Wall clock time and date at job start Tue Mar 31 2020 06:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86798 * 119.99808 * 2 1 4 4 H 1.48500 * 109.47529 * 240.00089 * 3 2 1 5 5 H 1.48505 * 109.47107 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47230 * 120.00121 * 3 2 1 7 7 C 1.38944 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08012 * 119.99644 * 179.97438 * 7 2 1 9 9 N 1.37093 * 120.00595 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00505 * 179.97438 * 9 7 2 11 11 O 1.21294 * 119.99531 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00215 * 179.97438 * 10 9 7 13 13 O 1.45197 * 109.47065 * 180.02562 * 12 10 9 14 14 C 1.34235 * 116.99921 * 180.02562 * 13 12 10 15 15 O 1.20820 * 119.99739 * 0.02562 * 14 13 12 16 16 C 1.50695 * 120.00058 * 180.02562 * 14 13 12 17 17 C 1.50700 * 109.47379 * 180.02562 * 16 14 13 18 18 C 1.38271 * 119.93436 * 89.99456 * 17 16 14 19 19 C 1.38121 * 120.06786 * 180.02562 * 18 17 16 20 20 C 1.38838 * 119.93302 * 0.02562 * 19 18 17 21 21 N 1.40179 * 120.06716 * 179.97438 * 20 19 18 22 22 C 1.35233 * 126.05401 * 179.97438 * 21 20 19 23 23 C 1.35316 * 107.71417 * 180.02562 * 22 21 20 24 24 C 1.39925 * 107.93089 * 359.97438 * 23 22 21 25 25 N 1.30869 * 108.24316 * 0.02562 * 24 23 22 26 26 C 1.38845 * 119.86452 * 0.27564 * 20 19 18 27 27 C 1.38123 * 119.93189 * 359.42683 * 26 20 19 28 28 H 0.97003 * 120.00117 * 0.02562 * 1 2 3 29 29 H 0.97001 * 119.99892 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.46902 * 60.00066 * 12 10 9 31 31 H 1.09006 * 109.47136 * 300.00537 * 12 10 9 32 32 H 1.09005 * 109.47343 * 60.00154 * 16 14 13 33 33 H 1.08998 * 109.47148 * 300.00336 * 16 14 13 34 34 H 1.07998 * 119.96671 * 359.97438 * 18 17 16 35 35 H 1.07999 * 120.03486 * 180.02562 * 19 18 17 36 36 H 1.08002 * 126.14103 * 0.02562 * 22 21 20 37 37 H 1.08002 * 126.03356 * 180.26635 * 23 22 21 38 38 H 1.08002 * 125.87704 * 180.02562 * 24 23 22 39 39 H 1.07997 * 120.03187 * 179.72071 * 26 20 19 40 40 H 1.07992 * 119.96334 * 180.27433 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9973 -3.5578 -0.0016 11 8 3.2103 -3.5577 -0.0021 12 6 1.2439 -4.8629 -0.0010 13 8 2.1875 -5.9665 -0.0017 14 6 1.6744 -7.2069 -0.0019 15 8 0.4767 -7.3652 -0.0019 16 6 2.5924 -8.4020 -0.0020 17 6 1.7718 -9.6659 -0.0028 18 6 1.3963 -10.2441 -1.2014 19 6 0.6437 -11.4022 -1.2053 20 6 0.2637 -11.9856 -0.0041 21 7 -0.5006 -13.1607 -0.0048 22 6 -0.9348 -13.8283 1.0881 23 6 -1.6346 -14.9052 0.6617 24 6 -1.6290 -14.8961 -0.7375 25 7 -0.9497 -13.8515 -1.1377 26 6 0.6369 -11.3992 1.1978 27 6 1.3948 -10.2445 1.1953 28 1 -0.4850 0.8401 -0.0004 29 1 0.3534 -2.3907 -0.0005 30 1 0.6162 -4.9205 -0.8903 31 1 0.6182 -4.9209 0.8897 32 1 3.2213 -8.3773 0.8880 33 1 3.2213 -8.3770 -0.8920 34 1 1.6912 -9.7892 -2.1355 35 1 0.3511 -11.8536 -2.1418 36 1 -0.7554 -13.5517 2.1165 37 1 -2.1166 -15.6392 1.2903 38 1 -2.1035 -15.6256 -1.3771 39 1 0.3390 -11.8482 2.1338 40 1 1.6891 -9.7904 2.1299 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731242427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:51 Heat of formation + Delta-G solvation = -9.799286 kcal Electronic energy + Delta-G solvation = -25488.732418 eV Core-core repulsion = 21463.788190 eV Total energy + Delta-G solvation = -4024.944227 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.86208 -40.52502 -39.33440 -38.11615 -36.15720 -34.46160 -34.01307 -31.75538 -31.46212 -31.33688 -30.38074 -28.67605 -27.15758 -24.64310 -23.56697 -23.34184 -21.28271 -20.94580 -20.44191 -19.58928 -18.65346 -18.08790 -17.59784 -16.57346 -16.52321 -15.71747 -15.61616 -15.57438 -15.43750 -15.36884 -14.52589 -14.34220 -14.08768 -13.95694 -13.87588 -13.74912 -13.13739 -13.12233 -12.74358 -12.66904 -12.11156 -12.04729 -11.91791 -11.62905 -11.51266 -11.12218 -11.04050 -10.67503 -10.49969 -10.42502 -10.39599 -10.28828 -9.60791 -9.50451 -9.35586 -8.54058 -8.33630 -8.09597 -6.50998 -3.93261 0.43663 1.00246 1.77463 2.01540 2.29235 2.39705 2.72894 3.14576 3.22068 3.26512 3.47540 3.72535 4.07890 4.11281 4.30543 4.33357 4.47834 4.57491 4.69843 4.81235 4.96447 5.04145 5.09540 5.13900 5.17152 5.27290 5.32797 5.39721 5.52104 5.54497 5.63904 5.68445 5.83804 5.89453 6.04422 6.17717 6.24886 6.35673 6.62631 6.81330 7.24426 7.46396 7.82987 7.95001 8.47273 9.05763 9.38029 9.87961 10.66082 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.036228 B = 0.001707 C = 0.001677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.687765 B =16399.585019 C =16688.023372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.552 5.552 10 C 0.438 3.562 11 O -0.577 6.577 12 C 0.061 3.939 13 O -0.326 6.326 14 C 0.457 3.543 15 O -0.507 6.507 16 C -0.073 4.073 17 C -0.080 4.080 18 C -0.077 4.077 19 C -0.116 4.116 20 C 0.157 3.843 21 N -0.320 5.320 22 C 0.053 3.947 23 C -0.265 4.265 24 C 0.053 3.947 25 N -0.290 5.290 26 C -0.138 4.138 27 C -0.074 4.074 28 H 0.274 0.726 29 H 0.395 0.605 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.178 0.822 37 H 0.154 0.846 38 H 0.189 0.811 39 H 0.131 0.869 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.902 -27.610 2.134 27.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.762 3.238 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.433 4.433 8 H 0.124 0.876 9 N -0.189 5.189 10 C 0.222 3.778 11 O -0.461 6.461 12 C -0.016 4.016 13 O -0.241 6.241 14 C 0.299 3.701 15 O -0.395 6.395 16 C -0.111 4.111 17 C -0.080 4.080 18 C -0.095 4.095 19 C -0.136 4.136 20 C 0.065 3.935 21 N -0.095 5.095 22 C -0.090 4.090 23 C -0.293 4.293 24 C -0.134 4.134 25 N -0.109 5.109 26 C -0.159 4.159 27 C -0.093 4.093 28 H 0.084 0.916 29 H 0.228 0.772 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.195 0.805 37 H 0.171 0.829 38 H 0.206 0.794 39 H 0.149 0.851 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.135 -26.739 1.134 26.787 hybrid contribution -0.902 0.357 0.776 1.242 sum -2.037 -26.381 1.910 26.529 Atomic orbital electron populations 1.69607 1.06006 1.28609 1.49527 1.25314 0.95688 0.99879 0.96844 0.85849 0.78741 0.80046 0.79191 1.19747 1.20870 1.19756 1.19683 0.93468 0.81781 1.48365 0.87646 1.41701 1.09369 1.04096 1.63771 1.19328 0.88339 0.84088 0.86014 1.90560 1.13408 1.86800 1.55312 1.22740 0.90835 0.84575 1.03471 1.86545 1.40372 1.14169 1.82967 1.23545 0.88664 0.84817 0.73025 1.90685 1.16785 1.86785 1.45235 1.20273 0.96623 0.86794 1.07386 1.19389 0.99514 0.95544 0.93596 1.20952 0.96200 0.94325 0.98036 1.20828 0.99398 0.96384 0.97011 1.17571 0.95163 0.85425 0.95366 1.45926 1.39812 1.19185 1.04622 1.22669 0.98525 0.94096 0.93678 1.21615 1.10013 1.02525 0.95152 1.24092 0.97709 0.96241 0.95363 1.77461 1.17556 1.08322 1.07587 1.20719 1.01611 0.97657 0.95919 1.20835 0.96188 0.94198 0.98055 0.91562 0.77160 0.89577 0.89590 0.86317 0.86315 0.84794 0.84372 0.80505 0.82863 0.79377 0.85129 0.84713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.99 13.05 55.50 0.72 -23.26 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.94 20.60 29.55 -169.99 -5.02 15.58 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.30 -8.35 9.68 -14.94 -0.14 -8.49 16 8 H 0.11 3.01 7.16 -52.48 -0.38 2.64 16 9 N -0.55 -13.90 5.29 -10.96 -0.06 -13.96 16 10 C 0.44 10.47 7.86 -10.99 -0.09 10.38 16 11 O -0.58 -15.88 16.08 -14.11 -0.23 -16.10 16 12 C 0.06 1.15 5.94 36.01 0.21 1.37 16 13 O -0.33 -5.82 9.76 -45.92 -0.45 -6.27 16 14 C 0.46 6.70 7.95 36.00 0.29 6.99 16 15 O -0.51 -8.59 15.78 -18.75 -0.30 -8.88 16 16 C -0.07 -0.72 5.94 -29.04 -0.17 -0.89 16 17 C -0.08 -0.80 4.38 -104.59 -0.46 -1.26 16 18 C -0.08 -0.77 9.69 -39.61 -0.38 -1.15 16 19 C -0.12 -1.25 9.66 -39.40 -0.38 -1.63 16 20 C 0.16 1.67 6.69 -83.59 -0.56 1.11 16 21 N -0.32 -3.40 3.80 -10.70 -0.04 -3.44 16 22 C 0.05 0.42 10.80 -17.09 -0.18 0.24 16 23 C -0.26 -1.90 10.81 -39.99 -0.43 -2.33 16 24 C 0.05 0.43 12.03 -17.33 -0.21 0.23 16 25 N -0.29 -3.25 11.87 30.64 0.36 -2.89 16 26 C -0.14 -1.24 9.46 -39.40 -0.37 -1.61 16 27 C -0.07 -0.68 9.69 -39.61 -0.38 -1.06 16 28 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.39 9.44 7.90 -40.82 -0.32 9.12 16 30 H 0.09 1.49 8.13 -51.93 -0.42 1.07 16 31 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 32 H 0.12 0.91 8.09 -51.93 -0.42 0.49 16 33 H 0.12 0.94 8.08 -51.93 -0.42 0.52 16 34 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 35 H 0.14 1.45 7.70 -52.49 -0.40 1.05 16 36 H 0.18 0.82 7.04 -52.49 -0.37 0.45 16 37 H 0.15 0.69 8.06 -52.49 -0.42 0.26 16 38 H 0.19 0.89 8.06 -52.49 -0.42 0.46 16 39 H 0.13 0.82 6.74 -52.49 -0.35 0.46 16 40 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 362.08 15.07 5.46 5.46 Total: -1.00 -35.45 362.08 -7.25 -42.70 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -4.34 Total: 8.62 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -3.36 Total: 2.46 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.99 Total: -43.55 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -0.97 Total: -31.25 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.45 -7.25 -42.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.897 kcal (2) G-P(sol) polarization free energy of solvation -35.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds