.85097 0.83374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.09 13.96 55.50 0.77 -24.32 16 2 C 0.04 1.21 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 19.06 27.74 -169.99 -4.71 14.35 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.32 6.52 56.52 0.37 -4.95 16 7 C -0.31 -8.61 10.16 -14.94 -0.15 -8.76 16 8 H 0.12 3.87 7.39 -52.49 -0.39 3.49 16 9 N -0.58 -13.75 5.09 -10.96 -0.06 -13.81 16 10 C 0.45 10.38 7.86 -10.98 -0.09 10.29 16 11 O -0.56 -15.21 16.08 -14.11 -0.23 -15.43 16 12 C 0.06 1.06 5.95 36.01 0.21 1.27 16 13 O -0.32 -5.82 9.01 -47.19 -0.43 -6.24 16 14 C 0.50 8.16 7.90 34.61 0.27 8.43 16 15 O -0.51 -8.88 16.14 -19.24 -0.31 -9.19 16 16 C -0.11 -1.44 5.87 -104.98 -0.62 -2.06 16 17 C -0.06 -0.65 9.60 -39.17 -0.38 -1.03 16 18 C -0.10 -0.91 9.68 -39.64 -0.38 -1.29 16 19 C -0.08 -0.71 5.32 -104.53 -0.56 -1.26 16 20 C 0.17 1.04 6.63 -5.19 -0.03 1.00 16 21 N -0.37 -3.09 3.67 -62.54 -0.23 -3.32 16 22 C 0.05 0.36 11.45 -17.22 -0.20 0.16 16 23 C -0.27 -2.05 10.80 -40.01 -0.43 -2.49 16 24 C 0.04 0.37 12.03 -17.36 -0.21 0.16 16 25 N -0.29 -3.06 12.41 30.63 0.38 -2.68 16 26 C -0.11 -1.06 9.68 -39.64 -0.38 -1.44 16 27 C -0.06 -0.72 9.62 -39.17 -0.38 -1.09 16 28 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.37 7.72 5.76 -40.82 -0.24 7.49 16 30 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.14 1.50 7.65 -52.49 -0.40 1.10 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.11 0.33 8.01 -51.93 -0.42 -0.08 16 35 H 0.10 0.45 8.08 -51.93 -0.42 0.03 16 36 H 0.17 0.57 8.06 -52.48 -0.42 0.15 16 37 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 39 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 40 H 0.15 1.88 7.61 -52.49 -0.40 1.49 16 LS Contribution 362.24 15.07 5.46 5.46 Total: -1.00 -36.07 362.24 -7.15 -43.22 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -4.39 Total: 8.95 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: -3.41 Total: 3.02 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.87 Total: -44.13 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -0.96 Total: -30.87 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.71 Total: 14.35 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.07 -7.15 -43.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731238177.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.956 kcal (2) G-P(sol) polarization free energy of solvation -36.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.61 seconds