Wall clock time and date at job start Tue Mar 31 2020 06:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38138 * 126.31764 * 2 1 4 4 C 1.47269 * 126.42437 * 0.03164 * 3 2 1 5 5 O 1.21538 * 119.99536 * 359.97438 * 4 3 2 6 6 O 1.34756 * 120.00757 * 179.97438 * 4 3 2 7 7 C 1.45191 * 117.00343 * 179.97438 * 6 4 3 8 8 C 1.50707 * 109.46999 * 179.97438 * 7 6 4 9 9 O 1.21286 * 120.00118 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99847 * 180.02562 * 8 7 6 11 11 C 1.37092 * 120.00138 * 179.97438 * 10 8 7 12 12 H 1.08010 * 119.99883 * 0.02562 * 11 10 8 13 13 C 1.38946 * 120.00345 * 179.97438 * 11 10 8 14 14 N 1.31414 * 119.99976 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99981 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47086 * 60.00603 * 15 13 11 17 17 H 1.48504 * 109.46972 * 179.97438 * 15 13 11 18 18 H 1.48492 * 109.47153 * 299.99822 * 15 13 11 19 19 C 1.41388 * 107.15879 * 180.02562 * 3 2 1 20 20 N 1.30454 * 108.05416 * 0.02562 * 19 3 2 21 21 N 1.34505 * 126.31017 * 180.02562 * 2 1 3 22 22 C 1.40145 * 125.76465 * 359.71016 * 21 2 1 23 23 C 1.38847 * 120.06789 * 324.72317 * 22 21 2 24 24 C 1.38120 * 119.93219 * 179.74437 * 23 22 21 25 25 C 1.38278 * 120.06794 * 0.55307 * 24 23 22 26 26 C 1.38287 * 120.13581 * 359.70364 * 25 24 23 27 27 C 1.38111 * 120.06453 * 0.02562 * 26 25 24 28 28 H 1.09000 * 109.46853 * 269.97003 * 1 2 3 29 29 H 1.08991 * 109.47015 * 29.96780 * 1 2 3 30 30 H 1.08998 * 109.47262 * 149.97206 * 1 2 3 31 31 H 1.09007 * 109.47405 * 299.99575 * 7 6 4 32 32 H 1.09001 * 109.47448 * 59.99788 * 7 6 4 33 33 H 0.97000 * 120.00062 * 359.97438 * 10 8 7 34 34 H 0.97005 * 119.99765 * 179.97438 * 14 13 11 35 35 H 1.07996 * 125.97196 * 180.02562 * 19 3 2 36 36 H 1.07999 * 120.03115 * 0.02562 * 23 22 21 37 37 H 1.07996 * 119.96495 * 180.29791 * 24 23 22 38 38 H 1.08000 * 119.93504 * 179.71936 * 25 24 23 39 39 H 1.07995 * 119.96473 * 180.02562 * 26 25 24 40 40 H 1.07999 * 120.03530 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3252 1.1130 0.0000 4 6 1.8883 2.5194 0.0007 5 8 0.7028 2.7874 0.0008 6 8 2.8027 3.5092 0.0011 7 6 2.2999 4.8713 0.0011 8 6 3.4589 5.8346 0.0023 9 8 4.5967 5.4145 0.0035 10 7 3.2310 7.1630 0.0031 11 6 4.2853 8.0393 0.0046 12 1 5.2985 7.6652 0.0048 13 6 4.0504 9.4088 0.0049 14 7 2.8177 9.8640 0.0041 15 14 5.4871 10.6028 0.0078 16 1 6.3171 10.3815 -1.2036 17 1 4.9728 11.9960 0.0069 18 1 6.3132 10.3804 1.2214 19 6 3.6608 0.6490 -0.0006 20 7 3.6356 -0.6553 -0.0015 21 7 2.3035 -1.0839 -0.0005 22 6 1.8722 -2.4173 0.0047 23 6 0.7276 -2.7755 0.7042 24 6 0.3021 -4.0895 0.7031 25 6 1.0211 -5.0500 0.0156 26 6 2.1645 -4.6973 -0.6777 27 6 2.5919 -3.3840 -0.6849 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3633 0.8902 -0.5133 30 1 -0.3634 -0.8897 -0.5142 31 1 1.6923 5.0344 -0.8891 32 1 1.6917 5.0341 0.8909 33 1 2.3211 7.4990 0.0025 34 1 2.6537 10.8201 0.0047 35 1 4.5468 1.2664 -0.0004 36 1 0.1680 -2.0266 1.2450 37 1 -0.5908 -4.3678 1.2430 38 1 0.6889 -6.0776 0.0199 39 1 2.7237 -5.4496 -1.2140 40 1 3.4847 -3.1091 -1.2268 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731239264.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:38 Heat of formation + Delta-G solvation = -12.119670 kcal Electronic energy + Delta-G solvation = -26076.933223 eV Core-core repulsion = 22051.888376 eV Total energy + Delta-G solvation = -4025.044847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.08014 -39.96774 -39.30043 -38.02814 -35.96918 -34.17290 -33.95499 -32.66545 -31.36203 -31.32957 -29.77759 -28.54139 -27.50791 -24.73406 -23.83016 -23.56184 -22.48071 -20.94130 -19.84131 -19.50838 -18.29374 -18.00773 -17.14346 -16.54327 -16.40804 -16.26021 -15.88646 -15.42714 -15.28954 -14.71408 -14.43796 -14.37186 -14.04025 -13.95857 -13.87006 -13.45276 -13.32078 -13.04219 -12.93042 -12.59920 -12.23416 -12.08077 -11.99110 -11.72397 -11.59060 -11.09097 -11.08762 -10.47784 -10.46613 -10.33123 -10.31510 -10.23604 -9.56365 -9.54801 -9.27551 -8.65336 -8.47987 -8.04884 -6.46843 -3.88716 0.35358 0.78879 1.35771 1.86392 1.95598 2.85499 3.16844 3.18504 3.20751 3.24900 3.30178 3.78277 4.12053 4.15410 4.20173 4.36177 4.50404 4.57794 4.62300 4.81126 4.82015 5.00335 5.04375 5.10662 5.17369 5.18572 5.34699 5.43583 5.49376 5.63708 5.75789 5.75907 5.78711 5.79978 5.93877 6.10485 6.19902 6.23270 6.68988 6.72718 7.24757 7.50597 7.92913 8.04157 8.52338 9.10333 9.42993 9.93193 10.70339 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.040155 B = 0.001950 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.131293 B =14355.950813 C =14951.452756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.167 3.833 3 C -0.270 4.270 4 C 0.542 3.458 5 O -0.522 6.522 6 O -0.320 6.320 7 C 0.063 3.937 8 C 0.439 3.561 9 O -0.576 6.576 10 N -0.553 5.553 11 C -0.302 4.302 12 H 0.105 0.895 13 C 0.025 3.975 14 N -0.898 5.898 15 Si 0.934 3.066 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.272 1.272 19 C 0.119 3.881 20 N -0.295 5.295 21 N -0.317 5.317 22 C 0.148 3.852 23 C -0.129 4.129 24 C -0.099 4.099 25 C -0.119 4.119 26 C -0.102 4.102 27 C -0.105 4.105 28 H 0.092 0.908 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.395 0.605 34 H 0.274 0.726 35 H 0.209 0.791 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.130 0.870 39 H 0.133 0.867 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.545 -27.534 -0.067 28.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.038 3.962 3 C -0.282 4.282 4 C 0.387 3.613 5 O -0.413 6.413 6 O -0.234 6.234 7 C -0.014 4.014 8 C 0.224 3.776 9 O -0.459 6.459 10 N -0.191 5.191 11 C -0.431 4.431 12 H 0.123 0.877 13 C -0.178 4.178 14 N -0.538 5.538 15 Si 0.761 3.239 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.198 1.198 19 C -0.070 4.070 20 N -0.111 5.111 21 N -0.090 5.090 22 C 0.057 3.943 23 C -0.149 4.149 24 C -0.118 4.118 25 C -0.138 4.138 26 C -0.120 4.120 27 C -0.125 4.125 28 H 0.110 0.890 29 H 0.128 0.872 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.228 0.772 34 H 0.084 0.916 35 H 0.225 0.775 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.475 -28.630 -0.073 29.590 hybrid contribution -0.389 1.787 0.034 1.829 sum -7.864 -26.843 -0.039 27.972 Atomic orbital electron populations 1.20913 0.85624 1.05472 1.04420 1.21557 0.95001 0.85574 0.94108 1.19064 0.93456 0.90495 1.25160 1.19851 0.83771 0.85167 0.72466 1.90783 1.17925 1.84695 1.47943 1.86578 1.38106 1.15400 1.83344 1.22733 0.96956 0.78194 1.03532 1.19334 0.89219 0.83209 0.85833 1.90556 1.22760 1.77475 1.55155 1.41690 1.10125 1.03300 1.63959 1.19675 0.88995 0.86250 1.48201 0.87672 1.25303 0.97793 0.97721 0.96953 1.69610 1.19158 1.15336 1.49737 0.85861 0.80379 0.78483 0.79170 1.19786 1.20908 1.19780 1.24501 0.97976 0.91191 0.93303 1.77401 0.94310 1.13414 1.25985 1.45629 1.04869 1.03585 1.54912 1.17494 0.96370 0.80471 0.99975 1.21192 0.96540 0.97794 0.99410 1.21039 1.00025 0.91746 0.98997 1.21317 0.95261 0.99946 0.97259 1.21115 0.96600 0.95365 0.98937 1.21063 1.00399 0.92420 0.98584 0.88969 0.87164 0.90369 0.89499 0.89502 0.77156 0.91624 0.77471 0.84715 0.84770 0.85217 0.84870 0.84603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 8.05 36.01 0.29 -0.69 16 2 C 0.17 2.06 6.83 -81.46 -0.56 1.51 16 3 C -0.27 -3.94 6.13 -105.07 -0.64 -4.59 16 4 C 0.54 9.11 7.95 34.40 0.27 9.38 16 5 O -0.52 -9.04 14.63 -19.30 -0.28 -9.32 16 6 O -0.32 -6.11 9.60 -47.32 -0.45 -6.56 16 7 C 0.06 1.22 5.95 36.01 0.21 1.43 16 8 C 0.44 10.63 7.86 -10.98 -0.09 10.54 16 9 O -0.58 -15.99 16.08 -14.11 -0.23 -16.22 16 10 N -0.55 -14.03 5.29 -10.96 -0.06 -14.09 16 11 C -0.30 -8.36 9.68 -14.94 -0.14 -8.51 16 12 H 0.11 3.03 7.16 -52.48 -0.38 2.65 16 13 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 14 N -0.90 -24.14 13.05 55.50 0.72 -23.41 16 15 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 16 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 17 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 C 0.12 1.65 11.87 -16.94 -0.20 1.45 16 20 N -0.30 -4.06 12.25 30.88 0.38 -3.69 16 21 N -0.32 -3.89 3.70 -6.50 -0.02 -3.92 16 22 C 0.15 1.47 6.25 -83.60 -0.52 0.95 16 23 C -0.13 -0.98 8.26 -39.40 -0.33 -1.31 16 24 C -0.10 -0.56 10.04 -39.61 -0.40 -0.96 16 25 C -0.12 -0.63 10.04 -39.55 -0.40 -1.03 16 26 C -0.10 -0.63 10.04 -39.61 -0.40 -1.03 16 27 C -0.10 -0.92 9.75 -39.40 -0.38 -1.30 16 28 H 0.09 0.70 7.71 -51.93 -0.40 0.30 16 29 H 0.11 1.16 6.50 -51.93 -0.34 0.83 16 30 H 0.08 0.56 6.89 -51.93 -0.36 0.20 16 31 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 34 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.21 2.60 8.06 -52.49 -0.42 2.17 16 36 H 0.14 0.88 6.09 -52.49 -0.32 0.56 16 37 H 0.13 0.43 8.06 -52.49 -0.42 0.00 16 38 H 0.13 0.37 8.06 -52.49 -0.42 -0.05 16 39 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 40 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 356.82 15.07 5.38 5.38 Total: -1.00 -33.92 356.82 -7.17 -41.10 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -4.21 Total: 8.53 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: -3.38 Total: 6.41 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 1.02 Total: -45.10 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.96 Total: -32.10 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.92 -7.17 -41.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731239264.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.975 kcal (2) G-P(sol) polarization free energy of solvation -33.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds