Wall clock time and date at job start Tue Mar 31 2020 06:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30462 * 125.96963 * 2 1 4 4 N 1.39922 * 108.93624 * 180.13757 * 3 2 1 5 5 C 1.40151 * 125.76060 * 179.87088 * 4 3 2 6 6 C 1.38845 * 120.06715 * 359.69424 * 5 4 3 7 7 C 1.38125 * 119.92894 * 179.97438 * 6 5 4 8 8 C 1.38273 * 120.06983 * 0.02562 * 7 6 5 9 9 C 1.38279 * 120.13641 * 0.02562 * 8 7 6 10 10 C 1.38118 * 120.06751 * 359.97438 * 9 8 7 11 11 C 1.34506 * 108.48200 * 359.60980 * 4 3 2 12 12 C 1.38155 * 107.36700 * 0.22703 * 11 4 3 13 13 C 1.47262 * 126.42360 * 180.02562 * 12 11 4 14 14 O 1.21530 * 120.00167 * 179.97438 * 13 12 11 15 15 O 1.34760 * 119.99641 * 359.97438 * 13 12 11 16 16 C 1.45203 * 116.99608 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.46867 * 179.97438 * 16 15 13 18 18 O 1.21294 * 120.00559 * 0.02562 * 17 16 15 19 19 N 1.34782 * 119.99774 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99576 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00408 * 0.02562 * 20 19 17 22 22 C 1.38959 * 119.99626 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99868 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99841 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46936 * 59.99891 * 24 22 20 26 26 H 1.48503 * 109.47053 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.46962 * 299.99704 * 24 22 20 28 28 H 1.09002 * 109.47476 * 270.28702 * 1 2 3 29 29 H 1.09002 * 109.47443 * 30.28394 * 1 2 3 30 30 H 1.08999 * 109.47416 * 150.29057 * 1 2 3 31 31 H 1.07994 * 120.03742 * 0.24951 * 6 5 4 32 32 H 1.08000 * 119.96142 * 179.97438 * 7 6 5 33 33 H 1.07998 * 119.93190 * 179.97438 * 8 7 6 34 34 H 1.08007 * 119.96887 * 179.97438 * 9 8 7 35 35 H 1.08004 * 120.03103 * 179.97438 * 10 9 8 36 36 H 1.08000 * 126.31880 * 180.20499 * 11 4 3 37 37 H 1.09001 * 109.47438 * 300.00163 * 16 15 13 38 38 H 1.09001 * 109.46932 * 60.00365 * 16 15 13 39 39 H 0.96999 * 120.00360 * 0.02562 * 19 17 16 40 40 H 0.97001 * 119.99510 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2732 1.0559 0.0000 4 7 3.6111 0.6460 -0.0032 5 6 4.7273 1.4935 -0.0067 6 6 4.5548 2.8711 -0.0137 7 6 5.6569 3.7037 -0.0166 8 6 6.9310 3.1665 -0.0132 9 6 7.1061 1.7949 -0.0073 10 6 6.0080 0.9571 -0.0043 11 6 3.6451 -0.6986 0.0035 12 6 2.3374 -1.1442 0.0057 13 6 1.8919 -2.5478 0.0133 14 8 0.7050 -2.8087 0.0150 15 8 2.8006 -3.5430 0.0183 16 6 2.2895 -4.9021 0.0262 17 6 3.4427 -5.8723 0.0303 18 8 4.5830 -5.4591 0.0274 19 7 3.2068 -7.1993 0.0383 20 6 4.2559 -8.0819 0.0426 21 1 5.2712 -7.7140 0.0400 22 6 4.0128 -9.4501 0.0502 23 7 2.7773 -9.8978 0.0539 24 14 5.4421 -10.6527 0.0568 25 1 6.2717 -10.4289 1.2679 26 1 4.9195 -12.0427 0.0652 27 1 6.2713 -10.4425 -1.1570 28 1 -0.3634 0.0051 1.0276 29 1 -0.3634 0.8874 -0.5182 30 1 -0.3634 -0.8926 -0.5093 31 1 3.5599 3.2913 -0.0124 32 1 5.5233 4.7754 -0.0225 33 1 7.7912 3.8195 -0.0159 34 1 8.1025 1.3782 -0.0050 35 1 6.1455 -0.1142 -0.0001 36 1 4.5312 -1.3161 0.0063 37 1 1.6812 -5.0564 0.9174 38 1 1.6802 -5.0663 -0.8626 39 1 2.2949 -7.5299 0.0410 40 1 2.6076 -10.8528 0.0597 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731243336.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:04 Heat of formation + Delta-G solvation = -13.976083 kcal Electronic energy + Delta-G solvation = -26088.713604 eV Core-core repulsion = 22063.588257 eV Total energy + Delta-G solvation = -4025.125347 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 4.19 seconds Orbital eigenvalues (eV) -42.02864 -39.97644 -39.26854 -38.05420 -36.00464 -34.38786 -33.99365 -31.77159 -31.38535 -31.11038 -30.43500 -28.38422 -27.69108 -24.92410 -24.16999 -23.04567 -22.05089 -20.91084 -19.73937 -19.52572 -18.59958 -18.04506 -17.29295 -16.63219 -16.37007 -16.05197 -15.64495 -15.51976 -15.33258 -14.82377 -14.47307 -14.27919 -13.97020 -13.93551 -13.89240 -13.54506 -13.18141 -12.96637 -12.72925 -12.34426 -12.24747 -12.07808 -11.93605 -11.65147 -11.61879 -11.13477 -11.11397 -10.49340 -10.44103 -10.35988 -10.32805 -10.25098 -9.59457 -9.47243 -9.44148 -8.51771 -8.45847 -8.08103 -6.49691 -3.91758 0.34275 0.88453 1.49539 1.86100 1.90756 2.82142 3.14066 3.16106 3.22658 3.27403 3.35928 3.74842 3.92579 4.12934 4.33689 4.44821 4.49440 4.67031 4.75953 4.83345 4.91317 5.06385 5.14425 5.15756 5.25310 5.29180 5.48855 5.52043 5.58116 5.65868 5.73469 5.74485 5.89427 5.91282 6.03998 6.07035 6.25846 6.26958 6.68393 6.72289 7.24021 7.47571 7.90131 8.01760 8.48974 9.07090 9.39811 9.89670 10.67440 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014878 B = 0.002413 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.458835 B =11600.992875 C =13462.004048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.147 3.853 3 N -0.297 5.297 4 N -0.311 5.311 5 C 0.152 3.848 6 C -0.115 4.115 7 C -0.099 4.099 8 C -0.126 4.126 9 C -0.092 4.092 10 C -0.136 4.136 11 C 0.135 3.865 12 C -0.264 4.264 13 C 0.540 3.460 14 O -0.514 6.514 15 O -0.326 6.326 16 C 0.063 3.937 17 C 0.439 3.561 18 O -0.578 6.578 19 N -0.552 5.552 20 C -0.303 4.303 21 H 0.105 0.895 22 C 0.025 3.975 23 N -0.897 5.897 24 Si 0.935 3.065 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.272 1.272 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.139 0.861 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.200 0.800 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.395 0.605 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.528 24.301 -0.140 24.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.022 4.022 3 N -0.116 5.116 4 N -0.081 5.081 5 C 0.060 3.940 6 C -0.134 4.134 7 C -0.117 4.117 8 C -0.145 4.145 9 C -0.110 4.110 10 C -0.156 4.156 11 C -0.013 4.013 12 C -0.276 4.276 13 C 0.385 3.615 14 O -0.404 6.404 15 O -0.240 6.240 16 C -0.014 4.014 17 C 0.224 3.776 18 O -0.463 6.463 19 N -0.190 5.190 20 C -0.432 4.432 21 H 0.123 0.877 22 C -0.178 4.178 23 N -0.537 5.537 24 Si 0.761 3.239 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.198 1.198 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.117 0.883 31 H 0.157 0.843 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.217 0.783 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.229 0.771 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.969 25.569 -0.143 25.645 hybrid contribution 0.017 -1.930 0.028 1.930 sum 1.986 23.639 -0.115 23.722 Atomic orbital electron populations 1.20430 0.84891 1.04497 1.04013 1.22637 0.97529 0.88139 0.93854 1.77236 0.84959 1.22232 1.27210 1.45553 1.04944 1.04172 1.53468 1.17622 0.83558 0.89813 1.02967 1.20933 1.00681 0.90666 1.01137 1.21092 0.91838 1.00024 0.98771 1.21294 0.97509 0.95330 1.00363 1.21038 0.98475 0.93260 0.98248 1.20999 0.90123 1.01339 1.03147 1.23492 1.00015 0.84074 0.93716 1.19387 0.92353 0.91552 1.24321 1.19901 0.84012 0.84925 0.72681 1.90793 1.17602 1.84643 1.47362 1.86575 1.38478 1.15477 1.83516 1.22733 0.96877 0.78204 1.03617 1.19331 0.89196 0.83214 0.85871 1.90543 1.22498 1.77810 1.55406 1.41700 1.10163 1.03318 1.63789 1.19666 0.89048 0.86154 1.48325 0.87697 1.25315 0.97769 0.97779 0.96903 1.69608 1.18933 1.15632 1.49550 0.85861 0.80336 0.78534 0.79163 1.19775 1.20873 1.19769 0.89671 0.90573 0.88292 0.84325 0.84976 0.85278 0.84621 0.84541 0.78322 0.89440 0.89449 0.77115 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 9.92 36.00 0.36 -0.49 16 2 C 0.15 1.96 7.27 -81.98 -0.60 1.37 16 3 N -0.30 -3.97 11.77 33.91 0.40 -3.57 16 4 N -0.31 -3.91 3.77 -10.19 -0.04 -3.95 16 5 C 0.15 1.63 6.68 -83.60 -0.56 1.07 16 6 C -0.11 -1.06 9.65 -39.40 -0.38 -1.44 16 7 C -0.10 -0.69 10.04 -39.61 -0.40 -1.09 16 8 C -0.13 -0.81 10.04 -39.55 -0.40 -1.21 16 9 C -0.09 -0.65 10.04 -39.61 -0.40 -1.05 16 10 C -0.14 -1.22 9.45 -39.40 -0.37 -1.59 16 11 C 0.13 1.74 10.64 -16.41 -0.17 1.56 16 12 C -0.26 -3.86 6.13 -105.06 -0.64 -4.51 16 13 C 0.54 9.07 7.95 34.40 0.27 9.34 16 14 O -0.51 -9.05 14.71 -19.29 -0.28 -9.33 16 15 O -0.33 -6.10 9.58 -47.34 -0.45 -6.55 16 16 C 0.06 1.20 5.95 36.01 0.21 1.42 16 17 C 0.44 10.47 7.86 -10.98 -0.09 10.38 16 18 O -0.58 -15.75 16.08 -14.11 -0.23 -15.97 16 19 N -0.55 -13.87 5.29 -10.96 -0.06 -13.93 16 20 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 21 H 0.11 2.98 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.65 5.50 -17.46 -0.10 0.56 16 23 N -0.90 -23.95 13.05 55.50 0.72 -23.22 16 24 Si 0.93 20.58 29.55 -169.99 -5.02 15.56 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 27 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.10 1.15 6.55 -51.93 -0.34 0.81 16 31 H 0.14 1.29 7.68 -52.49 -0.40 0.89 16 32 H 0.13 0.61 8.06 -52.49 -0.42 0.18 16 33 H 0.13 0.52 8.06 -52.49 -0.42 0.10 16 34 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 35 H 0.14 1.09 6.71 -52.48 -0.35 0.74 16 36 H 0.20 2.18 7.01 -52.49 -0.37 1.82 16 37 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.40 9.41 7.90 -40.82 -0.32 9.09 16 40 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 359.97 15.07 5.42 5.42 Total: -1.00 -33.38 359.97 -7.19 -40.57 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -4.26 Total: 9.10 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -3.40 Total: 5.88 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 1.03 Total: -44.68 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.96 Total: -31.86 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.38 -7.19 -40.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731243336.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.593 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.19 seconds