Wall clock time and date at job start Tue Mar 31 2020 05:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86802 * 119.99628 * 2 1 4 4 H 1.48500 * 109.47301 * 239.99966 * 3 2 1 5 5 H 1.48506 * 109.47209 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47089 * 120.00243 * 3 2 1 7 7 C 1.38942 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99998 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99938 * 0.02562 * 7 2 1 10 10 C 1.34782 * 119.99594 * 180.02562 * 9 7 2 11 11 O 1.21284 * 120.00460 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99528 * 179.97438 * 10 9 7 13 13 O 1.45204 * 109.46768 * 179.97438 * 12 10 9 14 14 C 1.34708 * 116.99684 * 179.97438 * 13 12 10 15 15 O 1.21473 * 120.00427 * 0.02562 * 14 13 12 16 16 C 1.47729 * 120.00073 * 179.97438 * 14 13 12 17 17 C 1.39656 * 120.14537 * 5.58208 * 16 14 13 18 18 C 1.37925 * 119.84363 * 180.02562 * 17 16 14 19 19 C 1.38388 * 120.15325 * 359.97438 * 18 17 16 20 20 C 1.38349 * 120.30143 * 359.72935 * 19 18 17 21 21 C 1.37971 * 120.15085 * 0.54459 * 20 19 18 22 22 C 1.50691 * 120.07587 * 179.72623 * 21 20 19 23 23 N 1.46502 * 109.47303 * 97.26132 * 22 21 20 24 24 C 1.34947 * 126.03843 * 124.99812 * 23 22 21 25 25 C 1.35318 * 107.74457 * 180.02562 * 24 23 22 26 26 C 1.39865 * 107.92052 * 359.97438 * 25 24 23 27 27 N 1.30838 * 108.20458 * 0.02562 * 26 25 24 28 28 H 0.97001 * 120.00294 * 359.97438 * 1 2 3 29 29 H 0.96995 * 120.00593 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47162 * 60.00000 * 12 10 9 31 31 H 1.08999 * 109.47136 * 299.99722 * 12 10 9 32 32 H 1.08003 * 120.07558 * 0.04124 * 17 16 14 33 33 H 1.08000 * 119.92156 * 179.97438 * 18 17 16 34 34 H 1.07996 * 119.84853 * 179.97438 * 19 18 17 35 35 H 1.08002 * 119.92693 * 180.27805 * 20 19 18 36 36 H 1.08999 * 109.47405 * 337.25881 * 22 21 20 37 37 H 1.09005 * 109.46924 * 217.26221 * 22 21 20 38 38 H 1.08000 * 126.12904 * 0.04065 * 24 23 22 39 39 H 1.08003 * 126.03545 * 180.26255 * 25 24 23 40 40 H 1.07999 * 125.89341 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6966 -1.2125 5 1 1.2829 2.7465 0.0006 6 1 3.1018 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3234 -2.3905 -0.0016 10 6 1.9974 -3.5577 -0.0016 11 8 3.2103 -3.5577 -0.0011 12 6 1.2439 -4.8629 -0.0022 13 8 2.1876 -5.9665 -0.0027 14 6 1.6727 -7.2113 -0.0027 15 8 0.4685 -7.3706 -0.0028 16 6 2.5726 -8.3829 -0.0038 17 6 3.9532 -8.2069 0.1127 18 6 4.7876 -9.3051 0.1105 19 6 4.2598 -10.5790 -0.0063 20 6 2.8927 -10.7608 -0.1159 21 6 2.0468 -9.6708 -0.1207 22 6 0.5585 -9.8705 -0.2464 23 7 -0.0527 -9.8379 1.0846 24 6 -1.0596 -9.0293 1.4763 25 6 -1.3323 -9.3082 2.7721 26 6 -0.4626 -10.3223 3.1862 27 7 0.3050 -10.6404 2.1756 28 1 -0.4850 0.8400 0.0004 29 1 0.3535 -2.3907 -0.0016 30 1 0.6176 -4.9205 -0.8924 31 1 0.6170 -4.9209 0.8876 32 1 4.3663 -7.2133 0.2046 33 1 5.8555 -9.1704 0.2001 34 1 4.9178 -11.4354 -0.0079 35 1 2.4870 -11.7580 -0.2022 36 1 0.3594 -10.8347 -0.7141 37 1 0.1358 -9.0748 -0.8599 38 1 -1.5587 -8.2919 0.8650 39 1 -2.0909 -8.8349 3.3778 40 1 -0.4304 -10.7660 4.1703 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741346701.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:17 Heat of formation + Delta-G solvation = -3.663900 kcal Electronic energy + Delta-G solvation = -27021.768318 eV Core-core repulsion = 22997.090141 eV Total energy + Delta-G solvation = -4024.678177 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25125 -40.49762 -39.08226 -38.07375 -36.28628 -34.11193 -33.99566 -31.75675 -31.38904 -30.95407 -29.78495 -28.45245 -26.52580 -24.86683 -23.94981 -22.35744 -21.31842 -20.85843 -20.32714 -19.61714 -18.11219 -18.07985 -17.24605 -16.83162 -16.40795 -16.17482 -15.68160 -15.57006 -14.84685 -14.66705 -14.36974 -14.23182 -14.14245 -13.94700 -13.70036 -13.22885 -13.03966 -12.80137 -12.66427 -12.48298 -12.21264 -12.14177 -11.89252 -11.64555 -11.43879 -11.13893 -10.65425 -10.51406 -10.50569 -10.33843 -10.22722 -9.62932 -9.35385 -9.28328 -9.19267 -8.57077 -8.50468 -8.11774 -6.53033 -3.95285 0.44697 1.00693 2.02055 2.44437 2.58680 2.67684 2.94748 3.13147 3.20919 3.25477 3.57874 3.69976 4.07548 4.22133 4.39847 4.55564 4.74268 4.77931 4.92413 5.01393 5.07960 5.11585 5.14479 5.19927 5.32135 5.39826 5.52435 5.63573 5.65561 5.71945 5.88034 5.98622 6.00952 6.10827 6.13470 6.16905 6.50592 6.57657 6.71783 7.08244 7.44612 7.72071 7.79266 7.91082 8.44719 9.03674 9.35409 9.85154 10.64037 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.015757 B = 0.002826 C = 0.002492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.567796 B = 9906.218216 C =11232.903564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.551 5.551 10 C 0.437 3.563 11 O -0.576 6.576 12 C 0.063 3.937 13 O -0.318 6.318 14 C 0.507 3.493 15 O -0.513 6.513 16 C -0.106 4.106 17 C -0.060 4.060 18 C -0.124 4.124 19 C -0.088 4.088 20 C -0.103 4.103 21 C -0.047 4.047 22 C 0.168 3.832 23 N -0.358 5.358 24 C 0.089 3.911 25 C -0.292 4.292 26 C 0.041 3.959 27 N -0.304 5.304 28 H 0.275 0.725 29 H 0.395 0.605 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.147 0.853 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.086 0.914 37 H 0.127 0.873 38 H 0.174 0.826 39 H 0.143 0.857 40 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.004 -21.423 0.072 21.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.433 4.433 8 H 0.123 0.877 9 N -0.188 5.188 10 C 0.222 3.778 11 O -0.460 6.460 12 C -0.015 4.015 13 O -0.232 6.232 14 C 0.352 3.648 15 O -0.404 6.404 16 C -0.107 4.107 17 C -0.078 4.078 18 C -0.142 4.142 19 C -0.107 4.107 20 C -0.122 4.122 21 C -0.048 4.048 22 C 0.047 3.953 23 N -0.140 5.140 24 C -0.057 4.057 25 C -0.322 4.322 26 C -0.145 4.145 27 N -0.125 5.125 28 H 0.085 0.915 29 H 0.228 0.772 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.165 0.835 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.105 0.895 37 H 0.145 0.855 38 H 0.191 0.809 39 H 0.161 0.839 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 1.320 -21.993 -0.485 22.038 hybrid contribution -1.052 1.538 0.378 1.902 sum 0.267 -20.455 -0.106 20.457 Atomic orbital electron populations 1.69602 1.06002 1.28647 1.49467 1.25308 0.95685 0.99868 0.96790 0.85860 0.78774 0.80052 0.79223 1.19732 1.20831 1.19723 1.19678 0.93465 0.81755 1.48402 0.87657 1.41685 1.09354 1.04058 1.63711 1.19291 0.88338 0.84043 0.86131 1.90559 1.13405 1.86758 1.55326 1.22779 0.90768 0.84368 1.03541 1.86595 1.40064 1.13824 1.82725 1.21201 0.87035 0.83816 0.72708 1.90692 1.16226 1.86650 1.46850 1.19004 0.93482 0.90414 1.07850 1.21660 0.91718 1.00727 0.93706 1.21260 1.00493 0.92197 1.00277 1.21423 0.95117 0.97577 0.96535 1.20964 0.93183 0.98121 0.99910 1.19854 0.95288 0.91695 0.97998 1.20761 0.89082 1.04455 0.80954 1.48446 1.27026 1.28765 1.09739 1.22618 0.91379 0.95261 0.96453 1.21490 1.08308 1.06277 0.96094 1.23800 0.94733 0.97605 0.98340 1.77283 1.23571 1.17381 0.94289 0.91531 0.77156 0.89420 0.89433 0.83540 0.84848 0.85157 0.84966 0.89538 0.85521 0.80876 0.83891 0.80536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.77 13.05 55.50 0.72 -23.05 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.51 29.55 -169.99 -5.02 15.49 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.30 -8.30 9.68 -14.94 -0.14 -8.44 16 8 H 0.11 3.00 7.16 -52.48 -0.38 2.62 16 9 N -0.55 -13.71 5.29 -10.96 -0.06 -13.77 16 10 C 0.44 10.36 7.86 -10.98 -0.09 10.27 16 11 O -0.58 -15.77 16.08 -14.11 -0.23 -16.00 16 12 C 0.06 1.16 5.95 36.01 0.21 1.38 16 13 O -0.32 -5.83 9.02 -47.19 -0.43 -6.26 16 14 C 0.51 7.98 7.84 34.61 0.27 8.26 16 15 O -0.51 -7.86 10.51 -19.25 -0.20 -8.06 16 16 C -0.11 -1.44 5.87 -104.98 -0.62 -2.06 16 17 C -0.06 -0.75 9.62 -39.17 -0.38 -1.13 16 18 C -0.12 -1.21 10.03 -39.64 -0.40 -1.61 16 19 C -0.09 -0.77 10.04 -39.49 -0.40 -1.16 16 20 C -0.10 -1.00 9.66 -39.64 -0.38 -1.38 16 21 C -0.05 -0.55 5.35 -104.21 -0.56 -1.11 16 22 C 0.17 1.87 5.78 -5.20 -0.03 1.84 16 23 N -0.36 -4.70 3.51 -62.55 -0.22 -4.92 16 24 C 0.09 1.15 9.74 -17.22 -0.17 0.98 16 25 C -0.29 -3.57 10.80 -40.01 -0.43 -4.01 16 26 C 0.04 0.51 12.03 -17.37 -0.21 0.30 16 27 N -0.30 -4.23 12.41 30.62 0.38 -3.85 16 28 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 30 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 31 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.15 1.94 7.62 -52.48 -0.40 1.54 16 33 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.13 1.03 8.05 -52.49 -0.42 0.60 16 36 H 0.09 0.76 8.03 -51.93 -0.42 0.34 16 37 H 0.13 1.41 5.85 -51.93 -0.30 1.11 16 38 H 0.17 2.01 7.41 -52.49 -0.39 1.62 16 39 H 0.14 1.46 8.06 -52.48 -0.42 1.04 16 40 H 0.18 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 355.33 15.07 5.35 5.35 Total: -1.00 -33.12 355.33 -7.41 -40.53 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -4.30 Total: 11.83 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -3.41 Total: 2.71 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.83 Total: -45.59 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.85 Total: -30.32 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.12 -7.41 -40.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741346701.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.865 kcal (2) G-P(sol) polarization free energy of solvation -33.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds