Wall clock time and date at job start Tue Mar 31 2020 06:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30838 * 125.89938 * 2 1 4 4 N 1.40084 * 108.20943 * 179.97438 * 3 2 1 5 5 C 1.46497 * 126.03658 * 180.02562 * 4 3 2 6 6 C 1.34951 * 107.92158 * 359.75684 * 4 3 2 7 7 C 1.50704 * 126.12351 * 180.24078 * 6 4 3 8 8 C 1.35315 * 107.74532 * 0.38993 * 6 4 3 9 9 C 1.50703 * 126.03723 * 179.87398 * 8 6 4 10 10 C 1.50701 * 109.47064 * 269.71320 * 9 8 6 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 S 1.65603 * 119.99626 * 180.02562 * 12 10 9 14 14 O 1.42097 * 104.27438 * 181.07626 * 13 12 10 15 15 O 1.42098 * 104.27936 * 308.93178 * 13 12 10 16 16 C 1.81401 * 104.44778 * 65.00306 * 13 12 10 17 17 C 1.52998 * 109.46839 * 179.97438 * 16 13 12 18 18 C 1.50706 * 109.47158 * 179.97438 * 17 16 13 19 19 H 1.08000 * 119.99580 * 0.02562 * 18 17 16 20 20 C 1.37873 * 119.99836 * 179.97438 * 18 17 16 21 21 N 1.31518 * 120.00444 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99716 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47230 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47415 * 120.00382 * 22 20 18 25 25 H 1.48508 * 109.46769 * 240.00327 * 22 20 18 26 26 H 1.08994 * 109.47461 * 270.02496 * 1 2 3 27 27 H 1.08999 * 109.47336 * 30.03094 * 1 2 3 28 28 H 1.08999 * 109.46640 * 150.02648 * 1 2 3 29 29 H 1.09001 * 109.46948 * 89.97939 * 5 4 3 30 30 H 1.09004 * 109.46927 * 209.97187 * 5 4 3 31 31 H 1.08999 * 109.47380 * 329.96816 * 5 4 3 32 32 H 1.08999 * 109.46731 * 270.17645 * 7 6 4 33 33 H 1.08995 * 109.47145 * 30.17522 * 7 6 4 34 34 H 1.09001 * 109.46833 * 150.17513 * 7 6 4 35 35 H 1.09002 * 109.47152 * 149.71413 * 9 8 6 36 36 H 1.09001 * 109.46980 * 29.71513 * 9 8 6 37 37 H 0.96995 * 120.00011 * 0.02562 * 12 10 9 38 38 H 1.08992 * 109.47248 * 299.99512 * 16 13 12 39 39 H 1.09003 * 109.46929 * 60.00161 * 16 13 12 40 40 H 1.09001 * 109.47274 * 299.99906 * 17 16 13 41 41 H 1.09003 * 109.47480 * 60.00160 * 17 16 13 42 42 H 0.96995 * 119.99942 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6342 0.0006 5 6 4.7898 1.5009 0.0013 6 6 3.6142 -0.7153 0.0064 7 6 4.8351 -1.5988 0.0142 8 6 2.3271 -1.1330 0.0006 9 6 1.8600 -2.5657 0.0013 10 6 1.7049 -3.0442 -1.4193 11 8 1.9500 -2.2956 -2.3414 12 7 1.2947 -4.3044 -1.6649 13 16 1.1249 -4.8303 -3.2260 14 8 0.6620 -6.1676 -3.0968 15 8 0.3232 -3.8343 -3.8462 16 6 2.8092 -4.8018 -3.8989 17 6 2.7849 -5.2733 -5.3542 18 6 4.1841 -5.2491 -5.9136 19 1 5.0083 -4.9297 -5.2929 20 6 4.4122 -5.6356 -7.2172 21 7 3.4086 -6.0250 -7.9729 22 14 6.1466 -5.6062 -7.9103 23 1 7.0892 -5.1319 -6.8654 24 1 6.5312 -6.9745 -8.3403 25 1 6.1982 -4.6880 -9.0763 26 1 -0.3634 0.0004 1.0276 27 1 -0.3634 0.8897 -0.5143 28 1 -0.3632 -0.8902 -0.5134 29 1 5.0820 1.7160 1.0292 30 1 5.6097 0.9982 -0.5118 31 1 4.5567 2.4333 -0.5130 32 1 5.1346 -1.8136 -1.0116 33 1 5.6485 -1.0899 0.5312 34 1 4.6050 -2.5318 0.5286 35 1 0.9009 -2.6350 0.5148 36 1 2.5932 -3.1867 0.5159 37 1 1.0990 -4.9031 -0.9274 38 1 3.2020 -3.7862 -3.8523 39 1 3.4458 -5.4649 -3.3131 40 1 2.3923 -6.2891 -5.4006 41 1 2.1482 -4.6106 -5.9404 42 1 3.5691 -6.2966 -8.8901 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776116018.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:35 Heat of formation + Delta-G solvation = -48.141128 kcal Electronic energy + Delta-G solvation = -26353.421654 eV Core-core repulsion = 22462.258751 eV Total energy + Delta-G solvation = -3891.162903 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.60548 -39.76703 -36.66530 -35.57687 -34.47837 -34.34697 -33.88358 -33.18765 -31.17623 -30.03959 -29.45582 -26.52193 -25.62753 -25.12042 -22.07356 -21.56488 -19.82562 -19.67240 -19.20620 -17.82963 -17.45840 -16.66630 -16.38770 -15.86724 -15.81140 -15.11866 -15.04535 -14.58648 -14.40607 -14.07504 -14.02058 -13.59941 -13.44313 -13.38973 -13.13974 -12.87052 -12.55255 -12.49847 -12.23370 -12.15760 -12.07833 -11.87874 -11.77903 -11.69100 -11.57674 -11.09644 -10.98643 -10.78492 -10.59460 -10.41185 -10.34493 -10.16935 -9.70378 -9.16299 -9.14669 -8.50178 -8.43197 -6.12141 -4.17471 0.54260 1.71790 2.20435 2.34839 2.50481 2.90030 3.25583 3.32589 3.35935 4.07690 4.25138 4.37108 4.40752 4.42170 4.69155 4.72602 4.82408 4.88843 4.93273 4.98495 5.07125 5.15352 5.22993 5.23281 5.27732 5.39793 5.49489 5.59676 5.61547 5.74185 5.79295 5.86647 6.02312 6.47064 6.54955 6.73676 6.88804 7.29403 7.36178 7.60644 7.63299 7.80939 8.17111 8.85588 9.46989 10.99073 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.012493 B = 0.003578 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.739523 B = 7823.643913 C = 9328.770784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.094 3.906 3 N -0.299 5.299 4 N -0.374 5.374 5 C 0.102 3.898 6 C 0.105 3.895 7 C -0.099 4.099 8 C -0.230 4.230 9 C -0.059 4.059 10 C 0.527 3.473 11 O -0.478 6.478 12 N -1.061 6.061 13 S 2.565 3.435 14 O -0.957 6.957 15 O -0.939 6.939 16 C -0.576 4.576 17 C 0.029 3.971 18 C -0.518 4.518 19 H 0.062 0.938 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.900 3.100 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.428 0.572 38 H 0.130 0.870 39 H 0.120 0.880 40 H 0.034 0.966 41 H 0.036 0.964 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.800 9.041 22.811 24.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.072 4.072 3 N -0.121 5.121 4 N -0.155 5.155 5 C -0.039 4.039 6 C -0.023 4.023 7 C -0.157 4.157 8 C -0.242 4.242 9 C -0.101 4.101 10 C 0.313 3.687 11 O -0.348 6.348 12 N -0.823 5.823 13 S 2.665 3.335 14 O -0.947 6.947 15 O -0.929 6.929 16 C -0.710 4.710 17 C -0.010 4.010 18 C -0.557 4.557 19 H 0.080 0.920 20 C -0.145 4.145 21 N -0.528 5.528 22 Si 0.728 3.272 23 H -0.197 1.197 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.105 0.895 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.262 0.738 38 H 0.148 0.852 39 H 0.139 0.861 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.252 10.726 21.586 24.105 hybrid contribution 1.510 -1.045 -0.014 1.837 sum 1.762 9.681 21.572 23.710 Atomic orbital electron populations 1.20207 0.86772 1.03826 1.02648 1.22120 0.96756 0.90103 0.98243 1.77307 0.86083 1.22399 1.26266 1.48220 1.05610 1.04036 1.57682 1.21820 0.83952 0.95083 1.03049 1.20786 0.96713 0.84697 1.00118 1.20542 0.92909 0.98170 1.04059 1.18942 0.91477 0.94376 1.19393 1.19998 1.04211 0.93018 0.92917 1.20808 0.74477 0.80086 0.93334 1.90913 1.44851 1.53022 1.46009 1.55441 1.75201 1.21229 1.30464 1.06667 0.79826 0.73929 0.73030 1.93585 1.80360 1.36532 1.84254 1.93597 1.66149 1.59616 1.73529 1.30330 1.18053 1.10998 1.11650 1.18993 1.00287 0.97334 0.84422 1.21008 0.92151 1.45429 0.97142 0.91969 1.25064 0.97520 0.94963 0.96931 1.69964 1.30769 1.43869 1.08209 0.86404 0.83978 0.77781 0.79058 1.19667 1.20779 1.20783 0.90479 0.90668 0.90421 0.90931 0.89472 0.89220 0.89468 0.90996 0.89537 0.87346 0.87540 0.73763 0.85179 0.86117 0.94759 0.94617 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.12 36.00 0.36 -0.40 16 2 C 0.09 1.22 7.22 -82.41 -0.59 0.63 16 3 N -0.30 -4.19 12.58 33.67 0.42 -3.77 16 4 N -0.37 -4.41 4.01 -63.88 -0.26 -4.67 16 5 C 0.10 0.75 11.09 59.85 0.66 1.42 16 6 C 0.10 1.17 6.93 -82.26 -0.57 0.60 16 7 C -0.10 -0.75 9.68 36.01 0.35 -0.40 16 8 C -0.23 -2.72 4.59 -105.05 -0.48 -3.20 16 9 C -0.06 -0.52 5.64 -29.03 -0.16 -0.69 16 10 C 0.53 6.94 7.56 -10.98 -0.08 6.86 16 11 O -0.48 -8.60 14.14 -11.57 -0.16 -8.77 16 12 N -1.06 -13.00 5.60 31.22 0.17 -12.83 16 13 S 2.57 46.73 5.11 -107.50 -0.55 46.18 16 14 O -0.96 -18.90 18.08 -57.54 -1.04 -19.94 16 15 O -0.94 -20.86 17.04 -64.79 -1.10 -21.97 16 16 C -0.58 -11.43 5.82 37.16 0.22 -11.21 16 17 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 18 C -0.52 -14.46 9.11 -34.44 -0.31 -14.78 16 19 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.64 13.29 55.43 0.74 -25.91 16 22 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.77 7.92 -51.93 -0.41 0.35 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.48 7.67 -51.93 -0.40 0.08 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.40 7.74 -51.93 -0.40 -0.01 16 34 H 0.09 0.49 7.14 -51.93 -0.37 0.12 16 35 H 0.11 0.68 7.92 -51.93 -0.41 0.27 16 36 H 0.11 0.59 7.14 -51.93 -0.37 0.22 16 37 H 0.43 3.26 8.79 -34.48 -0.30 2.95 16 38 H 0.13 2.56 7.19 -51.93 -0.37 2.18 16 39 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 40 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 371.60 15.07 5.60 5.60 Total: -1.00 -40.83 371.60 -8.01 -48.84 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.96 Total: -0.06 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: -0.85 Total: -19.02 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 1.08 Total: -47.17 kcal Atomic # 8 Polarization: -48.37 SS G_CDS: -2.31 Total: -50.68 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 46.73 SS G_CDS: -0.55 Total: 46.18 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -40.83 -8.01 -48.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776116018.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.703 kcal (2) G-P(sol) polarization free energy of solvation -40.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds