Wall clock time and date at job start Tue Mar 31 2020 05:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31357 * 1 3 3 Si 1.86801 * 120.00274 * 2 1 4 4 H 1.48498 * 109.47031 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46712 * 299.99846 * 3 2 1 6 6 H 1.48494 * 109.47080 * 59.99358 * 3 2 1 7 7 C 1.39053 * 120.00019 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00219 * 158.42594 * 7 2 1 9 9 N 1.36876 * 119.99918 * 338.42846 * 7 2 1 10 10 C 1.46492 * 120.00365 * 136.01330 * 9 7 2 11 11 C 1.50701 * 109.47307 * 280.68007 * 10 9 7 12 12 O 1.20827 * 119.99672 * 359.97438 * 11 10 9 13 13 O 1.34227 * 119.99958 * 180.02562 * 11 10 9 14 14 C 1.34782 * 119.99531 * 316.01068 * 9 7 2 15 15 O 1.21588 * 120.00270 * 6.77092 * 14 9 7 16 16 C 1.47728 * 119.99702 * 186.76072 * 14 9 7 17 17 C 1.39641 * 120.14985 * 142.18091 * 16 14 9 18 18 C 1.37937 * 119.84670 * 180.02562 * 17 16 14 19 19 C 1.38377 * 120.15338 * 0.02562 * 18 17 16 20 20 C 1.50700 * 119.84949 * 179.97438 * 19 18 17 21 21 N 1.46500 * 109.47048 * 90.00011 * 20 19 18 22 22 C 1.36873 * 126.39672 * 90.00275 * 21 20 19 23 23 C 1.34673 * 106.82146 * 179.73698 * 22 21 20 24 24 N 1.34130 * 108.01495 * 0.22802 * 23 22 21 25 25 C 1.30502 * 109.25847 * 359.97438 * 24 23 22 26 26 C 1.38375 * 120.30134 * 0.25553 * 19 18 17 27 27 C 1.37942 * 120.15527 * 359.48729 * 26 19 18 28 28 H 0.97004 * 120.00162 * 5.04881 * 1 2 3 29 29 H 1.09006 * 109.47292 * 40.67534 * 10 9 7 30 30 H 1.09001 * 109.47450 * 160.67193 * 10 9 7 31 31 H 0.96702 * 116.99808 * 179.97438 * 13 11 10 32 32 H 1.07997 * 120.07753 * 0.02562 * 17 16 14 33 33 H 1.08001 * 119.92637 * 179.97438 * 18 17 16 34 34 H 1.08998 * 109.46769 * 329.99799 * 20 19 18 35 35 H 1.08997 * 109.47107 * 210.00361 * 20 19 18 36 36 H 1.08004 * 126.59448 * 359.97438 * 22 21 20 37 37 H 1.07994 * 125.99619 * 180.22540 * 23 22 21 38 38 H 1.08001 * 125.65073 * 179.97438 * 25 24 23 39 39 H 1.08004 * 119.92514 * 179.74318 * 26 19 18 40 40 H 1.07996 * 120.07685 * 180.25827 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 3.7076 1.3463 -0.0006 5 1 1.8889 2.3963 -1.2126 6 1 1.8888 2.3964 1.2124 7 6 2.0088 -1.2042 0.0005 8 1 3.0320 -1.2372 -0.3433 9 7 1.3963 -2.3479 0.4369 10 6 1.5508 -3.5947 -0.3164 11 6 0.6257 -3.5809 -1.5060 12 8 -0.0896 -2.6275 -1.7039 13 8 0.5957 -4.6282 -2.3451 14 6 0.6511 -2.3268 1.5597 15 8 0.4210 -1.2709 2.1170 16 6 0.1137 -3.5867 2.1133 17 6 0.0623 -3.7799 3.4953 18 6 -0.4402 -4.9589 4.0053 19 6 -0.8922 -5.9491 3.1509 20 6 -1.4394 -7.2347 3.7156 21 7 -2.8825 -7.0994 3.9287 22 6 -3.8679 -7.3940 3.0256 23 6 -5.0421 -7.1310 3.6304 24 7 -4.7804 -6.6831 4.8673 25 6 -3.4888 -6.6591 5.0521 26 6 -0.8388 -5.7665 1.7803 27 6 -0.3437 -4.5903 1.2567 28 1 -0.4850 0.8368 -0.0739 29 1 2.5816 -3.6871 -0.6589 30 1 1.3043 -4.4403 0.3258 31 1 -0.0141 -4.5736 -3.0936 32 1 0.4152 -3.0082 4.1632 33 1 -0.4802 -5.1099 5.0740 34 1 -0.9505 -7.4514 4.6654 35 1 -1.2501 -8.0486 3.0157 36 1 -3.7305 -7.7694 2.0223 37 1 -6.0225 -7.2583 3.1958 38 1 -2.9878 -6.3423 5.9550 39 1 -1.1895 -6.5451 1.1190 40 1 -0.3064 -4.4475 0.1869 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739085833.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:28 Heat of formation + Delta-G solvation = 9.734794 kcal Electronic energy + Delta-G solvation = -27846.342287 eV Core-core repulsion = 23822.245121 eV Total energy + Delta-G solvation = -4024.097166 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.06438 -40.16540 -39.09394 -37.71934 -35.45791 -34.55213 -34.25438 -32.22087 -30.85098 -30.78749 -29.43835 -27.71578 -26.90127 -24.68811 -22.65610 -22.33410 -21.31053 -21.23751 -20.84926 -19.66811 -17.59648 -17.43564 -17.29132 -16.43815 -16.28849 -15.73658 -15.45435 -15.18870 -14.67159 -14.39715 -14.28895 -14.22451 -13.91320 -13.78741 -13.38925 -13.34159 -13.08046 -12.79214 -12.50438 -12.33654 -12.12340 -11.79631 -11.53233 -11.17585 -10.91652 -10.85258 -10.74136 -10.67740 -10.23838 -10.03752 -9.79659 -9.69506 -8.90061 -8.78499 -8.70461 -8.54727 -8.27361 -7.34998 -6.14010 -3.94410 1.08134 1.50460 2.03782 2.78101 2.92450 3.16814 3.28143 3.33564 3.39215 3.41563 3.80102 4.19385 4.37500 4.48185 4.51669 4.67430 4.72130 4.81840 4.96576 5.07474 5.13615 5.20710 5.38381 5.46515 5.52452 5.61488 5.63509 5.69590 5.89974 5.96206 6.05495 6.13028 6.18359 6.45558 6.51030 6.69484 6.72057 7.02360 7.08116 7.11817 7.52992 8.04276 8.11227 8.59817 8.85208 8.96187 9.46570 10.02829 10.90957 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.016452 B = 0.003498 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.491916 B = 8003.774076 C = 8746.348575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.081 3.919 3 Si 0.911 3.089 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.279 1.279 7 C -0.366 4.366 8 H 0.085 0.915 9 N -0.420 5.420 10 C 0.094 3.906 11 C 0.432 3.568 12 O -0.454 6.454 13 O -0.538 6.538 14 C 0.506 3.494 15 O -0.512 6.512 16 C -0.078 4.078 17 C -0.081 4.081 18 C -0.102 4.102 19 C -0.127 4.127 20 C 0.151 3.849 21 N -0.452 5.452 22 C -0.052 4.052 23 C -0.034 4.034 24 N -0.499 5.499 25 C 0.183 3.817 26 C -0.101 4.101 27 C -0.115 4.115 28 H 0.264 0.736 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.396 0.604 32 H 0.132 0.868 33 H 0.123 0.877 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.171 0.829 37 H 0.167 0.833 38 H 0.201 0.799 39 H 0.121 0.879 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.173 -17.577 3.302 17.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.134 4.134 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.205 1.205 7 C -0.492 4.492 8 H 0.103 0.897 9 N -0.142 5.142 10 C -0.032 4.032 11 C 0.269 3.731 12 O -0.336 6.336 13 O -0.350 6.350 14 C 0.294 3.706 15 O -0.389 6.389 16 C -0.083 4.083 17 C -0.100 4.100 18 C -0.120 4.120 19 C -0.129 4.129 20 C 0.029 3.971 21 N -0.135 5.135 22 C -0.185 4.185 23 C -0.182 4.182 24 N -0.217 5.217 25 C -0.099 4.099 26 C -0.119 4.119 27 C -0.134 4.134 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.130 0.870 31 H 0.253 0.747 32 H 0.150 0.850 33 H 0.141 0.859 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.189 0.811 37 H 0.184 0.816 38 H 0.218 0.782 39 H 0.139 0.861 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.859 -16.398 4.499 17.026 hybrid contribution 0.442 0.664 -1.557 1.750 sum -0.416 -15.734 2.942 16.012 Atomic orbital electron populations 1.69929 1.06663 1.27313 1.38223 1.25303 0.94708 0.99513 0.93921 0.86186 0.79922 0.82573 0.77591 1.19376 1.21133 1.20484 1.19009 0.96041 0.84254 1.49880 0.89715 1.42953 1.46260 1.06974 1.17986 1.21764 0.98329 0.93012 0.90140 1.24815 0.83750 0.80034 0.84462 1.90890 1.38358 1.33021 1.71311 1.84594 1.64048 1.46583 1.39802 1.17841 0.83396 0.87278 0.82045 1.90661 1.56846 1.30910 1.60527 1.20720 0.97828 0.95465 0.94238 1.21179 0.97807 0.96770 0.94216 1.20883 0.98792 0.93253 0.99110 1.19834 1.02851 0.96182 0.94004 1.20729 0.77179 0.96119 1.03092 1.45667 1.06960 1.48120 1.12703 1.22712 0.88391 1.10136 0.97306 1.22269 0.98003 1.05919 0.92008 1.70274 1.13441 1.19698 1.18274 1.24948 0.89094 1.03380 0.92494 1.20856 0.99268 0.97680 0.94115 1.21647 0.98465 0.93165 1.00080 0.92562 0.88320 0.87036 0.74686 0.84980 0.85917 0.88038 0.88258 0.81150 0.81614 0.78214 0.86095 0.85476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -23.85 11.74 55.50 0.65 -23.19 16 2 C 0.08 2.27 4.28 -17.45 -0.07 2.20 16 3 Si 0.91 21.73 29.61 -169.99 -5.03 16.70 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.37 -9.85 8.83 -15.00 -0.13 -9.98 16 8 H 0.09 2.16 7.92 -52.49 -0.42 1.74 16 9 N -0.42 -10.26 2.12 -117.21 -0.25 -10.50 16 10 C 0.09 1.77 5.47 -5.20 -0.03 1.74 16 11 C 0.43 8.36 6.35 36.01 0.23 8.59 16 12 O -0.45 -11.18 16.89 -18.75 -0.32 -11.50 16 13 O -0.54 -7.71 13.42 -39.25 -0.53 -8.24 16 14 C 0.51 12.72 6.82 -12.38 -0.08 12.64 16 15 O -0.51 -15.07 14.39 5.29 0.08 -14.99 16 16 C -0.08 -1.55 5.39 -104.97 -0.57 -2.11 16 17 C -0.08 -1.35 9.63 -39.17 -0.38 -1.73 16 18 C -0.10 -1.29 9.68 -39.64 -0.38 -1.68 16 19 C -0.13 -1.47 5.47 -104.52 -0.57 -2.04 16 20 C 0.15 1.21 6.27 -5.19 -0.03 1.18 16 21 N -0.45 -4.72 2.73 -119.87 -0.33 -5.05 16 22 C -0.05 -0.56 11.58 -16.56 -0.19 -0.76 16 23 C -0.03 -0.42 11.87 -17.81 -0.21 -0.64 16 24 N -0.50 -7.06 11.25 -14.66 -0.16 -7.23 16 25 C 0.18 2.12 12.56 -90.37 -1.14 0.99 16 26 C -0.10 -1.30 9.68 -39.64 -0.38 -1.69 16 27 C -0.11 -1.93 7.36 -39.16 -0.29 -2.22 16 28 H 0.26 7.64 8.32 -40.82 -0.34 7.30 16 29 H 0.10 1.64 8.12 -51.93 -0.42 1.22 16 30 H 0.11 1.80 4.32 -51.93 -0.22 1.58 16 31 H 0.40 4.13 9.10 45.56 0.41 4.55 16 32 H 0.13 2.23 8.04 -52.49 -0.42 1.81 16 33 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.10 0.58 8.08 -51.93 -0.42 0.16 16 35 H 0.10 0.61 8.08 -51.93 -0.42 0.19 16 36 H 0.17 1.36 8.06 -52.48 -0.42 0.94 16 37 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.20 1.67 8.06 -52.49 -0.42 1.24 16 39 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 40 H 0.13 2.23 4.02 -52.49 -0.21 2.02 16 LS Contribution 350.99 15.07 5.29 5.29 Total: -1.00 -38.84 350.99 -8.20 -47.05 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -3.37 Total: 7.17 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -4.23 Total: 4.50 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: -0.09 Total: -45.97 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -0.77 Total: -34.72 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -38.84 -8.20 -47.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739085833.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.781 kcal (2) G-P(sol) polarization free energy of solvation -38.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds