Wall clock time and date at job start Tue Mar 31 2020 04:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50698 * 109.46969 * 2 1 4 4 N 1.30398 * 125.98142 * 269.99731 * 3 2 1 5 5 N 1.39915 * 108.98710 * 179.97438 * 4 3 2 6 6 C 1.46490 * 125.74310 * 180.02562 * 5 4 3 7 7 C 1.34317 * 108.52065 * 0.02562 * 5 4 3 8 8 Cl 1.73603 * 126.32644 * 179.97438 * 7 5 4 9 9 C 1.38365 * 107.35374 * 359.97438 * 7 5 4 10 10 C 1.47148 * 126.44856 * 179.73992 * 9 7 5 11 11 O 1.21539 * 120.00096 * 90.02422 * 10 9 7 12 12 O 1.34771 * 119.99691 * 270.01875 * 10 9 7 13 13 C 1.45203 * 116.99837 * 179.97438 * 12 10 9 14 14 C 1.50699 * 109.47090 * 180.02562 * 13 12 10 15 15 O 1.21282 * 120.00009 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99977 * 179.97438 * 14 13 12 17 17 C 1.46508 * 119.99868 * 180.02562 * 16 14 13 18 18 C 1.50694 * 109.46857 * 180.02562 * 17 16 14 19 19 H 1.08004 * 120.00362 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00005 * 180.02562 * 18 17 16 21 21 N 1.31520 * 119.99798 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00290 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47201 * 89.99466 * 22 20 18 24 24 H 1.48491 * 109.46904 * 209.99795 * 22 20 18 25 25 H 1.48507 * 109.46660 * 329.99522 * 22 20 18 26 26 H 1.08996 * 109.47510 * 60.00207 * 1 2 3 27 27 H 1.09003 * 109.47415 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47292 * 299.99797 * 1 2 3 29 29 H 1.09004 * 109.47106 * 239.99683 * 2 1 3 30 30 H 1.08997 * 109.46790 * 119.99977 * 2 1 3 31 31 H 1.09001 * 109.47316 * 269.96432 * 6 5 4 32 32 H 1.09000 * 109.47145 * 29.96106 * 6 5 4 33 33 H 1.09001 * 109.47746 * 149.95982 * 6 5 4 34 34 H 1.08995 * 109.47341 * 300.00288 * 13 12 10 35 35 H 1.08999 * 109.47093 * 60.00588 * 13 12 10 36 36 H 0.96991 * 120.00071 * 0.02562 * 16 14 13 37 37 H 1.08995 * 109.47045 * 300.00107 * 17 16 14 38 38 H 1.08999 * 109.46999 * 60.00169 * 17 16 14 39 39 H 0.97001 * 119.99876 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2877 2.1431 -1.0552 5 7 2.7331 3.4049 -0.6463 6 6 3.1210 4.5043 -1.5332 7 6 2.7451 3.4385 0.6964 8 17 3.2203 4.7825 1.6872 9 6 2.3089 2.2042 1.1442 10 6 2.1661 1.7835 2.5470 11 8 1.1151 1.9617 3.1309 12 8 3.2007 1.2007 3.1843 13 6 2.9885 0.8121 4.5672 14 6 4.2452 0.1824 5.1105 15 8 5.2235 0.0723 4.4021 16 7 4.2824 -0.2576 6.3839 17 6 5.5043 -0.8694 6.9122 18 6 5.2841 -1.2727 8.3474 19 1 4.3296 -1.0912 8.8190 20 6 6.3015 -1.8726 9.0588 21 7 7.4640 -2.0932 8.4846 22 14 6.0283 -2.3733 10.8376 23 1 5.5096 -3.7639 10.8864 24 1 7.3145 -2.2985 11.5759 25 1 5.0436 -1.4553 11.4645 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 4.1865 4.4353 -1.7528 32 1 2.5538 4.4395 -2.4617 33 1 2.9115 5.4562 -1.0452 34 1 2.7395 1.6935 5.1582 35 1 2.1696 0.0949 4.6216 36 1 3.5001 -0.1693 6.9505 37 1 5.7540 -1.7508 6.3217 38 1 6.3228 -0.1516 6.8576 39 1 8.1797 -2.5155 8.9850 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767833260.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:06 Heat of formation + Delta-G solvation = -55.600609 kcal Electronic energy + Delta-G solvation = -24971.186405 eV Core-core repulsion = 20941.823234 eV Total energy + Delta-G solvation = -4029.363171 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.097 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.93829 -40.21667 -38.63252 -37.47033 -36.27007 -35.20270 -34.23267 -32.40876 -32.30833 -30.89696 -29.16936 -27.55384 -26.57930 -24.37577 -23.21197 -22.43910 -21.09504 -20.15693 -19.91679 -18.34867 -17.51782 -17.12413 -16.55177 -16.31373 -16.17350 -15.48454 -15.32794 -15.07781 -14.69637 -14.34202 -14.24259 -13.91462 -13.56307 -13.38910 -13.01524 -12.95672 -12.84525 -12.52444 -12.17875 -12.12168 -11.98787 -11.85733 -11.75377 -11.53278 -11.07803 -11.01005 -10.91630 -10.71335 -10.67686 -10.33980 -9.72136 -9.43400 -9.21943 -9.07353 -8.77523 -7.97581 -6.19057 -4.26371 0.82148 0.96736 1.80500 1.93487 2.00400 2.62583 3.19629 3.23634 3.29867 3.32219 3.78969 4.06667 4.27016 4.34172 4.60896 4.64321 4.77074 4.83459 4.90092 5.02322 5.08546 5.14697 5.17098 5.25109 5.27328 5.35851 5.65386 5.72962 5.82343 5.98476 6.08438 6.26023 6.99534 7.23687 7.32040 7.46888 7.58202 7.65977 7.92730 8.51221 8.72176 8.97870 9.40001 10.91089 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.019514 B = 0.002399 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.544946 B =11670.571457 C =12274.590829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.052 4.052 3 C 0.136 3.864 4 N -0.268 5.268 5 N -0.350 5.350 6 C 0.091 3.909 7 C 0.170 3.830 8 Cl 0.020 6.980 9 C -0.237 4.237 10 C 0.549 3.451 11 O -0.492 6.492 12 O -0.318 6.318 13 C 0.046 3.954 14 C 0.500 3.500 15 O -0.532 6.532 16 N -0.707 5.707 17 C 0.251 3.749 18 C -0.545 4.545 19 H 0.064 0.936 20 C 0.064 3.936 21 N -0.885 5.885 22 Si 0.905 3.095 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.393 0.607 37 H 0.030 0.970 38 H 0.029 0.971 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.379 12.502 -19.497 26.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.091 4.091 3 C -0.031 4.031 4 N -0.090 5.090 5 N -0.131 5.131 6 C -0.049 4.049 7 C 0.012 3.988 8 Cl 0.048 6.952 9 C -0.251 4.251 10 C 0.390 3.610 11 O -0.379 6.379 12 O -0.232 6.232 13 C -0.032 4.032 14 C 0.283 3.717 15 O -0.410 6.410 16 N -0.357 5.357 17 C 0.131 3.869 18 C -0.583 4.583 19 H 0.082 0.918 20 C -0.140 4.140 21 N -0.522 5.522 22 Si 0.732 3.268 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.226 0.774 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.638 12.673 -21.045 27.626 hybrid contribution -0.331 0.122 2.308 2.334 sum -12.969 12.795 -18.737 26.134 Atomic orbital electron populations 1.21742 0.93315 1.02702 1.02788 1.20175 0.96865 0.87303 1.04774 1.22312 0.96037 0.96998 0.87708 1.77304 1.21232 0.89235 1.21189 1.48352 1.49914 1.12306 1.02482 1.22140 1.02585 0.85711 0.94463 1.21845 1.00915 0.91575 0.84454 1.98460 1.89698 1.41709 1.65288 1.18733 1.20128 0.94142 0.92122 1.19892 0.81505 0.74196 0.85451 1.90860 1.28480 1.51460 1.67077 1.86740 1.39969 1.70117 1.26351 1.22941 0.98711 1.01609 0.79908 1.19865 0.88391 0.80154 0.83331 1.90717 1.36137 1.56192 1.57910 1.46358 1.18566 1.60086 1.10681 1.19173 0.80885 0.93338 0.93493 1.21208 0.99500 1.41446 0.96129 0.91752 1.24955 0.94803 0.95314 0.98934 1.69976 1.03254 1.41785 1.37202 0.86393 0.77715 0.78978 0.83704 1.20418 1.21000 1.19714 0.92230 0.91253 0.91872 0.88989 0.89134 0.89349 0.88004 0.88826 0.88358 0.88254 0.77415 0.95242 0.95266 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.89 37.16 0.37 -0.89 16 2 C -0.05 -0.51 6.33 -27.88 -0.18 -0.69 16 3 C 0.14 1.66 6.52 -82.00 -0.53 1.13 16 4 N -0.27 -3.14 12.49 33.91 0.42 -2.72 16 5 N -0.35 -3.57 3.98 -64.31 -0.26 -3.83 16 6 C 0.09 0.48 11.28 59.84 0.67 1.16 16 7 C 0.17 2.02 7.54 -16.42 -0.12 1.89 16 8 Cl 0.02 0.21 28.56 -51.86 -1.48 -1.27 16 9 C -0.24 -3.24 6.01 -105.03 -0.63 -3.87 16 10 C 0.55 8.31 7.34 34.35 0.25 8.56 16 11 O -0.49 -7.88 16.90 -19.30 -0.33 -8.21 16 12 O -0.32 -5.31 9.77 -47.37 -0.46 -5.78 16 13 C 0.05 0.71 5.95 36.01 0.21 0.92 16 14 C 0.50 10.04 7.91 -10.98 -0.09 9.95 16 15 O -0.53 -13.09 16.50 -14.10 -0.23 -13.32 16 16 N -0.71 -14.53 5.55 -61.47 -0.34 -14.88 16 17 C 0.25 6.55 5.43 -5.19 -0.03 6.52 16 18 C -0.54 -14.52 9.28 -34.44 -0.32 -14.84 16 19 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.88 -25.82 13.29 55.43 0.74 -25.08 16 22 Si 0.91 20.62 29.54 -169.99 -5.02 15.60 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.09 0.91 8.00 -51.93 -0.42 0.50 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.34 7.77 -51.93 -0.40 -0.07 16 34 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.39 6.75 8.32 -40.82 -0.34 6.41 16 37 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 368.24 15.07 5.55 5.55 Total: -1.00 -35.04 368.24 -6.82 -41.86 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -4.92 Total: 0.58 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: -0.49 Total: 11.50 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: 0.56 Total: -46.51 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -1.02 Total: -27.31 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 17 Polarization: 0.21 SS G_CDS: -1.48 Total: -1.27 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.04 -6.82 -41.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767833260.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.745 kcal (2) G-P(sol) polarization free energy of solvation -35.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds