Wall clock time and date at job start Tue Mar 31 2020 05:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86805 * 119.99582 * 2 1 4 4 H 1.48497 * 109.47208 * 269.99878 * 3 2 1 5 5 H 1.48495 * 109.46914 * 30.00632 * 3 2 1 6 6 H 1.48500 * 109.46598 * 150.00122 * 3 2 1 7 7 C 1.38949 * 120.00498 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99856 * 0.02562 * 7 2 1 9 9 N 1.37088 * 120.00230 * 179.97438 * 7 2 1 10 10 C 1.34779 * 120.00081 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99987 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00033 * 180.02562 * 10 9 7 13 13 O 1.45206 * 109.47021 * 180.02562 * 12 10 9 14 14 C 1.34232 * 116.99878 * 179.97438 * 13 12 10 15 15 O 1.20825 * 120.00049 * 0.02562 * 14 13 12 16 16 C 1.50695 * 119.99727 * 180.02562 * 14 13 12 17 17 H 1.09001 * 109.47646 * 60.00176 * 16 14 13 18 18 C 1.50703 * 109.46852 * 180.02562 * 16 14 13 19 19 C 1.38234 * 120.00380 * 59.72529 * 18 16 14 20 20 C 1.38235 * 120.00293 * 179.78648 * 19 18 16 21 21 C 1.38233 * 119.99540 * 0.44404 * 20 19 18 22 22 C 1.38231 * 120.00396 * 359.80801 * 21 20 19 23 23 C 1.38234 * 119.99939 * 239.99676 * 18 16 14 24 24 N 1.46503 * 109.47124 * 299.99913 * 16 14 13 25 25 C 1.34951 * 126.03790 * 324.71775 * 24 16 14 26 26 C 1.35311 * 107.74399 * 179.83937 * 25 24 16 27 27 C 1.39870 * 107.92192 * 0.42495 * 26 25 24 28 28 N 1.30833 * 108.20355 * 359.73806 * 27 26 25 29 29 H 0.97002 * 120.00283 * 359.97438 * 1 2 3 30 30 H 0.97004 * 120.00446 * 0.02562 * 9 7 2 31 31 H 1.09004 * 109.47103 * 60.00241 * 12 10 9 32 32 H 1.09000 * 109.47247 * 300.00119 * 12 10 9 33 33 H 1.08001 * 119.99636 * 359.97438 * 19 18 16 34 34 H 1.07996 * 120.00440 * 180.27159 * 20 19 18 35 35 H 1.08000 * 119.99521 * 179.83375 * 21 20 19 36 36 H 1.08005 * 120.00387 * 179.97438 * 22 21 20 37 37 H 1.08010 * 120.00017 * 359.97438 * 23 18 16 38 38 H 1.08003 * 126.12490 * 359.97438 * 25 24 16 39 39 H 1.08008 * 126.03738 * 180.16249 * 26 25 24 40 40 H 1.08004 * 125.89591 * 179.71425 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4454 2.6526 0.7002 6 1 3.5455 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 1.4690 -2.1386 -0.0014 9 7 3.3798 -1.2032 -0.0011 10 6 4.0538 -2.3704 -0.0011 11 8 3.4474 -3.4209 -0.0011 12 6 5.5608 -2.3703 -0.0011 13 8 6.0448 -3.7393 -0.0017 14 6 7.3756 -3.9151 -0.0023 15 8 8.1116 -2.9569 -0.0019 16 6 7.9516 -5.3076 -0.0035 17 1 7.6154 -5.8392 -0.8938 18 6 9.4566 -5.2287 -0.0034 19 6 10.1152 -4.5907 1.0311 20 6 11.4958 -4.5221 1.0334 21 6 12.2174 -5.0836 -0.0034 22 6 11.5586 -5.7170 -1.0405 23 6 10.1782 -5.7893 -1.0406 24 7 7.5005 -6.0237 1.1923 25 6 7.3025 -5.4843 2.4133 26 6 6.8854 -6.4725 3.2381 27 6 6.8359 -7.6585 2.4982 28 7 7.2045 -7.3907 1.2717 29 1 -0.4851 0.8400 0.0004 30 1 3.8649 -0.3632 -0.0007 31 1 5.9241 -1.8565 0.8890 32 1 5.9241 -1.8564 -0.8910 33 1 9.5512 -4.1485 1.8390 34 1 12.0106 -4.0276 1.8438 35 1 13.2960 -5.0276 -0.0029 36 1 12.1224 -6.1552 -1.8508 37 1 9.6634 -6.2843 -1.8509 38 1 7.4485 -4.4487 2.6832 39 1 6.6388 -6.3655 4.2842 40 1 6.5443 -8.6279 2.8744 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731244183.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:07 Heat of formation + Delta-G solvation = 8.161844 kcal Electronic energy + Delta-G solvation = -27135.908158 eV Core-core repulsion = 23111.742784 eV Total energy + Delta-G solvation = -4024.165374 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.71792 -40.49386 -39.39644 -38.38391 -36.50902 -34.58394 -34.11674 -31.85062 -31.33379 -30.81385 -30.08145 -29.04228 -27.20261 -24.59149 -23.09628 -22.60233 -22.04868 -21.07410 -20.29683 -19.72512 -18.68590 -18.35008 -17.40930 -17.32641 -16.62566 -16.15473 -15.75634 -15.65612 -15.08304 -14.80468 -14.65571 -14.50941 -14.13289 -13.78979 -13.71196 -13.43805 -13.11707 -12.95799 -12.87837 -12.77403 -12.51794 -12.32323 -12.24070 -11.67017 -11.40827 -11.31075 -10.96853 -10.73476 -10.71885 -10.68653 -10.08970 -9.72353 -9.59602 -9.24973 -9.18838 -8.74141 -8.70357 -8.33837 -6.42897 -3.96153 0.80370 1.10742 1.48886 1.77960 2.22448 2.59160 2.82305 2.94627 2.99642 3.08702 3.48647 3.51580 3.99106 4.01475 4.11671 4.36080 4.61533 4.65845 4.67705 4.73068 4.80626 4.92609 5.05194 5.14265 5.17729 5.25488 5.41965 5.44082 5.54534 5.59095 5.65524 5.70228 5.94195 6.08325 6.13779 6.16726 6.18583 6.53969 6.62117 6.76579 7.34624 7.46730 7.57942 7.96015 8.42968 8.79553 9.25174 9.60002 10.69266 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.015985 B = 0.002980 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.267885 B = 9394.526762 C =10461.825680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.046 3.954 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.268 1.268 7 C -0.309 4.309 8 H 0.123 0.877 9 N -0.577 5.577 10 C 0.446 3.554 11 O -0.554 6.554 12 C 0.056 3.944 13 O -0.311 6.311 14 C 0.453 3.547 15 O -0.482 6.482 16 C 0.223 3.777 17 H 0.143 0.857 18 C -0.103 4.103 19 C -0.071 4.071 20 C -0.123 4.123 21 C -0.105 4.105 22 C -0.124 4.124 23 C -0.088 4.088 24 N -0.363 5.363 25 C 0.060 3.940 26 C -0.262 4.262 27 C 0.051 3.949 28 N -0.283 5.283 29 H 0.276 0.724 30 H 0.373 0.627 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.119 0.881 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.166 0.834 39 H 0.151 0.849 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.055 -8.671 2.641 25.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.158 4.158 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.194 1.194 7 C -0.437 4.437 8 H 0.140 0.860 9 N -0.218 5.218 10 C 0.230 3.770 11 O -0.435 6.435 12 C -0.021 4.021 13 O -0.225 6.225 14 C 0.292 3.708 15 O -0.368 6.368 16 C 0.119 3.881 17 H 0.161 0.839 18 C -0.104 4.104 19 C -0.090 4.090 20 C -0.141 4.141 21 C -0.123 4.123 22 C -0.142 4.142 23 C -0.106 4.106 24 N -0.147 5.147 25 C -0.085 4.085 26 C -0.291 4.291 27 C -0.136 4.136 28 N -0.103 5.103 29 H 0.087 0.913 30 H 0.206 0.794 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.137 0.863 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.183 0.817 39 H 0.168 0.832 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 23.827 -9.324 1.351 25.622 hybrid contribution 0.355 2.056 0.837 2.248 sum 24.182 -7.268 2.188 25.345 Atomic orbital electron populations 1.69610 1.05659 1.27818 1.48134 1.25039 0.95519 0.98060 0.97213 0.86680 0.79833 0.83877 0.79111 1.19376 1.19883 1.19393 1.19423 0.78589 0.96917 1.48773 0.85982 1.42018 1.07659 1.05607 1.66467 1.19106 0.86716 0.85247 0.85890 1.90634 1.68860 1.30639 1.53372 1.22883 0.95650 0.79785 1.03807 1.86622 1.21931 1.31823 1.82106 1.23259 0.81916 0.91432 0.74184 1.90725 1.60629 1.41591 1.43813 1.19489 0.91104 0.87415 0.90043 0.83908 1.19365 0.91606 1.02022 0.97417 1.20920 0.94750 0.96028 0.97263 1.21115 0.93671 1.00210 0.99059 1.21252 1.00079 0.96980 0.93996 1.21104 0.93987 1.00080 0.99017 1.20993 0.94423 0.97990 0.97243 1.48269 1.52739 1.06792 1.06913 1.22475 1.00700 0.99967 0.85339 1.21479 1.13706 0.92260 1.01702 1.23927 0.98979 0.99812 0.90833 1.77389 1.21445 0.90845 1.20634 0.91325 0.79403 0.89197 0.89067 0.86338 0.85637 0.85747 0.85472 0.85352 0.81652 0.83169 0.79648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.91 13.96 55.50 0.77 -24.14 16 2 C 0.05 1.23 5.50 -17.47 -0.10 1.13 16 3 Si 0.88 18.76 27.74 -169.99 -4.71 14.05 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 6 H -0.27 -5.20 6.52 56.52 0.37 -4.83 16 7 C -0.31 -8.56 10.16 -14.94 -0.15 -8.72 16 8 H 0.12 3.88 7.39 -52.48 -0.39 3.49 16 9 N -0.58 -13.49 5.09 -10.96 -0.06 -13.54 16 10 C 0.45 10.17 7.86 -10.99 -0.09 10.08 16 11 O -0.55 -15.22 16.08 -14.12 -0.23 -15.44 16 12 C 0.06 0.97 5.94 36.01 0.21 1.18 16 13 O -0.31 -5.46 9.76 -45.91 -0.45 -5.91 16 14 C 0.45 6.62 6.36 36.00 0.23 6.84 16 15 O -0.48 -7.31 14.84 -18.75 -0.28 -7.59 16 16 C 0.22 2.83 3.46 -70.23 -0.24 2.59 16 17 H 0.14 1.63 7.88 -51.93 -0.41 1.22 16 18 C -0.10 -1.17 4.60 -104.62 -0.48 -1.65 16 19 C -0.07 -0.78 8.04 -39.58 -0.32 -1.10 16 20 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 21 C -0.10 -0.86 10.05 -39.59 -0.40 -1.26 16 22 C -0.12 -1.04 10.05 -39.59 -0.40 -1.44 16 23 C -0.09 -0.85 9.67 -39.58 -0.38 -1.23 16 24 N -0.36 -4.95 3.45 -57.13 -0.20 -5.14 16 25 C 0.06 0.76 9.55 -17.22 -0.16 0.60 16 26 C -0.26 -3.08 10.80 -40.01 -0.43 -3.51 16 27 C 0.05 0.62 12.03 -17.37 -0.21 0.41 16 28 N -0.28 -4.01 12.58 30.62 0.39 -3.63 16 29 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.37 7.52 5.76 -40.82 -0.24 7.29 16 31 H 0.09 1.33 8.13 -51.93 -0.42 0.91 16 32 H 0.09 1.36 8.13 -51.93 -0.42 0.94 16 33 H 0.12 1.28 6.93 -52.49 -0.36 0.92 16 34 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 36 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 37 H 0.13 0.99 7.95 -52.48 -0.42 0.58 16 38 H 0.17 1.83 7.63 -52.48 -0.40 1.43 16 39 H 0.15 1.40 8.06 -52.48 -0.42 0.97 16 40 H 0.19 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 356.74 15.07 5.38 5.38 Total: -1.00 -35.16 356.74 -7.04 -42.21 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -4.34 Total: 11.37 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -3.32 Total: 2.40 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: 0.91 Total: -46.45 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -0.95 Total: -28.95 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -4.71 Total: 14.05 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.16 -7.04 -42.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731244183.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.367 kcal (2) G-P(sol) polarization free energy of solvation -35.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds