Wall clock time and date at job start Tue Mar 31 2020 06:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38138 * 120.03396 * 2 1 4 4 C 1.38257 * 120.06782 * 180.02562 * 3 2 1 5 5 C 1.38308 * 120.13411 * 0.02562 * 4 3 2 6 6 C 1.38094 * 120.06812 * 359.74205 * 5 4 3 7 7 C 1.38823 * 120.03525 * 180.02562 * 2 1 3 8 8 N 1.40153 * 120.06475 * 359.94874 * 7 2 1 9 9 C 1.34503 * 125.76048 * 173.61258 * 8 7 2 10 10 C 1.38143 * 107.37372 * 180.02562 * 9 8 7 11 11 C 1.47266 * 126.42413 * 180.02562 * 10 9 8 12 12 O 1.21529 * 120.00265 * 0.02562 * 11 10 9 13 13 O 1.34761 * 120.00179 * 179.97438 * 11 10 9 14 14 C 1.45202 * 117.00055 * 180.02562 * 13 11 10 15 15 C 1.50697 * 109.46716 * 180.02562 * 14 13 11 16 16 O 1.21289 * 120.00415 * 359.97438 * 15 14 13 17 17 N 1.34785 * 119.99787 * 180.02562 * 15 14 13 18 18 C 1.37096 * 120.00260 * 179.97438 * 17 15 14 19 19 H 1.08004 * 119.99741 * 359.97438 * 18 17 15 20 20 C 1.38943 * 120.00310 * 179.97438 * 18 17 15 21 21 N 1.31415 * 119.99959 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00154 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47025 * 60.00683 * 22 20 18 24 24 H 1.48503 * 109.47163 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47239 * 300.00450 * 22 20 18 26 26 C 1.41384 * 107.15619 * 0.02562 * 10 9 8 27 27 N 1.30462 * 108.05496 * 359.71818 * 26 10 9 28 28 H 1.08998 * 109.46519 * 263.54061 * 1 2 3 29 29 H 1.08999 * 109.46929 * 23.53794 * 1 2 3 30 30 H 1.09000 * 109.47116 * 143.53865 * 1 2 3 31 31 H 1.07997 * 119.96485 * 0.04712 * 3 2 1 32 32 H 1.07999 * 119.93048 * 179.97438 * 4 3 2 33 33 H 1.08006 * 119.96208 * 180.02562 * 5 4 3 34 34 H 1.07995 * 120.03460 * 180.25762 * 6 5 4 35 35 H 1.08004 * 126.31590 * 359.97438 * 9 8 7 36 36 H 1.08999 * 109.46748 * 299.99698 * 14 13 11 37 37 H 1.08994 * 109.47085 * 60.00122 * 14 13 11 38 38 H 0.97003 * 119.99561 * 359.97438 * 17 15 14 39 39 H 0.96994 * 119.99865 * 179.97438 * 21 20 18 40 40 H 1.07993 * 125.97546 * 180.02562 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5810 1.1967 -0.0005 5 6 4.2761 0.0010 -0.0016 6 6 3.5905 -1.1978 0.0032 7 6 2.2019 -1.2018 -0.0005 8 7 1.5032 -2.4168 0.0000 9 6 2.0516 -3.6389 -0.1218 10 6 1.0227 -4.5594 -0.0732 11 6 1.1539 -6.0232 -0.1674 12 8 2.2514 -6.5276 -0.3015 13 8 0.0570 -6.8035 -0.1037 14 6 0.2615 -8.2376 -0.2029 15 6 -1.0677 -8.9419 -0.1131 16 8 -2.0871 -8.2986 0.0217 17 7 -1.1237 -10.2869 -0.1815 18 6 -2.3329 -10.9277 -0.0993 19 1 -3.2406 -10.3548 0.0207 20 6 -2.3907 -12.3141 -0.1704 21 7 -1.2862 -13.0112 -0.3159 22 14 -4.0382 -13.1873 -0.0577 23 1 -4.9153 -12.7345 -1.1670 24 1 -3.8290 -14.6541 -0.1587 25 1 -4.6799 -12.8677 1.2428 26 6 -0.1799 -3.8328 0.0841 27 7 0.1179 -2.5635 0.1319 28 1 -0.3632 -0.1156 1.0212 29 1 -0.3633 0.9422 -0.4104 30 1 -0.3633 -0.8265 -0.6107 31 1 1.6584 2.1312 0.0008 32 1 4.1193 2.1330 -0.0010 33 1 5.3561 0.0048 -0.0016 34 1 4.1338 -2.1311 0.0066 35 1 3.1025 -3.8598 -0.2374 36 1 0.7329 -8.4722 -1.1573 37 1 0.9050 -8.5700 0.6117 38 1 -0.3084 -10.8013 -0.2889 39 1 -1.3265 -13.9790 -0.3652 40 1 -1.1712 -4.2549 0.1572 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732682599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:38 Heat of formation + Delta-G solvation = -4.560092 kcal Electronic energy + Delta-G solvation = -25879.620759 eV Core-core repulsion = 21854.903720 eV Total energy + Delta-G solvation = -4024.717039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.08622 -40.04276 -39.41393 -38.03975 -35.96096 -34.09594 -33.96408 -33.31168 -31.36209 -30.76593 -29.93947 -28.28928 -27.22263 -25.05585 -24.17897 -22.82493 -22.24307 -21.08357 -20.11284 -19.53265 -18.70804 -18.03396 -17.06242 -16.44265 -16.35624 -16.11823 -15.88314 -15.67826 -15.42310 -14.90677 -14.46349 -14.30800 -14.04033 -13.95720 -13.68074 -13.62017 -13.18368 -13.05235 -12.81659 -12.53669 -12.25436 -12.11871 -11.86142 -11.61148 -11.59785 -11.09412 -10.97340 -10.73541 -10.47183 -10.35546 -10.30167 -10.23323 -9.57201 -9.52448 -9.26756 -8.49785 -8.49188 -8.05697 -6.47516 -3.89485 0.29042 0.80178 1.45245 1.82181 1.93283 2.81496 3.13992 3.17660 3.24476 3.25867 3.29449 3.77195 4.01498 4.15660 4.22035 4.37905 4.46873 4.55690 4.74564 4.80051 4.82881 5.02123 5.06882 5.14204 5.17769 5.31135 5.40393 5.42019 5.54039 5.66009 5.74408 5.74708 5.86900 5.95788 6.07178 6.09165 6.18589 6.28825 6.65838 6.69439 7.17690 7.49937 7.90602 8.01103 8.51365 9.09512 9.42091 9.92143 10.69664 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.037196 B = 0.001901 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.598036 B =14728.287153 C =15456.243667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.074 4.074 3 C -0.102 4.102 4 C -0.120 4.120 5 C -0.102 4.102 6 C -0.132 4.132 7 C 0.146 3.854 8 N -0.308 5.308 9 C 0.131 3.869 10 C -0.259 4.259 11 C 0.541 3.459 12 O -0.523 6.523 13 O -0.320 6.320 14 C 0.063 3.937 15 C 0.439 3.561 16 O -0.576 6.576 17 N -0.553 5.553 18 C -0.302 4.302 19 H 0.106 0.894 20 C 0.025 3.975 21 N -0.898 5.898 22 Si 0.935 3.065 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.113 3.887 27 N -0.290 5.290 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.194 0.806 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.395 0.605 39 H 0.274 0.726 40 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.901 26.080 0.126 28.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.076 4.076 3 C -0.121 4.121 4 C -0.139 4.139 5 C -0.120 4.120 6 C -0.153 4.153 7 C 0.054 3.946 8 N -0.079 5.079 9 C -0.017 4.017 10 C -0.271 4.271 11 C 0.385 3.615 12 O -0.413 6.413 13 O -0.234 6.234 14 C -0.014 4.014 15 C 0.224 3.776 16 O -0.460 6.460 17 N -0.190 5.190 18 C -0.431 4.431 19 H 0.123 0.877 20 C -0.178 4.178 21 N -0.538 5.538 22 Si 0.761 3.239 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.198 1.198 26 C -0.075 4.075 27 N -0.107 5.107 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.211 0.789 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.229 0.771 39 H 0.084 0.916 40 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 11.094 27.347 0.282 29.513 hybrid contribution 0.340 -1.896 -0.100 1.929 sum 11.433 25.451 0.182 27.902 Atomic orbital electron populations 1.21095 0.89275 1.03227 1.03747 1.19792 0.97519 0.90738 0.99545 1.21026 0.94205 0.97092 0.99732 1.21271 0.94243 0.98452 0.99921 1.20972 1.00273 0.91326 0.99456 1.20903 0.91041 1.00013 1.03306 1.17487 0.90335 0.82485 1.04299 1.45661 1.05814 1.03919 1.52490 1.22931 0.99983 0.83356 0.95407 1.19349 0.93705 0.91185 1.22854 1.19907 0.82384 0.86488 0.72679 1.90827 1.27614 1.75644 1.47263 1.86578 1.34715 1.19358 1.82741 1.22745 0.98693 0.76578 1.03432 1.19321 0.88995 0.83376 0.85908 1.90556 1.35393 1.65337 1.54685 1.41695 1.10307 1.03796 1.63244 1.19675 0.86420 0.89499 1.47544 0.87660 1.25306 0.99107 0.96436 0.96923 1.69607 1.27253 1.07786 1.49171 0.85857 0.81151 0.77699 0.79168 1.19776 1.20906 1.19781 1.24670 1.00096 0.89421 0.93314 1.77502 0.88870 1.18679 1.25648 0.90649 0.92174 0.88558 0.84958 0.85274 0.84822 0.84895 0.78928 0.89474 0.89467 0.77149 0.91610 0.77428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 8.69 36.01 0.31 -0.72 16 2 C -0.07 -0.66 5.90 -104.44 -0.62 -1.28 16 3 C -0.10 -0.69 9.67 -39.61 -0.38 -1.07 16 4 C -0.12 -0.69 10.04 -39.55 -0.40 -1.08 16 5 C -0.10 -0.60 10.04 -39.61 -0.40 -1.00 16 6 C -0.13 -0.99 9.45 -39.40 -0.37 -1.36 16 7 C 0.15 1.42 6.65 -83.60 -0.56 0.86 16 8 N -0.31 -3.48 3.75 -10.20 -0.04 -3.52 16 9 C 0.13 1.47 10.59 -16.42 -0.17 1.29 16 10 C -0.26 -3.53 6.13 -105.07 -0.64 -4.17 16 11 C 0.54 8.90 7.95 34.40 0.27 9.17 16 12 O -0.52 -9.25 16.69 -19.29 -0.32 -9.57 16 13 O -0.32 -5.99 9.60 -47.34 -0.45 -6.45 16 14 C 0.06 1.21 5.95 36.00 0.21 1.42 16 15 C 0.44 10.56 7.86 -10.98 -0.09 10.47 16 16 O -0.58 -15.87 16.08 -14.11 -0.23 -16.09 16 17 N -0.55 -13.97 5.29 -10.96 -0.06 -14.03 16 18 C -0.30 -8.33 9.68 -14.94 -0.14 -8.48 16 19 H 0.11 3.02 7.16 -52.48 -0.38 2.64 16 20 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 21 N -0.90 -24.08 13.05 55.50 0.72 -23.36 16 22 Si 0.93 20.74 29.55 -169.99 -5.02 15.72 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 C 0.11 1.43 11.87 -16.94 -0.20 1.23 16 27 N -0.29 -3.56 8.57 30.88 0.26 -3.30 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.41 8.04 -51.93 -0.42 0.00 16 30 H 0.10 1.01 5.73 -51.93 -0.30 0.71 16 31 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 32 H 0.13 0.43 8.06 -52.49 -0.42 0.00 16 33 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 34 H 0.13 0.77 6.75 -52.49 -0.35 0.41 16 35 H 0.19 1.60 7.06 -52.48 -0.37 1.23 16 36 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.21 2.39 8.06 -52.49 -0.42 1.97 16 LS Contribution 357.47 15.07 5.39 5.39 Total: -1.00 -33.66 357.47 -7.25 -40.91 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -4.23 Total: 8.46 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: -3.27 Total: 5.85 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.89 Total: -44.20 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -1.00 Total: -32.11 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.66 -7.25 -40.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732682599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.349 kcal (2) G-P(sol) polarization free energy of solvation -33.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds