Wall clock time and date at job start Tue Mar 31 2020 05:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00221 * 2 1 4 4 H 1.48503 * 109.47153 * 270.00151 * 3 2 1 5 5 H 1.48502 * 109.46885 * 29.99649 * 3 2 1 6 6 H 1.48494 * 109.47584 * 149.99750 * 3 2 1 7 7 C 1.38956 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99867 * 359.97438 * 7 2 1 9 9 N 1.37092 * 120.00398 * 180.02562 * 7 2 1 10 10 C 1.34770 * 120.00230 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00154 * 359.97438 * 10 9 7 12 12 C 1.50705 * 120.00290 * 179.97438 * 10 9 7 13 13 O 1.45193 * 109.47085 * 179.97438 * 12 10 9 14 14 C 1.34733 * 116.99838 * 179.97438 * 13 12 10 15 15 O 1.21492 * 119.99853 * 0.02562 * 14 13 12 16 16 C 1.47588 * 120.00158 * 179.97438 * 14 13 12 17 17 C 1.41540 * 126.52218 * 180.02562 * 16 14 13 18 18 C 1.35351 * 105.50175 * 179.75808 * 17 16 14 19 19 N 1.35052 * 107.23985 * 0.35511 * 18 17 16 20 20 C 1.46500 * 124.88137 * 179.89530 * 19 18 17 21 21 C 1.50706 * 109.46949 * 124.71798 * 20 19 18 22 22 C 1.38231 * 119.99884 * 269.72390 * 21 20 19 23 23 C 1.38232 * 119.99941 * 179.77036 * 22 21 20 24 24 C 1.38241 * 119.99967 * 0.50748 * 23 22 21 25 25 C 1.38238 * 119.99768 * 359.74620 * 24 23 22 26 26 C 1.38234 * 120.00037 * 0.02562 * 25 24 23 27 27 N 1.28470 * 110.24013 * 359.62306 * 19 18 17 28 28 H 0.96997 * 119.99750 * 359.97438 * 1 2 3 29 29 H 0.97006 * 119.99775 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.46726 * 59.99418 * 12 10 9 31 31 H 1.09001 * 109.46910 * 299.99828 * 12 10 9 32 32 H 1.07995 * 127.25207 * 0.02562 * 17 16 14 33 33 H 1.08000 * 126.38745 * 180.21034 * 18 17 16 34 34 H 1.09000 * 109.46609 * 4.71977 * 20 19 18 35 35 H 1.09000 * 109.47175 * 244.71772 * 20 19 18 36 36 H 1.07997 * 120.00101 * 0.02562 * 22 21 20 37 37 H 1.08002 * 120.00546 * 180.23234 * 23 22 21 38 38 H 1.08001 * 120.00379 * 179.72801 * 24 23 22 39 39 H 1.08003 * 119.99873 * 179.97438 * 25 24 23 40 40 H 1.07997 * 119.99984 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4690 -2.1387 0.0014 9 7 3.3799 -1.2034 0.0011 10 6 4.0537 -2.3705 0.0011 11 8 3.4473 -3.4210 0.0011 12 6 5.5608 -2.3706 0.0011 13 8 6.0447 -3.7395 0.0017 14 6 7.3804 -3.9160 0.0012 15 8 8.1205 -2.9525 0.0008 16 6 7.9446 -5.2798 0.0024 17 6 9.3176 -5.6235 0.0026 18 6 9.3519 -6.9765 0.0093 19 7 8.0726 -7.4094 0.0048 20 6 7.6642 -8.8163 0.0073 21 6 6.7417 -9.0694 1.1718 22 6 7.2601 -9.4633 2.3912 23 6 6.4144 -9.6910 3.4607 24 6 5.0493 -9.5349 3.3079 25 6 4.5306 -9.1461 2.0870 26 6 5.3767 -8.9139 1.0188 27 7 7.2653 -6.4100 0.0038 28 1 -0.4850 0.8400 0.0004 29 1 3.8649 -0.3633 0.0007 30 1 5.9241 -1.8567 0.8910 31 1 5.9241 -1.8568 -0.8889 32 1 10.1605 -4.9483 0.0023 33 1 10.2373 -7.5950 0.0146 34 1 8.5461 -9.4504 0.0978 35 1 7.1456 -9.0457 -0.9236 36 1 8.3262 -9.5892 2.5095 37 1 6.8196 -9.9951 4.4145 38 1 4.3882 -9.7170 4.1422 39 1 3.4641 -9.0245 1.9675 40 1 4.9713 -8.6105 0.0649 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000772474392.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:21 Heat of formation + Delta-G solvation = 0.417602 kcal Electronic energy + Delta-G solvation = -26315.489392 eV Core-core repulsion = 22290.988202 eV Total energy + Delta-G solvation = -4024.501190 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.85661 -40.03013 -39.41378 -38.20639 -36.05127 -34.54303 -33.98594 -31.73892 -31.24085 -31.16771 -30.88819 -28.72328 -27.05871 -24.67936 -23.54227 -22.87430 -21.88957 -21.40477 -20.20146 -19.56173 -18.53278 -17.98938 -17.37782 -16.99323 -16.52088 -16.14632 -16.00937 -15.52112 -15.36294 -15.02444 -14.82867 -14.10969 -14.02076 -13.70906 -13.65551 -13.43315 -13.27656 -12.91778 -12.82355 -12.70919 -12.34164 -12.18755 -12.09461 -11.50450 -11.28019 -11.21358 -10.94081 -10.63887 -10.59529 -10.41425 -9.99548 -9.61130 -9.46090 -9.31910 -9.14762 -9.12203 -8.57905 -8.22850 -6.33642 -3.86048 0.88463 1.17899 1.37483 1.90947 2.23564 2.79344 3.03845 3.08189 3.16325 3.21790 3.58010 3.64182 3.96641 4.09140 4.26542 4.42533 4.53036 4.63932 4.70723 4.82265 4.86972 4.96864 5.17182 5.17355 5.24537 5.36345 5.38493 5.46721 5.56721 5.63533 5.66764 5.75933 5.78879 6.14422 6.16379 6.24827 6.31326 6.50955 6.55076 6.72433 7.50765 7.65341 7.99536 8.07808 8.54840 8.90069 9.36338 9.73478 10.78874 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.013195 B = 0.002789 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.505585 B =10035.433390 C =11704.899679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.044 3.956 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.268 1.268 7 C -0.306 4.306 8 H 0.122 0.878 9 N -0.582 5.582 10 C 0.450 3.550 11 O -0.553 6.553 12 C 0.057 3.943 13 O -0.309 6.309 14 C 0.553 3.447 15 O -0.508 6.508 16 C -0.004 4.004 17 C -0.173 4.173 18 C -0.023 4.023 19 N -0.276 5.276 20 C 0.164 3.836 21 C -0.122 4.122 22 C -0.100 4.100 23 C -0.128 4.128 24 C -0.105 4.105 25 C -0.118 4.118 26 C -0.075 4.075 27 N -0.214 5.214 28 H 0.275 0.725 29 H 0.373 0.627 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.165 0.835 33 H 0.184 0.816 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.223 -19.226 2.710 28.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.193 1.193 7 C -0.434 4.434 8 H 0.139 0.861 9 N -0.222 5.222 10 C 0.235 3.765 11 O -0.434 6.434 12 C -0.021 4.021 13 O -0.222 6.222 14 C 0.395 3.605 15 O -0.395 6.395 16 C -0.162 4.162 17 C -0.201 4.201 18 C -0.164 4.164 19 N -0.066 5.066 20 C 0.045 3.955 21 C -0.123 4.123 22 C -0.119 4.119 23 C -0.146 4.146 24 C -0.124 4.124 25 C -0.136 4.136 26 C -0.094 4.094 27 N -0.051 5.051 28 H 0.085 0.915 29 H 0.206 0.794 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.183 0.817 33 H 0.201 0.799 34 H 0.131 0.869 35 H 0.123 0.877 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.147 0.853 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 18.672 -20.047 2.689 27.527 hybrid contribution 1.445 1.919 0.089 2.404 sum 20.117 -18.127 2.778 27.221 Atomic orbital electron populations 1.69616 1.05643 1.27660 1.48779 1.25026 0.95509 0.98019 0.97382 0.86680 0.79894 0.83882 0.79070 1.19435 1.20026 1.19305 1.19423 0.78718 0.96845 1.48448 0.86054 1.42023 1.07586 1.05679 1.66941 1.19190 0.86929 0.85128 0.85254 1.90615 1.69005 1.30686 1.53090 1.22795 0.95199 0.80448 1.03679 1.86706 1.21968 1.30824 1.82687 1.19657 0.81079 0.87139 0.72627 1.90834 1.60945 1.40842 1.46868 1.20763 0.91975 0.90194 1.13262 1.21724 0.95877 0.94362 1.08133 1.22886 0.89012 0.95549 1.08958 1.45793 1.03920 1.06647 1.50240 1.20913 0.99840 0.75790 0.98977 1.19651 0.94258 1.03658 0.94754 1.20983 0.99575 0.98930 0.92381 1.21110 0.93711 1.01095 0.98649 1.21294 0.95426 0.98078 0.97560 1.21275 1.00507 0.98904 0.92949 1.21150 0.92458 0.95977 0.99789 1.73841 1.21875 0.93979 1.15433 0.91471 0.79403 0.89302 0.89254 0.81742 0.79868 0.86867 0.87712 0.86159 0.85907 0.85800 0.85335 0.85278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.64 13.96 55.50 0.77 -24.86 16 2 C 0.04 1.22 5.50 -17.47 -0.10 1.12 16 3 Si 0.88 19.47 27.74 -169.99 -4.71 14.75 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 7 C -0.31 -8.76 10.16 -14.93 -0.15 -8.91 16 8 H 0.12 3.95 7.39 -52.49 -0.39 3.56 16 9 N -0.58 -14.27 5.09 -10.96 -0.06 -14.32 16 10 C 0.45 10.93 7.86 -10.99 -0.09 10.84 16 11 O -0.55 -15.85 16.08 -14.12 -0.23 -16.08 16 12 C 0.06 1.10 5.95 36.01 0.21 1.31 16 13 O -0.31 -6.31 9.77 -47.26 -0.46 -6.77 16 14 C 0.55 9.98 7.97 34.54 0.28 10.25 16 15 O -0.51 -9.37 16.72 -19.26 -0.32 -9.70 16 16 C 0.00 -0.07 7.17 -82.78 -0.59 -0.66 16 17 C -0.17 -2.00 10.81 -39.35 -0.43 -2.42 16 18 C -0.02 -0.20 11.40 -17.16 -0.20 -0.39 16 19 N -0.28 -2.91 3.40 -62.51 -0.21 -3.13 16 20 C 0.16 1.15 6.53 -5.19 -0.03 1.11 16 21 C -0.12 -1.13 5.22 -104.62 -0.55 -1.67 16 22 C -0.10 -0.84 9.70 -39.59 -0.38 -1.22 16 23 C -0.13 -1.10 10.05 -39.58 -0.40 -1.50 16 24 C -0.11 -1.00 10.05 -39.58 -0.40 -1.39 16 25 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 26 C -0.08 -0.82 9.70 -39.58 -0.38 -1.20 16 27 N -0.21 -3.24 11.71 33.41 0.39 -2.85 16 28 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.37 7.96 5.76 -40.82 -0.24 7.72 16 30 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 33 H 0.18 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.11 0.35 7.98 -51.93 -0.41 -0.07 16 35 H 0.10 0.63 8.09 -51.93 -0.42 0.21 16 36 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 40 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 363.49 15.07 5.48 5.48 Total: -1.00 -37.59 363.49 -7.38 -44.97 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -4.43 Total: 8.91 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -3.60 Total: 3.60 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.90 Total: -45.16 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -1.01 Total: -32.55 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.71 Total: 14.75 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.59 -7.38 -44.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772474392.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.387 kcal (2) G-P(sol) polarization free energy of solvation -37.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds