Wall clock time and date at job start Tue Mar 31 2020 06:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31365 * 1 3 3 Si 1.86801 * 120.00245 * 2 1 4 4 H 1.48496 * 109.46978 * 270.00226 * 3 2 1 5 5 H 1.48504 * 109.46995 * 30.00258 * 3 2 1 6 6 H 1.48491 * 109.47059 * 149.99998 * 3 2 1 7 7 C 1.39048 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00364 * 183.49631 * 7 2 1 9 9 N 1.36882 * 119.99842 * 3.50043 * 7 2 1 10 10 C 1.46496 * 119.99927 * 349.51854 * 9 7 2 11 11 C 1.50704 * 109.47088 * 83.25010 * 10 9 7 12 12 O 1.20825 * 119.99847 * 359.97438 * 11 10 9 13 13 O 1.34231 * 119.99753 * 179.97438 * 11 10 9 14 14 C 1.34775 * 119.99731 * 169.52090 * 9 7 2 15 15 O 1.21588 * 120.00104 * 2.34172 * 14 9 7 16 16 C 1.47730 * 119.99960 * 182.34031 * 14 9 7 17 17 C 1.39644 * 120.15326 * 222.16402 * 16 14 9 18 18 C 1.37939 * 119.84640 * 179.72502 * 17 16 14 19 19 C 1.38377 * 120.14940 * 0.25580 * 18 17 16 20 20 C 1.50700 * 119.84322 * 180.02562 * 19 18 17 21 21 N 1.46498 * 109.47263 * 90.00092 * 20 19 18 22 22 C 1.34947 * 126.03979 * 124.71722 * 21 20 19 23 23 C 1.35320 * 107.74622 * 179.83587 * 22 21 20 24 24 C 1.39875 * 107.91702 * 0.42170 * 23 22 21 25 25 N 1.30838 * 108.20380 * 359.73801 * 24 23 22 26 26 C 1.38374 * 120.30682 * 0.02562 * 19 18 17 27 27 C 1.37937 * 120.15240 * 359.95807 * 26 19 18 28 28 H 0.97003 * 119.99996 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.46841 * 203.24765 * 10 9 7 30 30 H 1.09001 * 109.47578 * 323.24849 * 10 9 7 31 31 H 0.96699 * 116.99180 * 179.97438 * 13 11 10 32 32 H 1.08001 * 120.07678 * 0.02562 * 17 16 14 33 33 H 1.07995 * 119.92152 * 180.27264 * 18 17 16 34 34 H 1.09007 * 109.46939 * 209.99590 * 20 19 18 35 35 H 1.08996 * 109.47285 * 329.99136 * 20 19 18 36 36 H 1.07992 * 126.12765 * 359.97438 * 22 21 20 37 37 H 1.07994 * 126.04383 * 180.15977 * 23 22 21 38 38 H 1.08004 * 125.89394 * 179.71675 * 24 23 22 39 39 H 1.08003 * 119.92381 * 179.97438 * 26 19 18 40 40 H 1.07996 * 120.07509 * 180.02562 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3137 0.0000 0.0000 3 14 2.2477 1.6177 0.0000 4 1 2.4952 2.0464 -1.4000 5 1 1.4452 2.6527 0.7001 6 1 3.5452 1.4401 0.7000 7 6 2.0089 -1.2042 -0.0005 8 1 3.0873 -1.2052 0.0565 9 7 1.3264 -2.3885 -0.0734 10 6 -0.1304 -2.4049 0.0801 11 6 -0.7784 -2.0734 -1.2395 12 8 -0.0936 -1.8461 -2.2086 13 8 -2.1164 -2.0305 -1.3381 14 6 1.9946 -3.5393 -0.2864 15 8 3.2075 -3.5313 -0.3713 16 6 1.2535 -4.8106 -0.4167 17 6 1.7300 -5.9672 0.2039 18 6 1.0299 -7.1495 0.0828 19 6 -0.1393 -7.1923 -0.6560 20 6 -0.8990 -8.4876 -0.7833 21 7 -1.8718 -8.5924 0.3070 22 6 -3.1997 -8.7897 0.1700 23 6 -3.7407 -8.8305 1.4097 24 6 -2.7093 -8.6423 2.3357 25 7 -1.5886 -8.4995 1.6758 26 6 -0.6141 -6.0513 -1.2785 27 6 0.0758 -4.8623 -1.1654 28 1 -0.4850 0.8401 0.0004 29 1 -0.4505 -3.3955 0.4033 30 1 -0.4257 -1.6665 0.8255 31 1 -2.4859 -1.8131 -2.2049 32 1 2.6421 -5.9349 0.7815 33 1 1.3950 -8.0437 0.5660 34 1 -1.4215 -8.5099 -1.7397 35 1 -0.2023 -9.3241 -0.7304 36 1 -3.7345 -8.8981 -0.7619 37 1 -4.7848 -8.9777 1.6429 38 1 -2.8193 -8.6187 3.4099 39 1 -1.5272 -6.0919 -1.8540 40 1 -0.2962 -3.9724 -1.6514 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739088608.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:55 Heat of formation + Delta-G solvation = 12.803335 kcal Electronic energy + Delta-G solvation = -28006.996396 eV Core-core repulsion = 23983.032292 eV Total energy + Delta-G solvation = -4023.964104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.16611 -40.08286 -38.83424 -37.77618 -35.37451 -34.57735 -34.02712 -31.97291 -30.71472 -30.69305 -29.84995 -27.80619 -26.72055 -24.85279 -22.49952 -22.34858 -21.16355 -21.06517 -20.60996 -19.51755 -17.39228 -17.28121 -17.13799 -16.61719 -16.21845 -15.66447 -15.31779 -15.08033 -14.72174 -14.48742 -14.18963 -14.06374 -13.78345 -13.69745 -13.27003 -13.07087 -12.85422 -12.72651 -12.36449 -12.25093 -11.96505 -11.90927 -11.40312 -11.23225 -11.01846 -10.79364 -10.65723 -10.48143 -10.41761 -10.41124 -9.73757 -9.47239 -9.19007 -8.82513 -8.69984 -8.67771 -8.42000 -8.13297 -6.46787 -4.03150 1.13214 1.63344 1.88445 2.55358 2.83170 3.08464 3.19399 3.23791 3.35196 3.59475 3.91019 4.05736 4.22637 4.36382 4.62245 4.70415 4.74558 4.97136 5.03128 5.04040 5.19468 5.28053 5.43641 5.51229 5.65626 5.69274 5.80511 5.92403 5.94530 6.06035 6.21541 6.44172 6.52024 6.58917 6.64190 6.76919 6.85818 6.93879 7.11693 7.40455 7.44442 7.68875 7.82286 8.24829 8.93371 8.98134 9.15938 9.68293 10.49844 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018028 B = 0.003528 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.786581 B = 7934.930894 C = 8531.448303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.028 3.972 3 Si 0.944 3.056 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.281 4.281 8 H 0.113 0.887 9 N -0.420 5.420 10 C 0.132 3.868 11 C 0.497 3.503 12 O -0.520 6.520 13 O -0.530 6.530 14 C 0.485 3.515 15 O -0.574 6.574 16 C -0.082 4.082 17 C -0.082 4.082 18 C -0.088 4.088 19 C -0.114 4.114 20 C 0.178 3.822 21 N -0.366 5.366 22 C 0.050 3.950 23 C -0.277 4.277 24 C 0.039 3.961 25 N -0.284 5.284 26 C -0.103 4.103 27 C -0.108 4.108 28 H 0.273 0.727 29 H 0.074 0.926 30 H 0.156 0.844 31 H 0.390 0.610 32 H 0.131 0.869 33 H 0.125 0.875 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.171 0.829 37 H 0.144 0.856 38 H 0.180 0.820 39 H 0.120 0.880 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.335 -14.693 0.154 17.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.172 4.172 3 Si 0.770 3.230 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.408 4.408 8 H 0.130 0.870 9 N -0.137 5.137 10 C 0.006 3.994 11 C 0.340 3.660 12 O -0.408 6.408 13 O -0.340 6.340 14 C 0.274 3.726 15 O -0.458 6.458 16 C -0.085 4.085 17 C -0.101 4.101 18 C -0.107 4.107 19 C -0.116 4.116 20 C 0.057 3.943 21 N -0.148 5.148 22 C -0.096 4.096 23 C -0.307 4.307 24 C -0.148 4.148 25 N -0.105 5.105 26 C -0.121 4.121 27 C -0.127 4.127 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.173 0.827 31 H 0.246 0.754 32 H 0.149 0.851 33 H 0.143 0.857 34 H 0.121 0.879 35 H 0.110 0.890 36 H 0.188 0.812 37 H 0.162 0.838 38 H 0.197 0.803 39 H 0.138 0.862 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.121 -14.336 0.218 16.478 hybrid contribution -1.140 1.064 -0.875 1.788 sum -9.261 -13.271 -0.657 16.197 Atomic orbital electron populations 1.69593 1.06065 1.27862 1.50723 1.25309 0.95813 1.00159 0.95908 0.85628 0.79033 0.79726 0.78593 1.20206 1.20700 1.19203 1.19932 0.93639 0.81527 1.45665 0.86965 1.43366 1.04204 1.06330 1.59835 1.21385 0.81373 1.02538 0.94097 1.23691 0.79057 0.71861 0.91390 1.90634 1.63760 1.46496 1.39879 1.84562 1.25191 1.83946 1.40349 1.17919 0.87432 0.83244 0.83998 1.90632 1.13256 1.86270 1.55646 1.20344 0.94866 0.95386 0.97939 1.21194 0.99479 0.91175 0.98223 1.20867 0.94421 0.97927 0.97478 1.19723 0.96540 0.94358 1.00944 1.20583 0.90441 0.96429 0.86804 1.48849 1.05771 1.54827 1.05354 1.22563 0.84857 1.01838 1.00337 1.21485 1.00726 1.16893 0.91601 1.23897 0.90366 1.00081 1.00425 1.77423 1.23646 1.22961 0.86471 1.20838 0.99438 0.92014 0.99860 1.21652 0.94360 0.98379 0.98265 0.91540 0.90847 0.82670 0.75417 0.85112 0.85734 0.87889 0.88959 0.81189 0.83806 0.80290 0.86184 0.85476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.83 8.02 55.50 0.45 -22.39 16 2 C 0.03 0.71 5.33 -17.45 -0.09 0.62 16 3 Si 0.94 20.84 29.56 -169.99 -5.02 15.82 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.28 -7.74 9.32 -15.00 -0.14 -7.88 16 8 H 0.11 3.21 7.20 -52.49 -0.38 2.83 16 9 N -0.42 -10.87 2.18 -117.21 -0.26 -11.12 16 10 C 0.13 3.01 4.79 -5.19 -0.02 2.99 16 11 C 0.50 11.17 3.72 36.01 0.13 11.30 16 12 O -0.52 -13.45 16.31 -18.75 -0.31 -13.75 16 13 O -0.53 -9.68 13.42 -39.26 -0.53 -10.21 16 14 C 0.48 12.31 7.25 -12.38 -0.09 12.22 16 15 O -0.57 -16.24 16.55 5.29 0.09 -16.15 16 16 C -0.08 -1.69 4.99 -104.97 -0.52 -2.21 16 17 C -0.08 -1.45 9.66 -39.17 -0.38 -1.83 16 18 C -0.09 -1.29 9.68 -39.64 -0.38 -1.67 16 19 C -0.11 -1.53 5.32 -104.52 -0.56 -2.09 16 20 C 0.18 1.75 6.63 -5.19 -0.03 1.71 16 21 N -0.37 -4.22 3.67 -62.55 -0.23 -4.45 16 22 C 0.05 0.48 11.45 -17.22 -0.20 0.28 16 23 C -0.28 -2.74 10.80 -40.01 -0.43 -3.17 16 24 C 0.04 0.44 12.03 -17.36 -0.21 0.23 16 25 N -0.28 -3.87 12.41 30.63 0.38 -3.49 16 26 C -0.10 -1.52 9.68 -39.64 -0.38 -1.90 16 27 C -0.11 -2.01 7.58 -39.16 -0.30 -2.30 16 28 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 29 H 0.07 1.51 5.63 -51.93 -0.29 1.22 16 30 H 0.16 3.72 5.94 -51.93 -0.31 3.41 16 31 H 0.39 5.39 9.10 45.56 0.41 5.80 16 32 H 0.13 2.28 8.06 -52.49 -0.42 1.85 16 33 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.10 0.70 8.01 -51.93 -0.42 0.29 16 35 H 0.09 0.78 8.08 -51.93 -0.42 0.36 16 36 H 0.17 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.18 1.52 8.06 -52.48 -0.42 1.10 16 39 H 0.12 1.45 8.06 -52.48 -0.42 1.02 16 40 H 0.13 2.57 3.78 -52.49 -0.20 2.37 16 LS Contribution 346.04 15.07 5.21 5.21 Total: -1.00 -35.05 346.04 -7.09 -42.15 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -3.27 Total: 12.07 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: -3.61 Total: 6.31 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.34 Total: -41.45 kcal Atomic # 8 Polarization: -39.37 SS G_CDS: -0.75 Total: -40.11 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.05 -7.09 -42.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739088608.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.950 kcal (2) G-P(sol) polarization free energy of solvation -35.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds