Wall clock time and date at job start Tue Mar 31 2020 06:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35323 * 126.12909 * 2 1 4 4 C 1.50696 * 126.03533 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.46969 * 85.00715 * 4 3 2 6 6 C 1.50706 * 109.47348 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99503 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00081 * 179.72561 * 6 5 4 9 9 S 1.65598 * 119.99646 * 180.02562 * 8 6 5 10 10 O 1.42105 * 104.27668 * 181.06887 * 9 8 6 11 11 O 1.42094 * 104.28158 * 308.92572 * 9 8 6 12 12 C 1.81404 * 104.45244 * 64.99884 * 9 8 6 13 13 C 1.53001 * 109.47377 * 179.97438 * 12 9 8 14 14 C 1.50691 * 109.47020 * 179.97438 * 13 12 9 15 15 H 1.08001 * 120.00413 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00152 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99411 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00422 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47160 * 90.00149 * 18 16 14 20 20 H 1.48497 * 109.46955 * 210.00132 * 18 16 14 21 21 H 1.48502 * 109.46772 * 330.00052 * 18 16 14 22 22 C 1.39868 * 107.91820 * 180.28350 * 3 2 1 23 23 N 1.30831 * 108.20521 * 359.54719 * 22 3 2 24 24 N 1.34949 * 126.12799 * 180.02562 * 2 1 3 25 25 C 1.46499 * 126.03683 * 359.95868 * 24 2 1 26 26 H 1.09005 * 109.46901 * 90.00483 * 1 2 3 27 27 H 1.09001 * 109.47623 * 210.00640 * 1 2 3 28 28 H 1.09007 * 109.47556 * 330.00515 * 1 2 3 29 29 H 1.09000 * 109.47664 * 325.00644 * 4 3 2 30 30 H 1.09002 * 109.46824 * 205.00114 * 4 3 2 31 31 H 1.09001 * 109.47671 * 59.99812 * 5 4 3 32 32 H 1.08998 * 109.47454 * 299.99809 * 5 4 3 33 33 H 0.96998 * 120.00525 * 359.97438 * 8 6 5 34 34 H 1.09001 * 109.46803 * 300.00163 * 12 9 8 35 35 H 1.09002 * 109.46971 * 59.99627 * 12 9 8 36 36 H 1.08998 * 109.47137 * 300.00034 * 13 12 9 37 37 H 1.08999 * 109.46549 * 60.00116 * 13 12 9 38 38 H 0.97004 * 119.99509 * 179.97438 * 17 16 14 39 39 H 1.08007 * 125.89180 * 179.73636 * 22 3 2 40 40 H 1.08997 * 109.47203 * 90.00059 * 25 24 2 41 41 H 1.08994 * 109.47671 * 209.99998 * 25 24 2 42 42 H 1.09003 * 109.47217 * 330.00554 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 1.8432 2.5275 0.0005 5 6 1.5681 2.9741 1.4378 6 6 1.1071 4.4090 1.4385 7 8 1.0088 5.0148 0.3924 8 7 0.7992 5.0173 2.6010 9 16 0.2921 6.5937 2.6016 10 8 0.0893 6.8961 3.9752 11 8 1.2755 7.2786 1.8381 12 6 -1.2912 6.5603 1.7169 13 6 -1.8684 7.9757 1.6505 14 6 -3.1834 7.9479 0.9150 15 1 -3.5691 7.0141 0.5334 16 6 -3.8941 9.1146 0.7291 17 7 -3.4241 10.2519 1.1934 18 14 -5.5245 9.0802 -0.1820 19 1 -6.6278 8.8548 0.7859 20 1 -5.7315 10.3769 -0.8754 21 1 -5.5101 7.9814 -1.1810 22 6 3.6334 0.6559 -0.0066 23 7 3.6333 -0.6524 -0.0006 24 7 2.3026 -1.0900 -0.0005 25 6 1.8539 -2.4846 -0.0003 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3634 0.8901 0.5138 29 1 0.9303 2.6158 -0.5884 30 1 2.6184 3.1587 -0.4339 31 1 2.4809 2.8860 2.0269 32 1 0.7929 2.3430 1.8723 33 1 0.8740 4.5316 3.4373 34 1 -1.1347 6.1835 0.7061 35 1 -1.9881 5.9084 2.2437 36 1 -2.0250 8.3519 2.6614 37 1 -1.1717 8.6278 1.1239 38 1 -3.9240 11.0728 1.0623 39 1 4.5083 1.2892 -0.0123 40 1 1.7420 -2.8304 -1.0278 41 1 2.5900 -3.1031 0.5131 42 1 0.8956 -2.5579 0.5141 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776119084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:45 Heat of formation + Delta-G solvation = -51.270770 kcal Electronic energy + Delta-G solvation = -25466.637641 eV Core-core repulsion = 21575.339027 eV Total energy + Delta-G solvation = -3891.298615 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.64158 -40.04032 -36.68250 -35.59167 -34.71807 -34.40317 -33.88368 -33.58159 -31.25666 -31.15320 -27.67722 -27.03066 -25.62138 -24.38515 -21.74000 -21.39464 -20.99920 -19.60769 -19.25523 -17.87908 -17.50173 -16.71793 -16.52466 -16.03764 -16.00334 -15.32181 -15.08239 -14.72229 -14.56924 -14.46457 -14.16543 -13.60356 -13.56041 -13.41446 -12.95299 -12.90636 -12.73520 -12.55078 -12.52140 -12.17683 -12.06034 -11.78836 -11.70166 -11.59046 -11.35902 -11.07998 -10.98938 -10.82933 -10.72917 -10.41733 -10.34972 -10.18317 -9.70055 -9.56059 -9.17103 -8.56570 -8.49315 -6.11578 -4.16948 0.53224 1.53993 2.13776 2.18613 2.46602 2.80933 3.27016 3.33273 3.36443 4.02655 4.14881 4.28264 4.31154 4.37882 4.64116 4.65450 4.69836 4.79477 4.82348 4.87745 4.97746 4.99779 5.12437 5.23756 5.26679 5.30091 5.43148 5.48610 5.61209 5.71390 5.74127 5.97817 6.04694 6.38821 6.47143 6.67700 6.70491 7.29587 7.36389 7.41755 7.51897 7.81419 8.17571 8.85984 9.47472 10.99546 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.015767 B = 0.002592 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.449379 B =10799.463089 C =12016.675582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.088 3.912 3 C -0.237 4.237 4 C -0.029 4.029 5 C -0.137 4.137 6 C 0.531 3.469 7 O -0.489 6.489 8 N -1.061 6.061 9 S 2.566 3.434 10 O -0.957 6.957 11 O -0.939 6.939 12 C -0.575 4.575 13 C 0.029 3.971 14 C -0.518 4.518 15 H 0.062 0.938 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.901 3.099 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.057 3.943 23 N -0.301 5.301 24 N -0.376 5.376 25 C 0.101 3.899 26 H 0.083 0.917 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.428 0.572 34 H 0.131 0.869 35 H 0.120 0.880 36 H 0.034 0.966 37 H 0.036 0.964 38 H 0.265 0.735 39 H 0.184 0.816 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.298 -25.623 0.676 27.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.040 4.040 3 C -0.249 4.249 4 C -0.068 4.068 5 C -0.178 4.178 6 C 0.317 3.683 7 O -0.360 6.360 8 N -0.822 5.822 9 S 2.666 3.334 10 O -0.947 6.947 11 O -0.929 6.929 12 C -0.710 4.710 13 C -0.010 4.010 14 C -0.558 4.558 15 H 0.080 0.920 16 C -0.145 4.145 17 N -0.528 5.528 18 Si 0.728 3.272 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.129 4.129 23 N -0.122 5.122 24 N -0.159 5.159 25 C -0.041 4.041 26 H 0.101 0.899 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.120 0.880 32 H 0.118 0.882 33 H 0.263 0.737 34 H 0.150 0.850 35 H 0.139 0.861 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.201 0.799 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.416 -25.522 0.311 27.568 hybrid contribution -1.708 0.049 -0.201 1.720 sum 8.708 -25.473 0.110 26.921 Atomic orbital electron populations 1.20519 0.87217 1.03960 1.03730 1.20917 0.94550 0.87076 1.01433 1.19793 0.92386 0.95264 1.17424 1.19663 1.02850 0.90052 0.94263 1.21840 1.03782 0.91466 1.00759 1.20776 0.74960 0.90140 0.82424 1.90915 1.48668 1.66136 1.30273 1.55444 1.74927 1.36073 1.15762 1.06678 0.78842 0.72393 0.75511 1.93587 1.87494 1.81030 1.32611 1.93595 1.57037 1.69685 1.72572 1.30335 1.16284 1.11089 1.13294 1.18985 0.97647 0.85151 0.99209 1.20973 1.03984 0.94269 1.36578 0.91982 1.25072 0.98358 0.95393 0.95699 1.69959 1.38797 0.98672 1.45409 0.86446 0.83292 0.77612 0.79802 1.20499 1.20996 1.19717 1.23822 0.97804 0.91960 0.99334 1.77375 0.96507 1.13084 1.25189 1.48402 1.04003 1.05931 1.57571 1.21825 1.00992 0.77927 1.03341 0.89881 0.91142 0.89287 0.90206 0.89834 0.87966 0.88218 0.73725 0.85045 0.86137 0.94801 0.94573 0.92518 0.79944 0.90799 0.89332 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.50 9.80 36.00 0.35 -0.15 16 2 C 0.09 0.71 6.93 -82.26 -0.57 0.14 16 3 C -0.24 -2.13 5.35 -105.05 -0.56 -2.69 16 4 C -0.03 -0.26 4.54 -27.89 -0.13 -0.39 16 5 C -0.14 -1.08 5.68 -27.88 -0.16 -1.24 16 6 C 0.53 6.51 7.57 -10.98 -0.08 6.42 16 7 O -0.49 -8.06 14.08 -11.51 -0.16 -8.22 16 8 N -1.06 -12.72 5.60 31.22 0.17 -12.55 16 9 S 2.57 45.85 5.11 -107.50 -0.55 45.30 16 10 O -0.96 -18.78 18.08 -57.54 -1.04 -19.82 16 11 O -0.94 -20.43 17.04 -64.77 -1.10 -21.54 16 12 C -0.58 -11.22 5.82 37.16 0.22 -11.00 16 13 C 0.03 0.75 4.98 -27.89 -0.14 0.62 16 14 C -0.52 -14.40 9.11 -34.44 -0.31 -14.72 16 15 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 18 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 C 0.06 0.54 11.96 -17.37 -0.21 0.33 16 23 N -0.30 -3.24 12.58 30.62 0.39 -2.85 16 24 N -0.38 -3.26 4.01 -63.89 -0.26 -3.52 16 25 C 0.10 0.46 11.27 59.85 0.67 1.14 16 26 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.25 7.08 -51.93 -0.37 -0.12 16 28 H 0.09 0.43 7.51 -51.93 -0.39 0.04 16 29 H 0.08 0.74 7.97 -51.93 -0.41 0.33 16 30 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.55 7.77 -51.93 -0.40 0.15 16 33 H 0.43 3.32 8.79 -34.47 -0.30 3.02 16 34 H 0.13 2.51 7.18 -51.92 -0.37 2.14 16 35 H 0.12 2.00 8.14 -51.92 -0.42 1.58 16 36 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 39 H 0.18 1.29 8.06 -52.48 -0.42 0.87 16 40 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.09 0.20 7.05 -51.93 -0.37 -0.16 16 LS Contribution 371.68 15.07 5.60 5.60 Total: -1.00 -39.57 371.68 -8.21 -47.78 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -5.96 Total: -0.58 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -1.01 Total: -20.01 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 1.04 Total: -44.74 kcal Atomic # 8 Polarization: -47.27 SS G_CDS: -2.31 Total: -49.58 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 45.85 SS G_CDS: -0.55 Total: 45.30 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -39.57 -8.21 -47.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776119084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.495 kcal (2) G-P(sol) polarization free energy of solvation -39.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds