Wall clock time and date at job start Tue Mar 31 2020 04:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08995 * 109.47457 * 2 1 4 4 O 1.42904 * 109.47194 * 239.99790 * 2 1 3 5 5 C 1.35943 * 116.99736 * 84.87448 * 4 2 1 6 6 C 1.38724 * 120.02161 * 354.61719 * 5 4 2 7 7 C 1.38164 * 120.01560 * 179.72159 * 6 5 4 8 8 C 1.38410 * 120.05458 * 0.02562 * 7 6 5 9 9 F 1.35097 * 119.98609 * 179.97438 * 8 7 6 10 10 C 1.38659 * 120.03855 * 0.02562 * 8 7 6 11 11 F 1.35100 * 120.00726 * 180.02562 * 10 8 7 12 12 C 1.38352 * 119.98635 * 359.95460 * 10 8 7 13 13 C 1.50703 * 109.47076 * 120.00429 * 2 1 3 14 14 O 1.20822 * 120.00159 * 119.99863 * 13 2 1 15 15 O 1.34235 * 119.99662 * 299.99344 * 13 2 1 16 16 C 1.45201 * 117.00069 * 180.02562 * 15 13 2 17 17 C 1.50697 * 109.46818 * 180.02562 * 16 15 13 18 18 O 1.21289 * 120.00644 * 0.02562 * 17 16 15 19 19 N 1.34779 * 119.99698 * 179.97438 * 17 16 15 20 20 C 1.37094 * 120.00430 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99687 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00577 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00225 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99698 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47093 * 89.99946 * 24 22 20 26 26 H 1.48494 * 109.46900 * 209.99906 * 24 22 20 27 27 H 1.48495 * 109.47084 * 329.99727 * 24 22 20 28 28 H 1.08995 * 109.47457 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47249 * 300.00403 * 1 2 3 30 30 H 1.09004 * 109.47422 * 59.99652 * 1 2 3 31 31 H 1.08003 * 119.99494 * 359.75813 * 6 5 4 32 32 H 1.07999 * 119.97571 * 180.02562 * 7 6 5 33 33 H 1.07998 * 120.02993 * 180.02562 * 12 10 8 34 34 H 1.09002 * 109.46889 * 300.00448 * 16 15 13 35 35 H 1.09000 * 109.47166 * 60.00105 * 16 15 13 36 36 H 0.97002 * 120.00065 * 359.97438 * 19 17 16 37 37 H 0.96996 * 120.00389 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.1100 0.0621 -2.3051 6 6 1.6562 1.3729 -2.3281 7 6 1.7669 2.1224 -3.4834 8 6 2.3299 1.5666 -4.6191 9 9 2.4370 2.3006 -5.7482 10 6 2.7833 0.2564 -4.5990 11 9 3.3332 -0.2854 -5.7077 12 6 2.6736 -0.4956 -3.4428 13 6 2.0322 -0.7105 1.2304 14 8 2.7268 -1.6929 1.1195 15 8 1.7080 -0.2519 2.4496 16 6 2.2276 -0.9858 3.5897 17 6 1.7626 -0.3292 4.8639 18 8 1.0618 0.6596 4.8161 19 7 2.1245 -0.8415 6.0569 20 6 1.7020 -0.2440 7.2162 21 1 1.0787 0.6370 7.1735 22 6 2.0747 -0.7724 8.4460 23 7 1.6693 -0.1999 9.5572 24 14 3.1522 -2.2965 8.5198 25 1 4.5810 -1.8922 8.5401 26 1 2.8379 -3.0657 9.7505 27 1 2.8943 -3.1433 7.3275 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.2168 1.8077 -1.4425 32 1 1.4138 3.1429 -3.5005 33 1 3.0269 -1.5161 -3.4263 34 1 1.8641 -2.0129 3.5569 35 1 3.3171 -0.9847 3.5566 36 1 2.6840 -1.6329 6.0952 37 1 1.9298 -0.5685 10.4158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731244739.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:13 Heat of formation + Delta-G solvation = -206.367917 kcal Electronic energy + Delta-G solvation = -26541.074156 eV Core-core repulsion = 21921.083792 eV Total energy + Delta-G solvation = -4619.990364 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.095 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.86287 -48.92572 -41.26661 -40.22544 -38.47489 -37.71560 -36.30564 -34.14256 -32.90646 -31.86774 -31.22615 -29.87142 -28.73726 -25.50559 -24.47740 -23.96986 -23.02550 -21.01842 -19.74757 -19.29098 -18.71426 -18.20545 -17.95592 -17.55428 -16.95585 -16.74384 -16.52456 -16.44272 -15.73634 -15.51823 -15.33497 -15.10166 -14.92952 -14.64060 -14.48849 -14.28730 -13.77681 -13.43508 -13.24560 -13.13420 -12.87916 -12.61218 -12.46652 -12.36268 -12.27904 -12.07195 -11.60569 -11.38859 -11.31682 -10.71136 -10.68489 -10.54067 -10.10793 -9.74188 -9.61561 -8.77254 -8.73806 -8.35952 -6.45064 -3.98405 0.37225 0.49849 1.70319 1.95141 2.81490 2.87599 2.94203 2.99182 3.08456 3.40807 3.46875 3.88791 3.97340 4.00098 4.10687 4.17315 4.34079 4.39621 4.52146 4.62363 4.72686 5.04437 5.14519 5.22516 5.25493 5.26113 5.32962 5.40287 5.43702 5.54257 5.58050 5.73866 6.05100 6.26110 6.62718 7.37039 7.55835 7.93771 8.40576 8.77118 9.23160 9.57402 10.66953 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.033838 B = 0.001964 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.274331 B =14253.972281 C =14723.080601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.095 3.905 3 H 0.118 0.882 4 O -0.281 6.281 5 C 0.157 3.843 6 C -0.193 4.193 7 C -0.080 4.080 8 C 0.028 3.972 9 F -0.130 7.130 10 C 0.111 3.889 11 F -0.122 7.122 12 C -0.158 4.158 13 C 0.463 3.537 14 O -0.489 6.489 15 O -0.317 6.317 16 C 0.059 3.941 17 C 0.446 3.554 18 O -0.558 6.558 19 N -0.577 5.577 20 C -0.309 4.309 21 H 0.123 0.877 22 C 0.046 3.954 23 N -0.873 5.873 24 Si 0.879 3.121 25 H -0.268 1.268 26 H -0.274 1.274 27 H -0.268 1.268 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.157 0.843 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.373 0.627 37 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.982 0.201 -25.641 25.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.038 3.962 3 H 0.136 0.864 4 O -0.194 6.194 5 C 0.111 3.889 6 C -0.212 4.212 7 C -0.098 4.098 8 C 0.008 3.992 9 F -0.108 7.108 10 C 0.090 3.910 11 F -0.100 7.100 12 C -0.178 4.178 13 C 0.304 3.696 14 O -0.375 6.375 15 O -0.232 6.232 16 C -0.019 4.019 17 C 0.231 3.769 18 O -0.440 6.440 19 N -0.217 5.217 20 C -0.438 4.438 21 H 0.140 0.860 22 C -0.159 4.159 23 N -0.512 5.512 24 Si 0.705 3.295 25 H -0.194 1.194 26 H -0.199 1.199 27 H -0.193 1.193 28 H 0.096 0.904 29 H 0.118 0.882 30 H 0.098 0.902 31 H 0.170 0.830 32 H 0.170 0.830 33 H 0.175 0.825 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.207 0.793 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.780 0.376 -25.456 25.470 hybrid contribution 1.075 -1.220 -0.037 1.627 sum 1.855 -0.844 -25.492 25.574 Atomic orbital electron populations 1.22390 0.90803 1.05112 1.05245 1.21722 0.96724 0.96660 0.81091 0.86446 1.86173 1.80815 1.36882 1.15507 1.18576 0.94136 0.89924 0.86305 1.21342 1.05954 0.93697 1.00195 1.20880 0.97438 1.01203 0.90323 1.17553 1.07357 0.89294 0.84993 1.91531 1.94497 1.76227 1.48580 1.17214 0.99003 0.90701 0.84047 1.91561 1.82806 1.85714 1.49934 1.20179 1.05306 1.02588 0.89714 1.22869 0.78340 0.83282 0.85132 1.90709 1.34560 1.25043 1.87205 1.86502 1.68768 1.54554 1.13343 1.22844 0.99828 0.95793 0.83388 1.19110 0.86706 0.87616 0.83433 1.90605 1.40207 1.26867 1.86277 1.42031 1.46911 1.27322 1.05421 1.19417 1.30844 1.12562 0.80935 0.85954 1.25047 0.97679 0.98187 0.94948 1.69606 1.43909 1.40024 0.97624 0.86679 0.81309 0.82774 0.78747 1.19360 1.19894 1.19340 0.90372 0.88199 0.90154 0.83048 0.82970 0.82513 0.89114 0.89132 0.79341 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 9.10 37.15 0.34 -1.05 16 2 C 0.10 0.92 2.75 -27.89 -0.08 0.84 16 3 H 0.12 0.84 6.32 -51.93 -0.33 0.52 16 4 O -0.28 -2.92 9.33 -39.51 -0.37 -3.29 16 5 C 0.16 1.34 6.60 -39.24 -0.26 1.08 16 6 C -0.19 -1.27 8.24 -39.43 -0.32 -1.59 16 7 C -0.08 -0.51 10.02 -39.55 -0.40 -0.91 16 8 C 0.03 0.24 7.30 -39.36 -0.29 -0.05 16 9 F -0.13 -1.24 17.18 2.25 0.04 -1.20 16 10 C 0.11 0.99 7.30 -39.38 -0.29 0.70 16 11 F -0.12 -1.21 17.18 2.25 0.04 -1.17 16 12 C -0.16 -1.35 9.96 -39.38 -0.39 -1.74 16 13 C 0.46 6.34 7.33 36.01 0.26 6.60 16 14 O -0.49 -7.88 16.25 -25.47 -0.41 -8.29 16 15 O -0.32 -5.02 9.66 -45.92 -0.44 -5.46 16 16 C 0.06 0.97 5.94 36.00 0.21 1.19 16 17 C 0.45 9.75 7.86 -10.99 -0.09 9.66 16 18 O -0.56 -14.46 16.08 -14.11 -0.23 -14.69 16 19 N -0.58 -13.11 5.09 -10.97 -0.06 -13.17 16 20 C -0.31 -8.37 10.16 -14.94 -0.15 -8.52 16 21 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 22 C 0.05 1.20 5.50 -17.47 -0.10 1.11 16 23 N -0.87 -24.48 13.96 55.50 0.77 -23.71 16 24 Si 0.88 18.50 27.74 -169.99 -4.71 13.79 16 25 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 H -0.27 -5.12 6.52 56.52 0.37 -4.75 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.10 0.82 8.11 -51.93 -0.42 0.39 16 30 H 0.08 0.44 6.90 -51.93 -0.36 0.08 16 31 H 0.15 0.69 5.42 -52.48 -0.28 0.41 16 32 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 33 H 0.16 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.09 1.32 8.13 -51.93 -0.42 0.90 16 35 H 0.09 1.31 8.13 -51.93 -0.42 0.89 16 36 H 0.37 7.36 5.76 -40.82 -0.24 7.13 16 37 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 339.99 15.07 5.12 5.12 Total: -1.00 -33.26 339.99 -5.09 -38.34 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -3.30 Total: 6.40 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -1.54 Total: 7.33 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.72 Total: -36.87 kcal Atomic # 8 Polarization: -30.28 SS G_CDS: -1.45 Total: -31.73 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.08 Total: -2.38 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -4.71 Total: 13.79 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.26 -5.09 -38.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731244739.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.025 kcal (2) G-P(sol) polarization free energy of solvation -33.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds