Wall clock time and date at job start Tue Mar 31 2020 04:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35901 * 116.99532 * 2 1 4 4 C 1.38737 * 120.05170 * 180.02562 * 3 2 1 5 5 C 1.38142 * 119.94357 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05677 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.94607 * 179.70519 * 6 5 4 8 8 F 1.39889 * 109.47318 * 29.99716 * 7 6 5 9 9 F 1.39897 * 109.47332 * 149.99964 * 7 6 5 10 10 C 1.50705 * 109.47042 * 269.99619 * 7 6 5 11 11 O 1.20835 * 119.99636 * 25.00235 * 10 7 6 12 12 O 1.34216 * 120.00295 * 205.00086 * 10 7 6 13 13 C 1.45207 * 117.00286 * 179.97438 * 12 10 7 14 14 C 1.50702 * 109.47225 * 179.97438 * 13 12 10 15 15 O 1.21292 * 119.99865 * 0.02562 * 14 13 12 16 16 N 1.34774 * 119.99864 * 180.02562 * 14 13 12 17 17 C 1.37093 * 120.00166 * 179.97438 * 16 14 13 18 18 H 1.07997 * 120.00122 * 0.02562 * 17 16 14 19 19 C 1.38957 * 120.00339 * 179.97438 * 17 16 14 20 20 N 1.31409 * 119.99629 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99978 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47229 * 90.00424 * 21 19 17 23 23 H 1.48506 * 109.46832 * 210.00064 * 21 19 17 24 24 H 1.48503 * 109.47266 * 330.00007 * 21 19 17 25 25 C 1.38268 * 120.11063 * 359.97438 * 6 5 4 26 26 C 1.38149 * 120.05738 * 0.02562 * 25 6 5 27 27 H 1.09003 * 109.47369 * 299.99418 * 1 2 3 28 28 H 1.08993 * 109.47840 * 59.99890 * 1 2 3 29 29 H 1.09006 * 109.47060 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.03029 * 0.02562 * 4 3 2 31 31 H 1.07997 * 119.97354 * 179.97438 * 5 4 3 32 32 H 1.08991 * 109.46978 * 300.00578 * 13 12 10 33 33 H 1.09002 * 109.46642 * 60.00288 * 13 12 10 34 34 H 0.97005 * 119.99770 * 0.02562 * 16 14 13 35 35 H 0.97002 * 119.99999 * 179.97438 * 20 19 17 36 36 H 1.08005 * 119.97210 * 179.97438 * 25 6 5 37 37 H 1.07998 * 120.03203 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2109 0.0000 4 6 3.4312 1.2849 -0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3018 3.6758 0.0016 7 6 3.9859 5.0186 0.0089 8 9 5.2176 4.9180 -0.6465 9 9 3.1821 5.9551 -0.6500 10 6 4.2089 5.4610 1.4322 11 8 4.2853 4.6397 2.3152 12 8 4.3226 6.7673 1.7190 13 6 4.5356 7.1205 3.1112 14 6 4.6388 8.6185 3.2393 15 8 4.5419 9.3195 2.2543 16 7 4.8389 9.1792 4.4485 17 6 4.9333 10.5419 4.5650 18 1 4.8470 11.1661 3.6880 19 6 5.1390 11.1201 5.8117 20 7 5.2435 10.3605 6.8790 21 14 5.2669 12.9769 5.9705 22 1 3.9163 13.5479 6.2045 23 1 6.1525 13.3160 7.1134 24 1 5.8338 13.5428 4.7200 25 6 1.9209 3.6048 0.0021 26 6 1.2913 2.3751 0.0016 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 4.0208 0.3800 -0.0014 31 1 5.1344 2.5751 0.0000 32 1 3.6984 6.7610 3.7094 33 1 5.4587 6.6615 3.4653 34 1 4.9168 8.6184 5.2362 35 1 5.3875 10.7640 7.7493 36 1 1.3340 4.5115 0.0038 37 1 0.2128 2.3201 0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756343723.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:44 Heat of formation + Delta-G solvation = -214.077731 kcal Electronic energy + Delta-G solvation = -27200.620035 eV Core-core repulsion = 22580.295349 eV Total energy + Delta-G solvation = -4620.324686 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.095 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.45649 -47.46895 -40.72692 -40.38162 -38.32359 -37.89431 -36.42403 -34.04692 -31.94269 -31.48810 -31.41682 -29.08151 -28.10054 -26.71906 -24.65315 -23.20704 -22.70798 -21.07036 -19.69007 -18.87344 -18.68493 -18.17667 -18.05572 -17.74372 -16.73843 -16.49975 -16.18897 -16.09181 -15.82654 -15.20532 -14.83101 -14.35180 -14.28441 -14.16433 -14.05988 -13.92841 -13.83578 -13.76458 -13.51264 -13.20437 -12.90346 -12.46161 -12.41804 -12.17186 -11.95594 -11.64938 -11.59558 -11.30832 -11.16043 -10.71316 -10.63494 -10.45622 -10.31866 -9.63766 -9.44473 -8.76134 -8.57811 -8.11851 -6.52918 -3.95002 0.71812 0.92288 1.65121 1.99897 2.77569 3.11613 3.16115 3.22249 3.27926 3.45801 3.63462 3.68286 4.09177 4.13207 4.37121 4.40145 4.49696 4.68843 4.71387 4.86095 4.88825 5.01282 5.07540 5.10739 5.18583 5.34300 5.56200 5.57533 5.65927 5.84333 5.93414 5.97447 6.19905 6.23505 6.88303 7.32915 7.45472 7.90126 8.44308 9.03903 9.34890 9.84537 10.64201 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.025376 B = 0.002296 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.142185 B =12191.020481 C =12589.205788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.314 6.314 3 C 0.152 3.848 4 C -0.153 4.153 5 C -0.026 4.026 6 C -0.190 4.190 7 C 0.378 3.622 8 F -0.167 7.167 9 F -0.166 7.166 10 C 0.429 3.571 11 O -0.463 6.463 12 O -0.305 6.305 13 C 0.057 3.943 14 C 0.437 3.563 15 O -0.572 6.572 16 N -0.550 5.550 17 C -0.303 4.303 18 H 0.107 0.893 19 C 0.025 3.975 20 N -0.897 5.897 21 Si 0.935 3.065 22 H -0.276 1.276 23 H -0.282 1.282 24 H -0.268 1.268 25 C -0.035 4.035 26 C -0.210 4.210 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.102 0.898 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.395 0.605 35 H 0.274 0.726 36 H 0.138 0.862 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.677 -20.857 -11.780 25.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.227 6.227 3 C 0.106 3.894 4 C -0.171 4.171 5 C -0.044 4.044 6 C -0.191 4.191 7 C 0.340 3.660 8 F -0.148 7.148 9 F -0.146 7.146 10 C 0.266 3.734 11 O -0.349 6.349 12 O -0.218 6.218 13 C -0.020 4.020 14 C 0.221 3.779 15 O -0.456 6.456 16 N -0.188 5.188 17 C -0.432 4.432 18 H 0.125 0.875 19 C -0.178 4.178 20 N -0.537 5.537 21 Si 0.761 3.239 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.192 1.192 25 C -0.053 4.053 26 C -0.229 4.229 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.121 0.879 30 H 0.159 0.841 31 H 0.159 0.841 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.229 0.771 35 H 0.084 0.916 36 H 0.156 0.844 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.589 -20.710 -11.969 25.095 hybrid contribution -0.049 0.755 0.752 1.066 sum -7.638 -19.955 -11.217 24.133 Atomic orbital electron populations 1.23140 0.77886 1.04310 1.01754 1.86094 1.21846 1.26662 1.88050 1.19190 0.92467 0.84294 0.93469 1.20371 0.91378 0.98424 1.06946 1.20720 1.00478 0.90204 0.92959 1.19604 0.94864 0.91831 1.12804 1.18691 0.76971 0.86845 0.83523 1.93113 1.43471 1.96483 1.81685 1.93137 1.72834 1.66690 1.81982 1.23782 0.75526 0.82738 0.91322 1.90732 1.43466 1.53874 1.46831 1.86626 1.80085 1.23654 1.31418 1.22968 1.03379 0.97489 0.78157 1.19210 0.86328 0.87183 0.85138 1.90588 1.55319 1.62713 1.36970 1.41686 1.62380 1.08150 1.06565 1.19739 1.46942 0.81306 0.95167 0.87529 1.25327 0.96790 1.00918 0.94716 1.69612 1.48600 1.36255 0.99233 0.85780 0.78318 0.81613 0.78148 1.20227 1.20790 1.19226 1.20752 0.92666 0.98453 0.93433 1.21178 1.00507 0.91600 1.09569 0.92238 0.92311 0.87944 0.84126 0.84095 0.88969 0.88941 0.77126 0.91581 0.84380 0.84448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.69 10.50 -19.43 -0.20 -2.89 16 3 C 0.15 1.45 6.69 -39.22 -0.26 1.18 16 4 C -0.15 -1.46 9.99 -39.43 -0.39 -1.85 16 5 C -0.03 -0.27 9.36 -39.61 -0.37 -0.64 16 6 C -0.19 -2.29 4.39 -104.60 -0.46 -2.75 16 7 C 0.38 5.35 2.26 -29.03 -0.07 5.28 16 8 F -0.17 -2.32 16.19 2.25 0.04 -2.29 16 9 F -0.17 -2.45 16.06 2.25 0.04 -2.41 16 10 C 0.43 7.04 7.33 36.01 0.26 7.30 16 11 O -0.46 -7.79 15.98 -18.76 -0.30 -8.09 16 12 O -0.30 -5.85 9.59 -45.86 -0.44 -6.29 16 13 C 0.06 1.08 5.94 36.01 0.21 1.29 16 14 C 0.44 10.52 7.86 -10.99 -0.09 10.44 16 15 O -0.57 -16.04 16.08 -14.11 -0.23 -16.26 16 16 N -0.55 -13.81 5.29 -10.96 -0.06 -13.87 16 17 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 18 H 0.11 3.06 7.16 -52.49 -0.38 2.68 16 19 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 20 N -0.90 -23.85 13.05 55.50 0.72 -23.13 16 21 Si 0.93 20.61 29.55 -169.99 -5.02 15.59 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 C -0.03 -0.37 9.39 -39.60 -0.37 -0.74 16 26 C -0.21 -1.89 9.04 -39.43 -0.36 -2.24 16 27 H 0.06 0.25 7.66 -51.93 -0.40 -0.14 16 28 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 31 H 0.14 1.31 7.60 -52.49 -0.40 0.91 16 32 H 0.09 1.54 8.13 -51.93 -0.42 1.11 16 33 H 0.09 1.55 8.13 -51.93 -0.42 1.13 16 34 H 0.40 9.33 7.90 -40.82 -0.32 9.00 16 35 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 36 H 0.14 1.31 7.60 -52.48 -0.40 0.91 16 37 H 0.14 0.87 6.30 -52.49 -0.33 0.54 16 LS Contribution 343.49 15.07 5.18 5.18 Total: -1.00 -32.89 343.49 -4.86 -37.75 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -3.45 Total: 6.23 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: -1.14 Total: 10.50 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.67 Total: -37.00 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -1.17 Total: -33.54 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.07 Total: -4.70 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.89 -4.86 -37.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756343723.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.329 kcal (2) G-P(sol) polarization free energy of solvation -32.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds