Wall clock time and date at job start Tue Mar 31 2020 06:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35288 * 126.19335 * 2 1 4 4 C 1.39959 * 107.97123 * 180.28374 * 3 2 1 5 5 N 1.30832 * 108.36439 * 359.74030 * 4 3 2 6 6 N 1.35840 * 126.19591 * 179.84001 * 2 1 3 7 7 C 1.39813 * 126.10173 * 359.97438 * 6 2 1 8 8 C 1.39063 * 119.92117 * 144.72141 * 7 6 2 9 9 C 1.37704 * 120.08862 * 180.02562 * 8 7 6 10 10 C 1.39760 * 119.91173 * 0.23004 * 9 8 7 11 11 C 1.47536 * 120.08169 * 179.74617 * 10 9 8 12 12 O 1.21499 * 120.00157 * 359.97438 * 11 10 9 13 13 O 1.34742 * 120.00198 * 179.97438 * 11 10 9 14 14 C 1.45193 * 117.00244 * 179.97438 * 13 11 10 15 15 C 1.50702 * 109.47194 * 180.02562 * 14 13 11 16 16 O 1.21293 * 120.00073 * 0.02562 * 15 14 13 17 17 N 1.34783 * 119.99733 * 180.02562 * 15 14 13 18 18 C 1.37101 * 119.99681 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00042 * 359.97438 * 18 17 15 20 20 C 1.38945 * 119.99904 * 180.02562 * 18 17 15 21 21 N 1.31406 * 119.99943 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00060 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47215 * 89.99160 * 22 20 18 24 24 H 1.48495 * 109.47281 * 209.99574 * 22 20 18 25 25 H 1.48500 * 109.46897 * 329.99599 * 22 20 18 26 26 C 1.39773 * 119.83659 * 359.49199 * 10 9 8 27 27 C 1.37700 * 119.91164 * 0.55250 * 26 10 9 28 28 H 1.08999 * 109.47241 * 270.16028 * 1 2 3 29 29 H 1.09002 * 109.47213 * 30.16362 * 1 2 3 30 30 H 1.09001 * 109.47265 * 150.15887 * 1 2 3 31 31 H 1.08006 * 126.01297 * 0.02562 * 3 2 1 32 32 H 1.07995 * 125.81639 * 179.73296 * 4 3 2 33 33 H 1.08013 * 119.95760 * 359.97438 * 8 7 6 34 34 H 1.08002 * 120.04172 * 179.97438 * 9 8 7 35 35 H 1.08998 * 109.47621 * 300.00897 * 14 13 11 36 36 H 1.09005 * 109.47219 * 60.00710 * 14 13 11 37 37 H 0.96998 * 120.00094 * 359.97438 * 17 15 14 38 38 H 0.97006 * 120.00045 * 180.02562 * 21 20 18 39 39 H 1.07999 * 120.04330 * 180.23358 * 26 10 9 40 40 H 1.07996 * 119.95905 * 179.70315 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3058 1.0918 0.0000 4 6 3.6352 0.6542 -0.0066 5 7 3.6385 -0.6541 -0.0048 6 7 2.3092 -1.0962 0.0031 7 6 1.8840 -2.4282 0.0073 8 6 2.6102 -3.3903 -0.6861 9 6 2.1943 -4.7030 -0.6847 10 6 1.0381 -5.0670 0.0109 11 6 0.5860 -6.4714 0.0102 12 8 1.2188 -7.3131 -0.5959 13 8 -0.5287 -6.8207 0.6818 14 6 -0.9142 -8.2198 0.6370 15 6 -2.1749 -8.4194 1.4382 16 8 -2.6974 -7.4753 1.9920 17 7 -2.7218 -9.6472 1.5392 18 6 -3.8690 -9.8287 2.2676 19 1 -4.3342 -8.9880 2.7608 20 6 -4.4325 -11.0944 2.3722 21 7 -3.8662 -12.1174 1.7726 22 14 -5.9953 -11.3419 3.3653 23 1 -7.1762 -11.1606 2.4833 24 1 -6.0082 -12.7135 3.9342 25 1 -6.0437 -10.3482 4.4678 26 6 0.3140 -4.0983 0.7115 27 6 0.7357 -2.7874 0.7047 28 1 -0.3634 0.0029 1.0276 29 1 -0.3634 0.8885 -0.5164 30 1 -0.3634 -0.8914 -0.5114 31 1 1.9758 2.1202 0.0004 32 1 4.5093 1.2884 -0.0123 33 1 3.5012 -3.1074 -1.2273 34 1 2.7586 -5.4495 -1.2239 35 1 -1.0907 -8.5152 -0.3972 36 1 -0.1154 -8.8305 1.0579 37 1 -2.3041 -10.4021 1.0960 38 1 -4.2598 -13.0010 1.8453 39 1 -0.5779 -4.3766 1.2533 40 1 0.1741 -2.0375 1.2418 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731239202.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:29 Heat of formation + Delta-G solvation = -10.893482 kcal Electronic energy + Delta-G solvation = -25878.393767 eV Core-core repulsion = 21853.402092 eV Total energy + Delta-G solvation = -4024.991675 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 9.86 seconds Orbital eigenvalues (eV) -41.95452 -40.52394 -39.04240 -38.07387 -36.13813 -34.06508 -34.01632 -32.83719 -31.42082 -31.32794 -29.96173 -28.25122 -27.47460 -25.04180 -24.23714 -23.33671 -21.60247 -21.06373 -20.29317 -19.61463 -18.17589 -18.09457 -17.77875 -16.80881 -16.35759 -15.92650 -15.73527 -15.25508 -15.15126 -14.80848 -14.50887 -14.22178 -14.12526 -13.99651 -13.81990 -13.57241 -13.35303 -13.18036 -12.95827 -12.76093 -12.37461 -12.29332 -12.07205 -11.64365 -11.55168 -11.15538 -11.06952 -10.57949 -10.47329 -10.45754 -10.43477 -10.31658 -9.63027 -9.47301 -9.29215 -8.60463 -8.55870 -8.10947 -6.52244 -3.94427 0.10695 0.93667 1.47509 1.96185 2.38824 2.44090 2.60155 3.11459 3.22006 3.27883 3.41528 3.70952 4.08300 4.13147 4.20610 4.45815 4.46884 4.53496 4.64865 4.86103 4.90987 5.02889 5.06579 5.12766 5.13213 5.23124 5.26437 5.43213 5.47754 5.61120 5.66414 5.67761 5.74252 5.82852 5.96761 6.04065 6.20334 6.26983 6.51802 6.76376 7.24071 7.45515 7.75729 7.92448 8.45580 9.04507 9.36594 9.86099 10.64865 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.026133 B = 0.001993 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.166554 B =14043.884128 C =14973.034455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.089 3.911 3 C -0.266 4.266 4 C 0.057 3.943 5 N -0.288 5.288 6 N -0.330 5.330 7 C 0.184 3.816 8 C -0.126 4.126 9 C -0.035 4.035 10 C -0.122 4.122 11 C 0.505 3.495 12 O -0.508 6.508 13 O -0.320 6.320 14 C 0.061 3.939 15 C 0.438 3.562 16 O -0.577 6.577 17 N -0.552 5.552 18 C -0.303 4.303 19 H 0.106 0.894 20 C 0.025 3.975 21 N -0.896 5.896 22 Si 0.934 3.066 23 H -0.277 1.277 24 H -0.283 1.283 25 H -0.268 1.268 26 C -0.034 4.034 27 C -0.147 4.147 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.154 0.846 32 H 0.189 0.811 33 H 0.142 0.858 34 H 0.149 0.851 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.395 0.605 38 H 0.274 0.726 39 H 0.157 0.843 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.007 22.209 -5.715 25.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.034 4.034 3 C -0.294 4.294 4 C -0.130 4.130 5 N -0.106 5.106 6 N -0.108 5.108 7 C 0.091 3.909 8 C -0.146 4.146 9 C -0.053 4.053 10 C -0.124 4.124 11 C 0.350 3.650 12 O -0.398 6.398 13 O -0.235 6.235 14 C -0.016 4.016 15 C 0.223 3.777 16 O -0.461 6.461 17 N -0.189 5.189 18 C -0.432 4.432 19 H 0.124 0.876 20 C -0.178 4.178 21 N -0.537 5.537 22 Si 0.761 3.239 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.193 1.193 26 C -0.053 4.053 27 C -0.167 4.167 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.171 0.829 32 H 0.206 0.794 33 H 0.160 0.840 34 H 0.166 0.834 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.229 0.771 38 H 0.084 0.916 39 H 0.175 0.825 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 12.455 21.248 -5.507 25.237 hybrid contribution -0.774 -0.066 0.112 0.785 sum 11.681 21.182 -5.394 24.784 Atomic orbital electron populations 1.20689 0.86769 1.04626 1.03879 1.21453 0.95041 0.86515 1.00371 1.21341 0.92216 0.99145 1.16674 1.24046 0.98435 0.92045 0.98507 1.77528 0.95504 1.13149 1.24383 1.45950 1.04532 1.03461 1.56831 1.17704 0.95186 0.80814 0.97147 1.20882 1.01392 0.91795 1.00509 1.21174 0.93505 0.95675 0.94974 1.19241 0.98277 0.90817 1.04041 1.21056 0.78875 0.88956 0.76160 1.90836 1.55448 1.51869 1.41693 1.86577 1.40700 1.30029 1.66174 1.22790 0.98089 0.78604 1.02120 1.19290 0.86704 0.84769 0.86936 1.90554 1.64244 1.40590 1.50724 1.41705 1.24306 1.07103 1.45777 1.19721 1.00909 0.95376 1.27176 0.87591 1.25319 0.99756 0.94889 0.97806 1.69613 1.40529 1.00428 1.43096 0.85792 0.80796 0.77680 0.79646 1.20255 1.20806 1.19278 1.21519 0.98691 0.90760 0.94294 1.21076 0.97234 0.97422 1.00975 0.89505 0.89216 0.90246 0.82862 0.79382 0.84038 0.83379 0.89361 0.89360 0.77126 0.91600 0.82489 0.84106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.58 8.60 36.00 0.31 -0.27 16 2 C 0.09 0.77 6.77 -81.87 -0.55 0.22 16 3 C -0.27 -2.03 10.72 -39.99 -0.43 -2.46 16 4 C 0.06 0.48 12.02 -17.33 -0.21 0.27 16 5 N -0.29 -3.24 12.33 30.64 0.38 -2.86 16 6 N -0.33 -3.56 3.74 -6.84 -0.03 -3.58 16 7 C 0.18 1.98 6.29 -83.60 -0.53 1.45 16 8 C -0.13 -1.32 9.73 -39.47 -0.38 -1.71 16 9 C -0.03 -0.38 9.58 -39.21 -0.38 -0.76 16 10 C -0.12 -1.56 5.87 -104.96 -0.62 -2.18 16 11 C 0.51 8.03 7.89 34.52 0.27 8.30 16 12 O -0.51 -8.83 16.13 -19.27 -0.31 -9.14 16 13 O -0.32 -5.79 9.00 -47.29 -0.43 -6.22 16 14 C 0.06 1.15 5.95 36.01 0.21 1.36 16 15 C 0.44 10.34 7.86 -10.98 -0.09 10.25 16 16 O -0.58 -15.58 16.08 -14.11 -0.23 -15.81 16 17 N -0.55 -13.73 5.29 -10.96 -0.06 -13.79 16 18 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 19 H 0.11 3.00 7.16 -52.49 -0.38 2.63 16 20 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 21 N -0.90 -23.80 13.05 55.50 0.72 -23.08 16 22 Si 0.93 20.47 29.55 -169.99 -5.02 15.44 16 23 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 26 C -0.03 -0.38 9.61 -39.20 -0.38 -0.76 16 27 C -0.15 -1.44 8.27 -39.47 -0.33 -1.77 16 28 H 0.09 0.40 7.74 -51.93 -0.40 -0.01 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.48 6.92 -51.93 -0.36 0.12 16 31 H 0.15 0.77 8.06 -52.48 -0.42 0.35 16 32 H 0.19 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.14 1.37 8.06 -52.48 -0.42 0.95 16 34 H 0.15 1.51 7.64 -52.49 -0.40 1.11 16 35 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.40 9.33 7.90 -40.82 -0.32 9.01 16 38 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 39 H 0.16 1.82 7.60 -52.49 -0.40 1.42 16 40 H 0.14 1.10 6.11 -52.49 -0.32 0.78 16 LS Contribution 358.81 15.07 5.41 5.41 Total: -1.00 -33.67 358.81 -7.14 -40.81 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -4.25 Total: 8.72 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -3.33 Total: 4.11 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 1.02 Total: -43.32 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -0.96 Total: -31.17 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.67 -7.14 -40.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731239202.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.918 kcal (2) G-P(sol) polarization free energy of solvation -33.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.86 seconds