Wall clock time and date at job start Tue Mar 31 2020 04:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46825 * 2 1 4 4 O 1.42902 * 109.47212 * 120.00098 * 2 1 3 5 5 C 1.35948 * 116.99803 * 275.12615 * 4 2 1 6 6 C 1.38718 * 120.02187 * 5.46201 * 5 4 2 7 7 C 1.38169 * 120.01665 * 180.02562 * 6 5 4 8 8 C 1.38411 * 120.04907 * 359.76271 * 7 6 5 9 9 F 1.35100 * 119.97857 * 180.28426 * 8 7 6 10 10 C 1.38650 * 120.04205 * 0.51228 * 8 7 6 11 11 F 1.35091 * 120.00641 * 179.74165 * 10 8 7 12 12 C 1.38361 * 119.98155 * 359.46829 * 10 8 7 13 13 C 1.50701 * 109.47211 * 240.00325 * 2 1 3 14 14 O 1.20832 * 119.99736 * 245.00184 * 13 2 1 15 15 O 1.34224 * 120.00303 * 64.99647 * 13 2 1 16 16 C 1.45200 * 117.00194 * 180.02562 * 15 13 2 17 17 C 1.50703 * 109.47061 * 179.97438 * 16 15 13 18 18 O 1.21297 * 120.00119 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00121 * 179.97438 * 17 16 15 20 20 C 1.37088 * 120.00239 * 180.02562 * 19 17 16 21 21 H 1.07999 * 120.00087 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00408 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99816 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00489 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.46998 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47338 * 119.99800 * 24 22 20 27 27 H 1.48504 * 109.46928 * 239.99915 * 24 22 20 28 28 H 1.09005 * 109.46825 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46990 * 299.99569 * 1 2 3 30 30 H 1.09000 * 109.47167 * 60.00086 * 1 2 3 31 31 H 1.08010 * 119.99316 * 0.02562 * 6 5 4 32 32 H 1.08001 * 119.97280 * 180.02562 * 7 6 5 33 33 H 1.08006 * 120.02211 * 180.29369 * 12 10 8 34 34 H 1.09002 * 109.46620 * 299.99485 * 16 15 13 35 35 H 1.08994 * 109.47432 * 59.99972 * 16 15 13 36 36 H 0.97008 * 119.99662 * 0.02562 * 19 17 16 37 37 H 0.97000 * 120.00220 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.1100 0.0622 2.3052 6 6 1.6547 1.3723 2.3286 7 6 1.7607 2.1203 3.4855 8 6 2.3165 1.5618 4.6234 9 9 2.4141 2.2926 5.7555 10 6 2.7774 0.2544 4.6009 11 9 3.3246 -0.2883 5.7105 12 6 2.6718 -0.4962 3.4433 13 6 2.0323 -0.7103 -1.2305 14 8 2.6506 -1.7428 -1.1219 15 8 1.7929 -0.1962 -2.4470 16 6 2.3060 -0.9343 -3.5873 17 6 1.9426 -0.2112 -4.8586 18 8 1.3134 0.8246 -4.8085 19 7 2.3176 -0.7148 -6.0511 20 6 1.9875 -0.0568 -7.2076 21 1 1.4266 0.8651 -7.1630 22 6 2.3736 -0.5763 -8.4371 23 7 3.0557 -1.6982 -8.4914 24 14 1.9244 0.3208 -10.0128 25 1 1.1612 1.5508 -9.6818 26 1 3.1637 0.6883 -10.7437 27 1 1.0907 -0.5641 -10.8656 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.2173 1.8079 1.4423 32 1 1.4056 3.1401 3.5031 33 1 3.0263 -1.5162 3.4264 34 1 3.3905 -1.0130 -3.5109 35 1 1.8693 -1.9329 -3.6002 36 1 2.8211 -1.5431 -6.0912 37 1 3.3249 -2.0612 -9.3497 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731244738.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:08 Heat of formation + Delta-G solvation = -213.950284 kcal Electronic energy + Delta-G solvation = -26483.272012 eV Core-core repulsion = 21862.952852 eV Total energy + Delta-G solvation = -4620.319160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.095 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -49.83869 -48.90139 -41.20861 -40.14635 -38.30009 -37.65316 -36.20116 -34.08076 -32.85742 -31.45758 -31.18324 -29.83991 -28.52382 -25.46411 -24.56730 -23.95223 -23.00999 -20.96654 -19.69467 -19.24074 -18.24153 -18.12271 -17.91072 -17.50398 -16.86280 -16.69673 -16.49521 -16.39575 -15.71456 -15.48733 -15.30992 -14.90410 -14.86912 -14.48908 -14.44556 -14.16892 -13.96302 -13.46289 -13.23506 -13.19594 -12.81291 -12.51916 -12.36561 -12.22473 -11.99248 -11.68135 -11.56787 -11.35167 -11.20281 -10.57789 -10.47621 -10.44011 -10.34647 -9.68189 -9.58669 -8.72207 -8.61367 -8.15255 -6.56155 -3.98500 0.40064 0.52767 1.77776 2.02720 2.84397 2.94090 3.07182 3.20218 3.27154 3.43892 3.65344 3.91492 3.99606 4.08645 4.15884 4.33201 4.38576 4.46027 4.56870 4.67129 4.91289 5.08381 5.18806 5.25273 5.27869 5.35385 5.41128 5.43194 5.57473 5.58521 5.74962 5.95068 6.08184 6.39406 6.66561 7.42141 7.62232 7.87536 8.40724 9.00523 9.31933 9.80985 10.60914 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.035326 B = 0.001880 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.430343 B =14891.600033 C =15280.007975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.095 3.905 3 H 0.117 0.883 4 O -0.281 6.281 5 C 0.157 3.843 6 C -0.193 4.193 7 C -0.080 4.080 8 C 0.028 3.972 9 F -0.130 7.130 10 C 0.111 3.889 11 F -0.122 7.122 12 C -0.159 4.159 13 C 0.462 3.538 14 O -0.488 6.488 15 O -0.318 6.318 16 C 0.062 3.938 17 C 0.437 3.563 18 O -0.577 6.577 19 N -0.550 5.550 20 C -0.303 4.303 21 H 0.107 0.893 22 C 0.025 3.975 23 N -0.895 5.895 24 Si 0.934 3.066 25 H -0.266 1.266 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.157 0.843 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.395 0.605 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.434 3.470 22.769 23.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.038 3.962 3 H 0.134 0.866 4 O -0.193 6.193 5 C 0.111 3.889 6 C -0.212 4.212 7 C -0.099 4.099 8 C 0.008 3.992 9 F -0.109 7.109 10 C 0.090 3.910 11 F -0.100 7.100 12 C -0.178 4.178 13 C 0.302 3.698 14 O -0.375 6.375 15 O -0.233 6.233 16 C -0.016 4.016 17 C 0.222 3.778 18 O -0.461 6.461 19 N -0.188 5.188 20 C -0.432 4.432 21 H 0.125 0.875 22 C -0.178 4.178 23 N -0.536 5.536 24 Si 0.761 3.239 25 H -0.191 1.191 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.096 0.904 29 H 0.099 0.901 30 H 0.117 0.883 31 H 0.169 0.831 32 H 0.170 0.830 33 H 0.175 0.825 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.229 0.771 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.521 3.537 22.664 23.077 hybrid contribution 0.387 -0.197 -0.521 0.678 sum -2.134 3.340 22.143 22.495 Atomic orbital electron populations 1.22379 0.90866 1.05085 1.05157 1.21717 0.96645 0.96715 0.81145 0.86555 1.86183 1.80779 1.36854 1.15518 1.18582 0.94083 0.89931 0.86330 1.21345 1.05943 0.93736 1.00175 1.20877 0.97541 1.01153 0.90288 1.17550 1.07426 0.89420 0.84852 1.91531 1.94579 1.76413 1.48342 1.17210 0.98995 0.90741 0.84014 1.91558 1.82930 1.85669 1.49865 1.20183 1.05335 1.02584 0.89693 1.22845 0.77717 0.84019 0.85175 1.90713 1.36716 1.22895 1.87143 1.86491 1.71456 1.51809 1.13563 1.22846 1.00048 0.95418 0.83248 1.19248 0.86781 0.87963 0.83820 1.90564 1.44130 1.24922 1.86469 1.41709 1.48880 1.24112 1.04055 1.19774 1.33578 1.07599 0.82247 0.87493 1.25336 0.96443 0.96278 0.99723 1.69620 1.37374 1.19396 1.27182 0.85730 0.78317 0.79354 0.80537 1.19060 1.20581 1.20589 0.90354 0.90131 0.88340 0.83054 0.82997 0.82495 0.89257 0.89233 0.77110 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 9.15 37.16 0.34 -1.10 16 2 C 0.10 0.97 2.75 -27.88 -0.08 0.89 16 3 H 0.12 0.91 6.32 -51.93 -0.33 0.58 16 4 O -0.28 -3.06 9.34 -39.48 -0.37 -3.43 16 5 C 0.16 1.40 6.60 -39.25 -0.26 1.15 16 6 C -0.19 -1.33 8.24 -39.43 -0.32 -1.66 16 7 C -0.08 -0.53 10.02 -39.54 -0.40 -0.93 16 8 C 0.03 0.24 7.30 -39.37 -0.29 -0.04 16 9 F -0.13 -1.27 17.18 2.25 0.04 -1.23 16 10 C 0.11 1.02 7.30 -39.38 -0.29 0.74 16 11 F -0.12 -1.24 17.18 2.25 0.04 -1.20 16 12 C -0.16 -1.40 9.96 -39.38 -0.39 -1.79 16 13 C 0.46 6.69 7.29 36.01 0.26 6.95 16 14 O -0.49 -8.31 16.26 -25.47 -0.41 -8.73 16 15 O -0.32 -5.33 9.75 -45.89 -0.45 -5.78 16 16 C 0.06 1.10 5.94 36.01 0.21 1.31 16 17 C 0.44 10.01 7.86 -10.98 -0.09 9.92 16 18 O -0.58 -15.21 16.08 -14.12 -0.23 -15.44 16 19 N -0.55 -13.40 5.29 -10.96 -0.06 -13.46 16 20 C -0.30 -8.10 9.68 -14.94 -0.14 -8.24 16 21 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 23 N -0.90 -23.46 13.05 55.50 0.72 -22.73 16 24 Si 0.93 20.16 29.55 -169.99 -5.02 15.14 16 25 H -0.27 -5.74 7.11 56.52 0.40 -5.33 16 26 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 27 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.47 6.90 -51.93 -0.36 0.11 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.15 0.74 5.42 -52.48 -0.28 0.46 16 32 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.16 1.25 8.06 -52.48 -0.42 0.83 16 34 H 0.09 1.45 8.13 -51.93 -0.42 1.02 16 35 H 0.09 1.44 8.13 -51.93 -0.42 1.02 16 36 H 0.40 9.13 7.90 -40.82 -0.32 8.80 16 37 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 343.24 15.07 5.17 5.17 Total: -1.00 -32.24 343.24 -5.44 -37.68 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -3.34 Total: 6.28 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -1.53 Total: 7.74 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.67 Total: -36.19 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -1.46 Total: -33.38 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.08 Total: -2.44 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.24 -5.44 -37.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731244738.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.272 kcal (2) G-P(sol) polarization free energy of solvation -32.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds