Wall clock time and date at job start Tue Mar 31 2020 06:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39963 * 125.81345 * 2 1 4 4 C 1.35278 * 107.96885 * 179.97438 * 3 2 1 5 5 N 1.35847 * 107.61466 * 0.02562 * 4 3 2 6 6 C 1.39802 * 126.10295 * 179.97438 * 5 4 3 7 7 C 1.39068 * 119.91912 * 359.73403 * 6 5 4 8 8 C 1.37699 * 120.08741 * 179.76488 * 7 6 5 9 9 C 1.39767 * 119.91382 * 0.50166 * 8 7 6 10 10 C 1.47541 * 120.08394 * 179.76981 * 9 8 7 11 11 O 1.21490 * 119.99954 * 179.97438 * 10 9 8 12 12 O 1.34741 * 119.99594 * 359.97438 * 10 9 8 13 13 C 1.45202 * 116.99530 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47116 * 180.02562 * 13 12 10 15 15 O 1.21298 * 119.99686 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00260 * 179.97438 * 14 13 12 17 17 C 1.37099 * 120.00051 * 179.97438 * 16 14 13 18 18 H 1.07997 * 120.00080 * 0.02562 * 17 16 14 19 19 C 1.38952 * 119.99714 * 180.02562 * 17 16 14 20 20 N 1.31409 * 120.00243 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99922 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47408 * 89.99675 * 21 19 17 23 23 H 1.48497 * 109.46922 * 210.00161 * 21 19 17 24 24 H 1.48507 * 109.46735 * 329.99873 * 21 19 17 25 25 C 1.39765 * 119.83376 * 359.74879 * 9 8 7 26 26 C 1.37699 * 119.91588 * 359.97438 * 25 9 8 27 27 N 1.30824 * 125.82019 * 179.69606 * 2 1 3 28 28 H 1.08999 * 109.47015 * 90.00088 * 1 2 3 29 29 H 1.09000 * 109.46646 * 209.99241 * 1 2 3 30 30 H 1.09000 * 109.47248 * 329.99958 * 1 2 3 31 31 H 1.08003 * 126.01360 * 359.97438 * 3 2 1 32 32 H 1.07995 * 126.19496 * 179.97438 * 4 3 2 33 33 H 1.08004 * 119.95545 * 359.97438 * 7 6 5 34 34 H 1.08004 * 120.04486 * 180.22942 * 8 7 6 35 35 H 1.09008 * 109.47187 * 299.99699 * 13 12 10 36 36 H 1.08997 * 109.47307 * 59.99855 * 13 12 10 37 37 H 0.96997 * 119.99834 * 359.97438 * 16 14 13 38 38 H 0.97001 * 120.00300 * 180.02562 * 20 19 17 39 39 H 1.08005 * 120.04115 * 179.97438 * 25 9 8 40 40 H 1.08003 * 119.95621 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3261 1.1350 0.0000 4 6 3.6138 0.7205 0.0006 5 7 3.6083 -0.6380 0.0003 6 6 4.7345 -1.4663 0.0003 7 6 6.0075 -0.9063 -0.0052 8 6 7.1191 -1.7188 -0.0004 9 6 6.9670 -3.1082 -0.0006 10 6 8.1556 -3.9823 -0.0006 11 8 8.0215 -5.1898 -0.0004 12 8 9.3896 -3.4414 -0.0009 13 6 10.5127 -4.3617 -0.0015 14 6 11.8018 -3.5812 -0.0011 15 8 11.7764 -2.3685 -0.0008 16 7 12.9828 -4.2305 -0.0010 17 6 14.1555 -3.5204 -0.0011 18 1 14.1330 -2.4406 -0.0009 19 6 15.3731 -4.1899 -0.0015 20 7 15.4005 -5.5037 -0.0023 21 14 16.9710 -3.2223 -0.0010 22 1 17.3945 -2.9666 1.3991 23 1 18.0224 -4.0027 -0.7016 24 1 16.7663 -1.9283 -0.7004 25 6 5.6861 -3.6674 -0.0005 26 6 4.5792 -2.8483 0.0005 27 7 2.2727 -1.0608 0.0056 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3632 -0.8901 0.5137 30 1 -0.3634 0.8900 0.5138 31 1 1.9892 2.1612 -0.0004 32 1 4.4879 1.3546 0.0003 33 1 6.1242 0.1674 -0.0097 34 1 8.1074 -1.2831 -0.0009 35 1 10.4684 -4.9897 0.8885 36 1 10.4678 -4.9893 -0.8915 37 1 13.0030 -5.2003 -0.0008 38 1 16.2505 -5.9711 -0.0022 39 1 5.5646 -4.7406 -0.0011 40 1 3.5891 -3.2797 0.0011 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731242550.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:41 Heat of formation + Delta-G solvation = -12.085521 kcal Electronic energy + Delta-G solvation = -25524.668405 eV Core-core repulsion = 21499.625039 eV Total energy + Delta-G solvation = -4025.043366 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.94007 -40.50350 -39.05195 -38.06620 -36.11692 -34.46540 -34.01941 -31.80730 -31.40518 -31.21533 -30.31227 -28.72271 -27.77303 -24.87871 -24.00084 -23.30157 -21.76540 -20.64908 -20.11133 -19.60056 -18.68413 -18.08671 -17.93353 -16.69859 -16.33550 -15.80306 -15.72748 -15.32345 -15.23413 -14.70840 -14.34290 -14.23233 -14.15988 -13.93552 -13.86946 -13.71924 -13.36299 -13.19276 -12.78736 -12.66510 -12.55501 -12.26207 -12.05110 -11.63719 -11.52115 -11.14925 -11.03201 -10.54719 -10.46118 -10.44999 -10.43192 -10.30954 -9.62291 -9.55363 -9.46085 -8.54828 -8.43890 -8.10157 -6.51572 -3.93749 0.08785 0.96465 1.52196 1.91217 2.28390 2.54025 2.63033 3.12013 3.22453 3.28344 3.49605 3.71939 3.93876 4.09389 4.23756 4.44508 4.48761 4.53133 4.70476 4.89951 4.92099 5.06471 5.10090 5.13525 5.16354 5.23076 5.30710 5.41569 5.47463 5.55318 5.65706 5.67754 5.77657 5.85144 5.99022 6.05694 6.21825 6.25548 6.54271 6.73113 7.21288 7.46134 7.78486 7.93506 8.46431 9.05230 9.37423 9.87026 10.65546 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.032372 B = 0.001824 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.745659 B =15351.073162 C =16195.370236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.082 3.918 3 C -0.256 4.256 4 C 0.058 3.942 5 N -0.328 5.328 6 C 0.193 3.807 7 C -0.157 4.157 8 C -0.027 4.027 9 C -0.131 4.131 10 C 0.506 3.494 11 O -0.510 6.510 12 O -0.321 6.321 13 C 0.062 3.938 14 C 0.438 3.562 15 O -0.577 6.577 16 N -0.552 5.552 17 C -0.303 4.303 18 H 0.106 0.894 19 C 0.025 3.975 20 N -0.896 5.896 21 Si 0.934 3.066 22 H -0.277 1.277 23 H -0.283 1.283 24 H -0.268 1.268 25 C -0.029 4.029 26 C -0.136 4.136 27 N -0.287 5.287 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.156 0.844 32 H 0.182 0.818 33 H 0.139 0.861 34 H 0.157 0.843 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.395 0.605 38 H 0.274 0.726 39 H 0.148 0.852 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.134 8.953 -0.027 27.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.086 4.086 3 C -0.284 4.284 4 C -0.083 4.083 5 N -0.103 5.103 6 C 0.100 3.900 7 C -0.178 4.178 8 C -0.046 4.046 9 C -0.133 4.133 10 C 0.350 3.650 11 O -0.400 6.400 12 O -0.235 6.235 13 C -0.016 4.016 14 C 0.223 3.777 15 O -0.461 6.461 16 N -0.189 5.189 17 C -0.432 4.432 18 H 0.124 0.876 19 C -0.177 4.177 20 N -0.537 5.537 21 Si 0.761 3.239 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.193 1.193 25 C -0.048 4.048 26 C -0.156 4.156 27 N -0.107 5.107 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.173 0.827 32 H 0.199 0.801 33 H 0.157 0.843 34 H 0.175 0.825 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.229 0.771 38 H 0.084 0.916 39 H 0.166 0.834 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -25.883 7.993 -0.027 27.089 hybrid contribution 0.988 0.536 0.004 1.124 sum -24.895 8.529 -0.023 26.315 Atomic orbital electron populations 1.20240 0.86054 1.03676 1.03326 1.22613 0.97360 0.90655 0.97984 1.21542 0.91412 1.00189 1.15272 1.22857 1.00231 0.84160 1.01067 1.45915 1.04261 1.04287 1.55850 1.17815 0.83651 0.90117 0.98446 1.20784 0.89620 1.01034 1.06313 1.21474 0.99750 0.91823 0.91519 1.19204 0.91252 0.93245 1.09626 1.21054 0.83891 0.86918 0.73101 1.90830 1.87337 1.15586 1.46238 1.86579 1.13775 1.40131 1.83051 1.22782 0.83881 0.91254 1.03673 1.19294 0.83959 0.88409 0.86030 1.90554 1.86734 1.13456 1.55384 1.41698 1.03988 1.09482 1.63712 1.19728 0.81949 0.93282 1.48279 0.87591 1.25315 0.99765 0.95790 0.96844 1.69612 1.27829 1.06686 1.49542 0.85796 0.80338 0.79299 0.78495 1.20259 1.20806 1.19289 1.21167 0.89617 1.01109 0.92858 1.20772 1.00231 0.90565 1.04063 1.77396 0.85505 1.22775 1.25019 0.90136 0.90622 0.90077 0.82670 0.80114 0.84301 0.82521 0.89386 0.89378 0.77131 0.91605 0.83422 0.83661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.44 36.01 0.38 0.00 16 2 C 0.08 0.71 7.21 -82.37 -0.59 0.12 16 3 C -0.26 -1.92 10.73 -39.99 -0.43 -2.35 16 4 C 0.06 0.46 10.81 -16.83 -0.18 0.28 16 5 N -0.33 -3.46 3.81 -10.55 -0.04 -3.50 16 6 C 0.19 2.06 6.69 -83.61 -0.56 1.50 16 7 C -0.16 -1.51 9.44 -39.47 -0.37 -1.88 16 8 C -0.03 -0.31 9.61 -39.21 -0.38 -0.68 16 9 C -0.13 -1.71 5.87 -104.96 -0.62 -2.33 16 10 C 0.51 8.15 7.89 34.52 0.27 8.43 16 11 O -0.51 -8.97 16.13 -19.26 -0.31 -9.28 16 12 O -0.32 -5.87 9.00 -47.28 -0.43 -6.30 16 13 C 0.06 1.16 5.95 36.00 0.21 1.37 16 14 C 0.44 10.40 7.86 -10.99 -0.09 10.32 16 15 O -0.58 -15.68 16.08 -14.12 -0.23 -15.90 16 16 N -0.55 -13.79 5.29 -10.96 -0.06 -13.85 16 17 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 18 H 0.11 3.01 7.16 -52.49 -0.38 2.64 16 19 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 20 N -0.90 -23.86 13.05 55.50 0.72 -23.14 16 21 Si 0.93 20.52 29.55 -169.99 -5.02 15.50 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 25 C -0.03 -0.33 9.58 -39.21 -0.38 -0.70 16 26 C -0.14 -1.46 9.64 -39.47 -0.38 -1.84 16 27 N -0.29 -3.21 11.85 33.69 0.40 -2.81 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.16 0.74 8.06 -52.48 -0.42 0.32 16 32 H 0.18 0.86 7.04 -52.49 -0.37 0.49 16 33 H 0.14 0.95 6.72 -52.48 -0.35 0.60 16 34 H 0.16 1.83 7.60 -52.48 -0.40 1.43 16 35 H 0.09 1.51 8.14 -51.92 -0.42 1.09 16 36 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.40 9.37 7.90 -40.82 -0.32 9.05 16 38 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 39 H 0.15 1.54 7.64 -52.48 -0.40 1.14 16 40 H 0.15 1.46 7.68 -52.48 -0.40 1.05 16 LS Contribution 361.80 15.07 5.45 5.45 Total: -1.00 -33.92 361.80 -7.15 -41.08 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -4.29 Total: 8.38 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -3.35 Total: 4.37 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 1.03 Total: -43.30 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -0.96 Total: -31.48 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.92 -7.15 -41.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731242550.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.991 kcal (2) G-P(sol) polarization free energy of solvation -33.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds