Wall clock time and date at job start Tue Mar 31 2020 06:12:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86796 * 119.99897 * 2 1 4 4 H 1.48498 * 109.47123 * 269.99670 * 3 2 1 5 5 H 1.48497 * 109.47402 * 29.99839 * 3 2 1 6 6 H 1.48504 * 109.47391 * 149.99948 * 3 2 1 7 7 C 1.38952 * 120.00264 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99984 * 201.25908 * 7 2 1 9 9 N 1.37095 * 119.99870 * 21.25587 * 7 2 1 10 10 C 1.46501 * 120.00255 * 17.01711 * 9 7 2 11 11 C 1.50707 * 109.46887 * 263.99050 * 10 9 7 12 12 O 1.20822 * 119.99575 * 359.97438 * 11 10 9 13 13 O 1.34226 * 119.99791 * 179.97438 * 11 10 9 14 14 C 1.34780 * 119.99921 * 197.01071 * 9 7 2 15 15 O 1.21299 * 119.99739 * 180.02562 * 14 9 7 16 16 C 1.50699 * 120.00056 * 0.02562 * 14 9 7 17 17 C 1.50697 * 109.46893 * 180.02562 * 16 14 9 18 18 C 1.38271 * 119.93795 * 89.99736 * 17 16 14 19 19 C 1.38124 * 120.07038 * 179.97438 * 18 17 16 20 20 C 1.38840 * 119.93194 * 0.02562 * 19 18 17 21 21 N 1.40184 * 120.06694 * 179.97438 * 20 19 18 22 22 C 1.35226 * 126.05116 * 179.97438 * 21 20 19 23 23 C 1.35319 * 107.71205 * 180.02562 * 22 21 20 24 24 C 1.39923 * 107.93014 * 0.02562 * 23 22 21 25 25 N 1.30878 * 108.24365 * 359.97438 * 24 23 22 26 26 C 1.38842 * 119.86262 * 0.27098 * 20 19 18 27 27 C 1.38114 * 119.93335 * 359.42227 * 26 20 19 28 28 H 0.96999 * 120.00602 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.46649 * 23.98435 * 10 9 7 30 30 H 1.08998 * 109.47305 * 143.98667 * 10 9 7 31 31 H 0.96702 * 116.99779 * 179.97438 * 13 11 10 32 32 H 1.08994 * 109.47043 * 59.99935 * 16 14 9 33 33 H 1.09000 * 109.46604 * 299.99681 * 16 14 9 34 34 H 1.08001 * 119.97024 * 359.97438 * 18 17 16 35 35 H 1.07998 * 120.03340 * 180.02562 * 19 18 17 36 36 H 1.07994 * 126.14672 * 0.02562 * 22 21 20 37 37 H 1.08001 * 126.03479 * 180.26302 * 23 22 21 38 38 H 1.08004 * 125.87841 * 180.02562 * 24 23 22 39 39 H 1.07998 * 120.02842 * 179.73054 * 26 20 19 40 40 H 1.08004 * 119.96536 * 180.27403 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4402 0.7001 7 6 2.0089 -1.2033 0.0005 8 1 3.0338 -1.2350 0.3397 9 7 1.3934 -2.3504 -0.4294 10 6 0.1662 -2.2691 -1.2254 11 6 -1.0299 -2.4204 -0.3211 12 8 -0.8732 -2.5802 0.8662 13 8 -2.2693 -2.3776 -0.8348 14 6 1.9174 -3.5530 -0.1199 15 8 1.3731 -4.5679 -0.5007 16 6 3.1796 -3.6367 0.6993 17 6 3.5514 -5.0828 0.9026 18 6 4.3750 -5.7183 -0.0083 19 6 4.7180 -7.0435 0.1757 20 6 4.2344 -7.7379 1.2765 21 7 4.5802 -9.0831 1.4657 22 6 4.1808 -9.8711 2.4895 23 6 4.7302 -11.0941 2.3063 24 6 5.4909 -11.0532 1.1327 25 7 5.4016 -9.8489 0.6282 26 6 3.4026 -7.0989 2.1861 27 6 3.0683 -5.7717 2.0001 28 1 -0.4851 0.8400 -0.0004 29 1 0.1222 -1.3026 -1.7274 30 1 0.1622 -3.0656 -1.9694 31 1 -3.0049 -2.4796 -0.2156 32 1 3.0164 -3.1635 1.6675 33 1 3.9869 -3.1245 0.1759 34 1 4.7506 -5.1778 -0.8646 35 1 5.3616 -7.5391 -0.5360 36 1 3.5387 -9.5772 3.3066 37 1 4.6009 -11.9516 2.9500 38 1 6.0542 -11.8744 0.7145 39 1 3.0214 -7.6376 3.0409 40 1 2.4249 -5.2729 2.7097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739078773.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:47 Heat of formation + Delta-G solvation = -2.602289 kcal Electronic energy + Delta-G solvation = -27124.420035 eV Core-core repulsion = 23099.787893 eV Total energy + Delta-G solvation = -4024.632142 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.52929 -39.58256 -38.96347 -37.90530 -35.23990 -34.57049 -33.84889 -31.66471 -31.22405 -30.76604 -30.02347 -28.23383 -26.27480 -24.74571 -23.06635 -22.76497 -21.02296 -20.58158 -20.28801 -19.24294 -18.27131 -17.15433 -16.91576 -16.28235 -15.64013 -15.33187 -15.25722 -15.19048 -15.00415 -14.45819 -14.34355 -14.20719 -13.94278 -13.51713 -13.32656 -13.25339 -12.93783 -12.79370 -12.30338 -12.02965 -11.67138 -11.54907 -11.38730 -11.24915 -11.02014 -10.94344 -10.63186 -10.60313 -10.51023 -10.26963 -10.17094 -9.65357 -9.19343 -9.11409 -8.83913 -8.68680 -8.04558 -7.82689 -6.58920 -4.07941 0.93034 1.52505 2.22462 2.36618 2.66507 3.02741 3.13883 3.16225 3.56088 3.66760 3.87814 4.00673 4.26414 4.44455 4.64954 4.68481 4.93591 4.97978 5.00989 5.18100 5.25062 5.46819 5.56667 5.65213 5.75859 5.79792 5.94790 6.04058 6.19351 6.25686 6.28205 6.31426 6.43555 6.54747 6.57387 6.63142 6.85464 6.89400 7.22671 7.27581 7.49090 7.56242 7.60472 8.14854 8.90154 9.14966 9.29053 9.69637 10.48809 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.019852 B = 0.002806 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.095760 B = 9976.660068 C =10779.151915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.038 3.962 3 Si 0.926 3.074 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.339 4.339 8 H 0.106 0.894 9 N -0.430 5.430 10 C 0.157 3.843 11 C 0.499 3.501 12 O -0.510 6.510 13 O -0.536 6.536 14 C 0.473 3.527 15 O -0.595 6.595 16 C -0.086 4.086 17 C -0.047 4.047 18 C -0.085 4.085 19 C -0.115 4.115 20 C 0.136 3.864 21 N -0.312 5.312 22 C 0.053 3.947 23 C -0.271 4.271 24 C 0.046 3.954 25 N -0.292 5.292 26 C -0.136 4.136 27 C -0.080 4.080 28 H 0.273 0.727 29 H 0.122 0.878 30 H 0.082 0.918 31 H 0.390 0.610 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.176 0.824 37 H 0.151 0.849 38 H 0.187 0.813 39 H 0.125 0.875 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.441 -10.757 2.722 12.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.168 4.168 3 Si 0.753 3.247 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.466 4.466 8 H 0.124 0.876 9 N -0.150 5.150 10 C 0.032 3.968 11 C 0.340 3.660 12 O -0.395 6.395 13 O -0.347 6.347 14 C 0.263 3.737 15 O -0.480 6.480 16 C -0.126 4.126 17 C -0.048 4.048 18 C -0.104 4.104 19 C -0.135 4.135 20 C 0.045 3.955 21 N -0.087 5.087 22 C -0.091 4.091 23 C -0.300 4.300 24 C -0.140 4.140 25 N -0.111 5.111 26 C -0.157 4.157 27 C -0.098 4.098 28 H 0.084 0.916 29 H 0.140 0.860 30 H 0.100 0.900 31 H 0.246 0.754 32 H 0.117 0.883 33 H 0.112 0.888 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.193 0.807 37 H 0.169 0.831 38 H 0.203 0.797 39 H 0.143 0.857 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.737 -10.250 1.639 12.375 hybrid contribution -0.617 0.401 1.329 1.519 sum 6.120 -9.849 2.968 11.970 Atomic orbital electron populations 1.69839 1.06229 1.28169 1.46341 1.25236 0.95229 1.00066 0.96224 0.85935 0.79393 0.80879 0.78519 1.20142 1.21017 1.19305 1.19663 0.97338 0.84413 1.45198 0.87648 1.43401 1.20552 1.05344 1.45662 1.20406 0.81069 1.03930 0.91438 1.23697 0.83172 0.70273 0.88904 1.90547 1.85889 1.45373 1.17709 1.84524 1.17383 1.86466 1.46286 1.19981 0.87464 0.83138 0.83147 1.90579 1.64721 1.34962 1.57737 1.20486 0.97577 0.92210 1.02337 1.19688 0.95192 0.95998 0.93888 1.20911 0.97391 0.93574 0.98494 1.20755 1.01513 0.94464 0.96750 1.17495 1.00176 0.79845 0.98003 1.45922 1.36345 1.08211 1.18193 1.22645 1.00900 0.91514 0.93993 1.21544 1.07642 0.98506 1.02265 1.24015 0.99464 0.95324 0.95201 1.77432 1.12980 1.04227 1.16503 1.20666 0.99926 0.95580 0.99483 1.20853 0.98180 0.92914 0.97895 0.91622 0.86023 0.90041 0.75361 0.88274 0.88776 0.85208 0.84914 0.80669 0.83139 0.79652 0.85680 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.74 9.27 55.50 0.51 -21.23 16 2 C 0.04 0.89 4.88 -17.47 -0.09 0.81 16 3 Si 0.93 18.43 29.60 -169.99 -5.03 13.40 16 4 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 7 C -0.34 -8.03 9.14 -14.93 -0.14 -8.16 16 8 H 0.11 2.29 6.56 -52.48 -0.34 1.95 16 9 N -0.43 -10.32 2.18 -116.09 -0.25 -10.57 16 10 C 0.16 3.66 5.14 -5.19 -0.03 3.64 16 11 C 0.50 11.96 6.50 36.01 0.23 12.19 16 12 O -0.51 -13.85 16.77 -18.75 -0.31 -14.16 16 13 O -0.54 -10.63 13.42 -39.25 -0.53 -11.16 16 14 C 0.47 10.91 7.41 -10.98 -0.08 10.83 16 15 O -0.59 -15.14 15.72 5.54 0.09 -15.05 16 16 C -0.09 -1.59 4.28 -29.04 -0.12 -1.72 16 17 C -0.05 -0.80 4.37 -104.59 -0.46 -1.25 16 18 C -0.09 -1.35 9.69 -39.61 -0.38 -1.73 16 19 C -0.12 -1.78 9.66 -39.40 -0.38 -2.16 16 20 C 0.14 2.08 6.69 -83.59 -0.56 1.52 16 21 N -0.31 -4.48 3.80 -10.70 -0.04 -4.52 16 22 C 0.05 0.61 10.80 -17.10 -0.18 0.42 16 23 C -0.27 -2.74 10.81 -39.99 -0.43 -3.17 16 24 C 0.05 0.51 12.03 -17.33 -0.21 0.30 16 25 N -0.29 -4.21 11.87 30.64 0.36 -3.84 16 26 C -0.14 -1.95 9.46 -39.40 -0.37 -2.32 16 27 C -0.08 -1.27 9.69 -39.61 -0.38 -1.65 16 28 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 29 H 0.12 2.82 6.39 -51.92 -0.33 2.48 16 30 H 0.08 1.79 7.61 -51.93 -0.40 1.40 16 31 H 0.39 6.01 9.10 45.56 0.41 6.42 16 32 H 0.10 1.79 8.04 -51.93 -0.42 1.37 16 33 H 0.09 1.54 7.63 -51.93 -0.40 1.14 16 34 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.13 1.95 7.70 -52.49 -0.40 1.55 16 36 H 0.18 1.45 7.04 -52.49 -0.37 1.08 16 37 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.19 1.34 8.06 -52.48 -0.42 0.92 16 39 H 0.13 1.41 6.74 -52.49 -0.35 1.06 16 40 H 0.13 1.99 8.06 -52.48 -0.42 1.57 16 LS Contribution 351.83 15.07 5.30 5.30 Total: -1.00 -33.39 351.83 -6.91 -40.30 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -3.42 Total: 14.00 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: -3.58 Total: 7.54 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.58 Total: -40.16 kcal Atomic # 8 Polarization: -39.62 SS G_CDS: -0.75 Total: -40.37 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.39 -6.91 -40.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739078773.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.698 kcal (2) G-P(sol) polarization free energy of solvation -33.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds