Wall clock time and date at job start Tue Mar 31 2020 06:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35323 * 126.12909 * 2 1 4 4 C 1.50696 * 126.03533 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.46969 * 85.00715 * 4 3 2 6 6 C 1.50706 * 109.47348 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99503 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00081 * 179.72561 * 6 5 4 9 9 S 1.65598 * 119.99646 * 180.02562 * 8 6 5 10 10 O 1.42105 * 104.27668 * 181.06887 * 9 8 6 11 11 O 1.42094 * 104.28158 * 308.92572 * 9 8 6 12 12 C 1.81404 * 104.45244 * 64.99884 * 9 8 6 13 13 C 1.53001 * 109.47377 * 179.97438 * 12 9 8 14 14 C 1.50691 * 109.47020 * 179.97438 * 13 12 9 15 15 H 1.08001 * 120.00413 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00152 * 180.02562 * 14 13 12 17 17 N 1.31519 * 119.99411 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00422 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47160 * 90.00149 * 18 16 14 20 20 H 1.48497 * 109.46955 * 210.00132 * 18 16 14 21 21 H 1.48502 * 109.46772 * 330.00052 * 18 16 14 22 22 C 1.39868 * 107.91820 * 180.28350 * 3 2 1 23 23 N 1.30831 * 108.20521 * 359.54719 * 22 3 2 24 24 N 1.34949 * 126.12799 * 180.02562 * 2 1 3 25 25 C 1.46499 * 126.03683 * 359.95868 * 24 2 1 26 26 H 1.09005 * 109.46901 * 90.00483 * 1 2 3 27 27 H 1.09001 * 109.47623 * 210.00640 * 1 2 3 28 28 H 1.09007 * 109.47556 * 330.00515 * 1 2 3 29 29 H 1.09000 * 109.47664 * 325.00644 * 4 3 2 30 30 H 1.09002 * 109.46824 * 205.00114 * 4 3 2 31 31 H 1.09001 * 109.47671 * 59.99812 * 5 4 3 32 32 H 1.08998 * 109.47454 * 299.99809 * 5 4 3 33 33 H 0.96998 * 120.00525 * 359.97438 * 8 6 5 34 34 H 1.09001 * 109.46803 * 300.00163 * 12 9 8 35 35 H 1.09002 * 109.46971 * 59.99627 * 12 9 8 36 36 H 1.08998 * 109.47137 * 300.00034 * 13 12 9 37 37 H 1.08999 * 109.46549 * 60.00116 * 13 12 9 38 38 H 0.97004 * 119.99509 * 179.97438 * 17 16 14 39 39 H 1.08007 * 125.89180 * 179.73636 * 22 3 2 40 40 H 1.08997 * 109.47203 * 90.00059 * 25 24 2 41 41 H 1.08994 * 109.47671 * 209.99998 * 25 24 2 42 42 H 1.09003 * 109.47217 * 330.00554 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 1.8432 2.5275 0.0005 5 6 1.5681 2.9741 1.4378 6 6 1.1071 4.4090 1.4385 7 8 1.0088 5.0148 0.3924 8 7 0.7992 5.0173 2.6010 9 16 0.2921 6.5937 2.6016 10 8 0.0893 6.8961 3.9752 11 8 1.2755 7.2786 1.8381 12 6 -1.2912 6.5603 1.7169 13 6 -1.8684 7.9757 1.6505 14 6 -3.1834 7.9479 0.9150 15 1 -3.5691 7.0141 0.5334 16 6 -3.8941 9.1146 0.7291 17 7 -3.4241 10.2519 1.1934 18 14 -5.5245 9.0802 -0.1820 19 1 -6.6278 8.8548 0.7859 20 1 -5.7315 10.3769 -0.8754 21 1 -5.5101 7.9814 -1.1810 22 6 3.6334 0.6559 -0.0066 23 7 3.6333 -0.6524 -0.0006 24 7 2.3026 -1.0900 -0.0005 25 6 1.8539 -2.4846 -0.0003 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3634 0.8901 0.5138 29 1 0.9303 2.6158 -0.5884 30 1 2.6184 3.1587 -0.4339 31 1 2.4809 2.8860 2.0269 32 1 0.7929 2.3430 1.8723 33 1 0.8740 4.5316 3.4373 34 1 -1.1347 6.1835 0.7061 35 1 -1.9881 5.9084 2.2437 36 1 -2.0250 8.3519 2.6614 37 1 -1.1717 8.6278 1.1239 38 1 -3.9240 11.0728 1.0623 39 1 4.5083 1.2892 -0.0123 40 1 1.7420 -2.8304 -1.0278 41 1 2.5900 -3.1031 0.5131 42 1 0.8956 -2.5579 0.5141 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776119084.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:40 Heat of formation + Delta-G solvation = -81.634768 kcal Electronic energy + Delta-G solvation = -25467.954323 eV Core-core repulsion = 21575.339027 eV Total energy + Delta-G solvation = -3892.615296 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 4.26 seconds Orbital eigenvalues (eV) -42.25158 -41.10332 -38.24711 -37.17824 -35.93231 -35.51723 -35.36720 -34.13614 -33.15200 -31.78721 -28.29257 -27.61632 -27.48442 -25.16131 -23.61689 -22.34902 -21.64260 -20.67502 -20.12300 -19.28201 -18.73994 -18.27908 -17.42189 -17.22754 -16.66971 -16.55298 -16.50899 -16.48296 -15.62472 -15.21948 -15.11741 -14.84832 -14.46956 -14.21745 -13.97566 -13.80574 -13.70287 -13.45505 -13.40701 -13.32550 -13.21189 -13.04757 -12.95269 -12.91833 -12.81731 -12.64698 -12.27736 -12.21385 -12.00692 -11.96230 -11.71400 -11.41053 -11.25535 -11.01640 -10.63957 -10.15510 -9.18832 -8.25778 -6.39695 -0.94216 0.94581 1.12598 1.41457 1.43951 1.49786 1.55156 1.71249 1.85489 2.38490 2.62816 3.07615 3.10431 3.37579 3.71536 3.84801 3.90421 4.06249 4.10245 4.17642 4.21774 4.34430 4.40545 4.46101 4.64966 4.67515 4.72708 4.73322 4.80095 4.85297 5.13510 5.16621 5.25182 5.26343 5.32768 5.40641 5.68138 5.76263 5.78357 6.05586 6.20042 6.55839 6.73256 6.79386 7.30191 8.86663 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.015767 B = 0.002592 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.449379 B =10799.463089 C =12016.675582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.090 3.910 3 C -0.252 4.252 4 C -0.025 4.025 5 C -0.124 4.124 6 C 0.531 3.469 7 O -0.532 6.532 8 N -1.037 6.037 9 S 2.598 3.402 10 O -0.975 6.975 11 O -0.982 6.982 12 C -0.577 4.577 13 C 0.022 3.978 14 C -0.538 4.538 15 H 0.076 0.924 16 C -0.005 4.005 17 N -0.934 5.934 18 Si 0.976 3.024 19 H -0.267 1.267 20 H -0.284 1.284 21 H -0.259 1.259 22 C 0.046 3.954 23 N -0.339 5.339 24 N -0.381 5.381 25 C 0.091 3.909 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.126 0.874 32 H 0.135 0.865 33 H 0.451 0.549 34 H 0.136 0.864 35 H 0.153 0.847 36 H 0.014 0.986 37 H 0.003 0.997 38 H 0.268 0.732 39 H 0.195 0.805 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.969 -28.534 0.942 29.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.038 4.038 3 C -0.263 4.263 4 C -0.064 4.064 5 C -0.166 4.166 6 C 0.320 3.680 7 O -0.406 6.406 8 N -0.805 5.805 9 S 2.697 3.303 10 O -0.965 6.965 11 O -0.972 6.972 12 C -0.710 4.710 13 C -0.017 4.017 14 C -0.577 4.577 15 H 0.094 0.906 16 C -0.203 4.203 17 N -0.573 5.573 18 Si 0.799 3.201 19 H -0.192 1.192 20 H -0.209 1.209 21 H -0.183 1.183 22 C -0.139 4.139 23 N -0.160 5.160 24 N -0.164 5.164 25 C -0.049 4.049 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.114 0.886 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.144 0.856 32 H 0.153 0.847 33 H 0.291 0.709 34 H 0.154 0.846 35 H 0.171 0.829 36 H 0.032 0.968 37 H 0.021 0.979 38 H 0.076 0.924 39 H 0.212 0.788 40 H 0.100 0.900 41 H 0.108 0.892 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 9.083 -28.465 0.609 29.885 hybrid contribution -1.229 0.843 -0.278 1.516 sum 7.854 -27.622 0.330 28.719 Atomic orbital electron populations 1.20653 0.85043 1.05384 1.04417 1.21383 0.95847 0.86696 0.99910 1.19809 0.92369 0.95371 1.18754 1.19567 1.02126 0.89983 0.94744 1.21933 1.05761 0.88090 1.00793 1.21660 0.73584 0.91465 0.81321 1.90914 1.50562 1.67255 1.31868 1.54874 1.74193 1.34086 1.17368 1.05376 0.77475 0.73329 0.74141 1.93557 1.87490 1.82320 1.33171 1.93543 1.58065 1.72054 1.73490 1.30223 1.18409 1.07656 1.14722 1.18826 0.97070 0.88467 0.97372 1.21484 1.04785 0.94955 1.36513 0.90612 1.26140 1.02638 0.94948 0.96604 1.70107 1.40706 0.99522 1.47014 0.85283 0.78251 0.77867 0.78681 1.19235 1.20939 1.18268 1.24132 0.98739 0.91954 0.99051 1.77313 0.98225 1.13748 1.26716 1.48733 1.03427 1.07330 1.56900 1.22142 1.02235 0.76185 1.04360 0.89488 0.89020 0.88575 0.90752 0.91280 0.85611 0.84706 0.70901 0.84607 0.82930 0.96786 0.97853 0.92367 0.78794 0.89981 0.89181 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 9.80 71.23 0.70 0.01 16 2 C 0.09 1.25 6.93 41.40 0.29 1.54 16 3 C -0.25 -4.08 5.35 -20.14 -0.11 -4.19 16 4 C -0.02 -0.40 4.54 29.85 0.14 -0.27 16 5 C -0.12 -1.57 5.68 29.85 0.17 -1.40 16 6 C 0.53 11.91 7.57 87.66 0.66 12.57 16 7 O -0.53 -17.21 14.08 13.28 0.19 -17.02 16 8 N -1.04 -22.55 5.60 -173.53 -0.97 -23.53 16 9 S 2.60 91.94 5.11 -56.49 -0.29 91.65 16 10 O -0.98 -37.73 18.08 -127.65 -2.31 -40.04 16 11 O -0.98 -43.55 17.04 -120.74 -2.06 -45.61 16 12 C -0.58 -22.33 5.82 71.98 0.42 -21.91 16 13 C 0.02 1.15 4.98 29.85 0.15 1.30 16 14 C -0.54 -30.12 9.11 25.60 0.23 -29.89 16 15 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 16 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 17 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 18 Si 0.98 43.43 29.54 68.60 2.03 45.45 16 19 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 22 C 0.05 0.83 11.96 85.24 1.02 1.85 16 23 N -0.34 -7.00 12.58 -57.02 -0.72 -7.72 16 24 N -0.38 -5.90 4.01 -356.04 -1.43 -7.33 16 25 C 0.09 0.63 11.27 127.77 1.44 2.07 16 26 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.09 0.26 7.08 -2.39 -0.02 0.25 16 28 H 0.10 0.57 7.51 -2.38 -0.02 0.55 16 29 H 0.07 1.27 7.97 -2.39 -0.02 1.25 16 30 H 0.07 1.30 8.10 -2.39 -0.02 1.28 16 31 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.14 0.84 7.77 -2.39 -0.02 0.82 16 33 H 0.45 5.48 8.79 -96.75 -0.85 4.63 16 34 H 0.14 5.14 7.18 -2.39 -0.02 5.13 16 35 H 0.15 4.79 8.14 -2.39 -0.02 4.77 16 36 H 0.01 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 39 H 0.20 2.66 8.06 -2.91 -0.02 2.64 16 40 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.11 0.15 7.05 -2.39 -0.02 0.14 16 Total: -1.00 -88.73 371.68 0.49 -88.25 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.19 Total: 10.90 kcal Atomic # 6 Polarization: -43.69 SS G_CDS: 5.57 Total: -38.13 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -2.83 Total: -95.46 kcal Atomic # 8 Polarization: -98.49 SS G_CDS: -4.18 Total: -102.67 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 91.94 SS G_CDS: -0.29 Total: 91.65 kcal Total: -88.73 0.49 -88.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776119084.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.612 kcal (2) G-P(sol) polarization free energy of solvation -88.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.26 seconds