Wall clock time and date at job start Tue Mar 31 2020 04:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08995 * 109.47457 * 2 1 4 4 O 1.42904 * 109.47194 * 239.99790 * 2 1 3 5 5 C 1.35943 * 116.99736 * 84.87448 * 4 2 1 6 6 C 1.38724 * 120.02161 * 354.61719 * 5 4 2 7 7 C 1.38164 * 120.01560 * 179.72159 * 6 5 4 8 8 C 1.38410 * 120.05458 * 0.02562 * 7 6 5 9 9 F 1.35097 * 119.98609 * 179.97438 * 8 7 6 10 10 C 1.38659 * 120.03855 * 0.02562 * 8 7 6 11 11 F 1.35100 * 120.00726 * 180.02562 * 10 8 7 12 12 C 1.38352 * 119.98635 * 359.95460 * 10 8 7 13 13 C 1.50703 * 109.47076 * 120.00429 * 2 1 3 14 14 O 1.20822 * 120.00159 * 119.99863 * 13 2 1 15 15 O 1.34235 * 119.99662 * 299.99344 * 13 2 1 16 16 C 1.45201 * 117.00069 * 180.02562 * 15 13 2 17 17 C 1.50697 * 109.46818 * 180.02562 * 16 15 13 18 18 O 1.21289 * 120.00644 * 0.02562 * 17 16 15 19 19 N 1.34779 * 119.99698 * 179.97438 * 17 16 15 20 20 C 1.37094 * 120.00430 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99687 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00577 * 179.97438 * 20 19 17 23 23 N 1.31407 * 120.00225 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99698 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47093 * 89.99946 * 24 22 20 26 26 H 1.48494 * 109.46900 * 209.99906 * 24 22 20 27 27 H 1.48495 * 109.47084 * 329.99727 * 24 22 20 28 28 H 1.08995 * 109.47457 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47249 * 300.00403 * 1 2 3 30 30 H 1.09004 * 109.47422 * 59.99652 * 1 2 3 31 31 H 1.08003 * 119.99494 * 359.75813 * 6 5 4 32 32 H 1.07999 * 119.97571 * 180.02562 * 7 6 5 33 33 H 1.07998 * 120.02993 * 180.02562 * 12 10 8 34 34 H 1.09002 * 109.46889 * 300.00448 * 16 15 13 35 35 H 1.09000 * 109.47166 * 60.00105 * 16 15 13 36 36 H 0.97002 * 120.00065 * 359.97438 * 19 17 16 37 37 H 0.96996 * 120.00389 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.1100 0.0621 -2.3051 6 6 1.6562 1.3729 -2.3281 7 6 1.7669 2.1224 -3.4834 8 6 2.3299 1.5666 -4.6191 9 9 2.4370 2.3006 -5.7482 10 6 2.7833 0.2564 -4.5990 11 9 3.3332 -0.2854 -5.7077 12 6 2.6736 -0.4956 -3.4428 13 6 2.0322 -0.7105 1.2304 14 8 2.7268 -1.6929 1.1195 15 8 1.7080 -0.2519 2.4496 16 6 2.2276 -0.9858 3.5897 17 6 1.7626 -0.3292 4.8639 18 8 1.0618 0.6596 4.8161 19 7 2.1245 -0.8415 6.0569 20 6 1.7020 -0.2440 7.2162 21 1 1.0787 0.6370 7.1735 22 6 2.0747 -0.7724 8.4460 23 7 1.6693 -0.1999 9.5572 24 14 3.1522 -2.2965 8.5198 25 1 4.5810 -1.8922 8.5401 26 1 2.8379 -3.0657 9.7505 27 1 2.8943 -3.1433 7.3275 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.2168 1.8077 -1.4425 32 1 1.4138 3.1429 -3.5005 33 1 3.0269 -1.5161 -3.4263 34 1 1.8641 -2.0129 3.5569 35 1 3.3171 -0.9847 3.5566 36 1 2.6840 -1.6329 6.0952 37 1 1.9298 -0.5685 10.4158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731244739.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:13 Heat of formation + Delta-G solvation = -227.430078 kcal Electronic energy + Delta-G solvation = -26541.987480 eV Core-core repulsion = 21921.083792 eV Total energy + Delta-G solvation = -4620.903688 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.095 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.55144 -49.61744 -42.16280 -41.18045 -40.15467 -38.47550 -37.50440 -36.08136 -33.87571 -33.59615 -31.84747 -30.50974 -30.16086 -26.76808 -25.80758 -24.59322 -23.80090 -21.96797 -21.54082 -20.54596 -19.95299 -19.16021 -18.70651 -18.34828 -18.01311 -17.73620 -17.45102 -17.44578 -17.08888 -16.71241 -16.40624 -16.04352 -15.73790 -15.69088 -15.56772 -15.13758 -15.05990 -14.71245 -14.27584 -14.19215 -14.01295 -13.82954 -13.81950 -13.36718 -13.13399 -13.00342 -12.80784 -12.45472 -12.26249 -12.02917 -12.00608 -11.93300 -11.58368 -11.54359 -10.61028 -10.33771 -10.20186 -9.38792 -8.45578 -6.08564 -0.22697 -0.09087 0.76518 0.91031 1.30678 1.33985 1.44330 1.75832 2.01101 2.20435 2.23273 2.71960 2.82450 3.08917 3.27447 3.36369 3.52764 3.56100 3.68823 3.80200 3.86740 3.94454 4.08131 4.09946 4.12240 4.61687 4.65169 4.70701 4.77367 4.87253 4.97534 5.10595 5.18220 5.43011 5.47391 5.85971 5.98651 6.41652 6.52924 6.77708 7.26090 7.77105 8.70725 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.033838 B = 0.001964 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.274331 B =14253.972281 C =14723.080601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.098 3.902 3 H 0.147 0.853 4 O -0.298 6.298 5 C 0.146 3.854 6 C -0.181 4.181 7 C -0.068 4.068 8 C 0.017 3.983 9 F -0.139 7.139 10 C 0.096 3.904 11 F -0.133 7.133 12 C -0.163 4.163 13 C 0.465 3.535 14 O -0.515 6.515 15 O -0.331 6.331 16 C 0.067 3.933 17 C 0.450 3.550 18 O -0.605 6.605 19 N -0.577 5.577 20 C -0.331 4.331 21 H 0.063 0.937 22 C -0.008 4.008 23 N -0.925 5.925 24 Si 0.959 3.041 25 H -0.256 1.256 26 H -0.274 1.274 27 H -0.231 1.231 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.178 0.822 32 H 0.182 0.818 33 H 0.158 0.842 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.393 0.607 37 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.823 -0.830 -26.960 27.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.041 3.959 3 H 0.164 0.836 4 O -0.212 6.212 5 C 0.101 3.899 6 C -0.200 4.200 7 C -0.086 4.086 8 C -0.003 4.003 9 F -0.118 7.118 10 C 0.076 3.924 11 F -0.112 7.112 12 C -0.183 4.183 13 C 0.307 3.693 14 O -0.403 6.403 15 O -0.246 6.246 16 C -0.010 4.010 17 C 0.237 3.763 18 O -0.489 6.489 19 N -0.218 5.218 20 C -0.460 4.460 21 H 0.081 0.919 22 C -0.208 4.208 23 N -0.564 5.564 24 Si 0.779 3.221 25 H -0.180 1.180 26 H -0.199 1.199 27 H -0.154 1.154 28 H 0.089 0.911 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.195 0.805 32 H 0.199 0.801 33 H 0.176 0.824 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.229 0.771 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.623 -0.661 -26.811 26.868 hybrid contribution 0.744 -0.787 0.305 1.125 sum 2.367 -1.448 -26.505 26.650 Atomic orbital electron populations 1.22405 0.89272 1.05056 1.06401 1.21893 0.97643 0.97099 0.79221 0.83583 1.86140 1.81284 1.37772 1.16008 1.18680 0.94875 0.90729 0.85640 1.21604 1.04721 0.92631 1.01025 1.21184 0.95989 1.02305 0.89164 1.17826 1.07943 0.89139 0.85440 1.91507 1.94641 1.76367 1.49267 1.17364 0.99881 0.91231 0.83970 1.91526 1.83156 1.85968 1.50526 1.20213 1.05486 1.02779 0.89798 1.23638 0.77474 0.82995 0.85167 1.90696 1.35891 1.26358 1.87332 1.86501 1.69181 1.54925 1.14016 1.22667 1.01272 0.95969 0.81071 1.20089 0.84775 0.86562 0.84859 1.90583 1.41965 1.29042 1.87336 1.41822 1.47485 1.27973 1.04561 1.18996 1.31597 1.12011 0.83398 0.91869 1.26071 0.98914 1.02164 0.93659 1.69772 1.45646 1.42385 0.98620 0.85442 0.78893 0.77646 0.80111 1.18011 1.19854 1.15443 0.91129 0.88578 0.87384 0.80505 0.80098 0.82432 0.86475 0.86354 0.77129 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 9.10 71.98 0.65 -1.58 16 2 C 0.10 1.63 2.75 29.85 0.08 1.71 16 3 H 0.15 1.55 6.32 -2.39 -0.02 1.54 16 4 O -0.30 -5.56 9.33 -73.82 -0.69 -6.25 16 5 C 0.15 2.18 6.60 22.49 0.15 2.33 16 6 C -0.18 -1.75 8.24 22.37 0.18 -1.57 16 7 C -0.07 -0.66 10.02 22.29 0.22 -0.43 16 8 C 0.02 0.26 7.30 22.41 0.16 0.42 16 9 F -0.14 -2.52 17.18 44.97 0.77 -1.75 16 10 C 0.10 1.65 7.30 22.40 0.16 1.82 16 11 F -0.13 -2.66 17.18 44.97 0.77 -1.89 16 12 C -0.16 -2.62 9.96 22.40 0.22 -2.40 16 13 C 0.46 11.69 7.33 71.24 0.52 12.21 16 14 O -0.51 -15.52 16.25 28.41 0.46 -15.06 16 15 O -0.33 -9.83 9.66 -45.11 -0.44 -10.27 16 16 C 0.07 2.05 5.94 71.23 0.42 2.48 16 17 C 0.45 19.42 7.86 87.66 0.69 20.11 16 18 O -0.60 -32.08 16.08 15.74 0.25 -31.82 16 19 N -0.58 -25.81 5.09 -306.99 -1.56 -27.37 16 20 C -0.33 -18.49 10.16 84.04 0.85 -17.64 16 21 H 0.06 4.19 7.39 -2.91 -0.02 4.17 16 22 C -0.01 -0.42 5.50 84.93 0.47 0.04 16 23 N -0.92 -53.45 13.96 21.66 0.30 -53.15 16 24 Si 0.96 36.85 27.74 68.60 1.90 38.75 16 25 H -0.26 -9.33 7.11 99.48 0.71 -8.63 16 26 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 27 H -0.23 -7.44 6.52 99.48 0.65 -6.79 16 28 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.10 1.35 8.11 -2.39 -0.02 1.33 16 30 H 0.11 0.78 6.90 -2.39 -0.02 0.76 16 31 H 0.18 0.77 5.42 -2.91 -0.02 0.76 16 32 H 0.18 0.70 8.06 -2.91 -0.02 0.67 16 33 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 34 H 0.12 3.02 8.13 -2.39 -0.02 3.00 16 35 H 0.12 3.02 8.13 -2.39 -0.02 3.00 16 36 H 0.39 14.39 5.76 -92.71 -0.53 13.86 16 37 H 0.28 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -77.12 339.99 7.14 -69.98 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.56 Total: 21.33 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: 4.80 Total: 17.50 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -1.26 Total: -80.52 kcal Atomic # 8 Polarization: -63.00 SS G_CDS: -0.41 Total: -63.41 kcal Atomic # 9 Polarization: -5.18 SS G_CDS: 1.55 Total: -3.64 kcal Atomic # 14 Polarization: 36.85 SS G_CDS: 1.90 Total: 38.75 kcal Total: -77.12 7.14 -69.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731244739.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.453 kcal (2) G-P(sol) polarization free energy of solvation -77.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds