Wall clock time and date at job start Tue Mar 31 2020 05:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86803 * 119.99877 * 2 1 4 4 H 1.48495 * 109.47432 * 89.99547 * 3 2 1 5 5 H 1.48498 * 109.46929 * 210.00063 * 3 2 1 6 6 H 1.48504 * 109.46998 * 329.99680 * 3 2 1 7 7 C 1.39938 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99969 * 17.10260 * 7 2 1 9 9 C 1.41393 * 120.00244 * 197.10039 * 7 2 1 10 10 C 1.40730 * 120.24523 * 29.34807 * 9 7 2 11 11 C 1.37598 * 119.75045 * 180.02562 * 10 9 7 12 12 C 1.38655 * 120.24576 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.50174 * 359.97438 * 12 11 10 14 14 C 1.37640 * 120.24862 * 359.67182 * 13 12 11 15 15 C 1.50700 * 120.13180 * 180.32332 * 14 13 12 16 16 C 1.50701 * 109.46813 * 265.30632 * 15 14 13 17 17 O 1.21280 * 120.00223 * 359.97438 * 16 15 14 18 18 N 1.34784 * 119.99906 * 180.02562 * 16 15 14 19 19 C 1.46501 * 119.99968 * 180.02562 * 18 16 15 20 20 C 1.50700 * 109.46875 * 179.97438 * 19 18 16 21 21 C 1.35318 * 126.66754 * 89.70989 * 20 19 18 22 22 C 1.42267 * 103.91806 * 179.90865 * 21 20 19 23 23 C 1.48337 * 126.93379 * 180.12967 * 22 21 20 24 24 N 1.34778 * 120.00081 * 180.25028 * 23 22 21 25 25 O 1.21494 * 119.99995 * 0.24395 * 23 22 21 26 26 N 1.30979 * 106.12933 * 0.35331 * 22 21 20 27 27 O 1.20907 * 111.43809 * 359.77416 * 26 22 21 28 28 H 0.97004 * 119.99819 * 175.46146 * 1 2 3 29 29 H 1.08003 * 120.12932 * 359.97438 * 10 9 7 30 30 H 1.08002 * 119.87930 * 180.02562 * 11 10 9 31 31 H 1.08001 * 119.75352 * 179.97438 * 12 11 10 32 32 H 1.08005 * 119.87936 * 179.97438 * 13 12 11 33 33 H 1.08999 * 109.46812 * 25.30470 * 15 14 13 34 34 H 1.08998 * 109.47079 * 145.30506 * 15 14 13 35 35 H 0.96998 * 119.99931 * 359.97438 * 18 16 15 36 36 H 1.08998 * 109.46479 * 299.99728 * 19 18 16 37 37 H 1.09002 * 109.47252 * 59.99451 * 19 18 16 38 38 H 1.07997 * 128.03382 * 0.02562 * 21 20 19 39 39 H 0.97010 * 119.99872 * 359.97438 * 24 23 22 40 40 H 0.96994 * 120.00484 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0466 1.4000 5 1 3.5397 1.4402 -0.7000 6 1 1.4396 2.6527 -0.7001 7 6 2.0080 -1.2119 0.0005 8 1 1.5038 -2.1266 -0.2741 9 6 3.3750 -1.2388 0.3606 10 6 3.8884 -0.2916 1.2660 11 6 5.2205 -0.3268 1.6089 12 6 6.0563 -1.2905 1.0655 13 6 5.5616 -2.2284 0.1728 14 6 4.2309 -2.2166 -0.1789 15 6 3.6944 -3.2420 -1.1441 16 6 3.7033 -2.6718 -2.5390 17 8 4.1053 -1.5437 -2.7305 18 7 3.2636 -3.4153 -3.5738 19 6 3.2728 -2.8612 -4.9299 20 6 2.7362 -3.8866 -5.8951 21 6 1.4437 -4.0558 -6.2584 22 6 1.4860 -5.1400 -7.1785 23 6 0.3374 -5.7464 -7.8950 24 7 0.5378 -6.7794 -8.7373 25 8 -0.7840 -5.3121 -7.7224 26 7 2.7433 -5.4978 -7.2617 27 8 3.4456 -4.8118 -6.5560 28 1 -0.4850 -0.8375 -0.0665 29 1 3.2394 0.4608 1.6895 30 1 5.6165 0.3989 2.3039 31 1 7.1007 -1.3106 1.3399 32 1 6.2217 -2.9744 -0.2447 33 1 4.3205 -4.1337 -1.1120 34 1 2.6739 -3.5044 -0.8653 35 1 2.9418 -4.3174 -3.4206 36 1 2.6474 -1.9690 -4.9620 37 1 4.2936 -2.5995 -5.2086 38 1 0.5810 -3.4964 -5.9281 39 1 1.4333 -7.1260 -8.8753 40 1 -0.2133 -7.1762 -9.2055 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777415541.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:43 Heat of formation + Delta-G solvation = 3.474503 kcal Electronic energy + Delta-G solvation = -26636.601647 eV Core-core repulsion = 22612.233014 eV Total energy + Delta-G solvation = -4024.368633 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.49845 -39.76362 -39.39944 -37.67183 -35.26990 -34.61642 -33.83433 -33.65674 -32.29202 -31.65198 -30.14926 -27.88426 -26.05735 -25.36323 -24.43083 -23.10651 -21.43783 -20.63388 -20.59952 -19.47699 -18.48383 -18.16677 -18.06942 -17.36317 -17.11265 -16.30894 -15.90273 -15.33289 -15.21052 -15.08651 -14.75331 -14.40108 -14.15581 -14.03473 -13.65569 -13.41797 -13.16151 -12.71207 -12.47939 -12.12416 -11.96279 -11.89630 -11.27209 -11.23647 -10.91777 -10.91351 -10.77930 -10.30485 -10.28487 -10.15807 -10.14392 -9.69362 -9.28450 -9.26162 -8.97486 -8.94742 -7.65031 -7.58765 -7.16967 -4.49373 0.61882 1.18585 2.42180 2.59785 2.70740 2.74193 2.76372 3.19975 3.27883 3.44253 3.54724 3.58816 3.67965 4.10877 4.13193 4.54535 4.61921 4.77307 4.81882 5.24984 5.37909 5.42869 5.53331 5.63059 5.80351 5.90491 6.07627 6.17555 6.20116 6.22001 6.47449 6.54846 6.67261 6.75628 7.07045 7.36105 7.50017 7.51794 7.66320 7.66693 7.69789 7.76127 7.86299 8.01927 8.41189 8.61311 8.68858 8.81849 10.08840 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.016315 B = 0.002841 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.776386 B = 9852.068572 C =10943.852662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.047 3.953 3 Si 1.070 2.930 4 H -0.280 1.280 5 H -0.257 1.257 6 H -0.293 1.293 7 C -0.513 4.513 8 H 0.075 0.925 9 C 0.115 3.885 10 C -0.244 4.244 11 C -0.075 4.075 12 C -0.246 4.246 13 C -0.067 4.067 14 C -0.174 4.174 15 C -0.068 4.068 16 C 0.523 3.477 17 O -0.510 6.510 18 N -0.745 5.745 19 C 0.203 3.797 20 C -0.038 4.038 21 C -0.159 4.159 22 C -0.034 4.034 23 C 0.607 3.393 24 N -0.839 5.839 25 O -0.519 6.519 26 N -0.329 5.329 27 O 0.132 5.868 28 H 0.283 0.717 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.399 0.601 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.187 0.813 39 H 0.408 0.592 40 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.921 -11.855 -13.592 18.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.172 4.172 3 Si 0.897 3.103 4 H -0.207 1.207 5 H -0.182 1.182 6 H -0.221 1.221 7 C -0.542 4.542 8 H 0.093 0.907 9 C 0.112 3.888 10 C -0.263 4.263 11 C -0.094 4.094 12 C -0.265 4.265 13 C -0.085 4.085 14 C -0.176 4.176 15 C -0.108 4.108 16 C 0.310 3.690 17 O -0.383 6.383 18 N -0.402 5.402 19 C 0.078 3.922 20 C -0.101 4.101 21 C -0.182 4.182 22 C -0.193 4.193 23 C 0.389 3.611 24 N -0.403 5.403 25 O -0.392 6.392 26 N -0.028 5.028 27 O 0.054 5.946 28 H 0.094 0.906 29 H 0.122 0.878 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.233 0.767 36 H 0.124 0.876 37 H 0.111 0.889 38 H 0.204 0.796 39 H 0.238 0.762 40 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 3.827 -9.965 -14.192 17.758 hybrid contribution -0.578 -2.132 -0.023 2.209 sum 3.249 -12.097 -14.215 18.946 Atomic orbital electron populations 1.70573 1.08027 1.32747 1.33135 1.27155 0.95535 1.04422 0.90075 0.83645 0.76099 0.73058 0.77522 1.20675 1.18163 1.22059 1.20522 0.94809 0.96353 1.42504 0.90723 1.17509 0.92870 0.89888 0.88493 1.21132 0.95663 1.04868 1.04655 1.20614 0.93883 0.96881 0.97975 1.20333 0.98093 1.01370 1.06718 1.20426 0.94059 0.97308 0.96703 1.18995 0.93328 1.02298 1.02991 1.20254 1.03049 0.97749 0.89766 1.21102 0.75911 0.85722 0.86245 1.90710 1.44608 1.18180 1.84787 1.46156 1.69266 1.18999 1.05735 1.19610 1.03051 0.90853 0.78669 1.24550 0.90848 0.95229 0.99484 1.22615 0.98265 0.98732 0.98599 1.23409 0.92481 1.00208 1.03169 1.16835 0.86105 0.79632 0.78507 1.43622 1.14376 1.35442 1.46893 1.90888 1.22833 1.61782 1.63729 1.74149 1.03609 1.14090 1.10925 1.84800 1.34400 1.33714 1.41694 0.90568 0.87786 0.88881 0.88993 0.89140 0.90265 0.88744 0.76709 0.87614 0.88885 0.79581 0.76237 0.75705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.14 13.65 55.55 0.76 -21.39 16 2 C 0.05 1.24 5.42 -17.34 -0.09 1.15 16 3 Si 1.07 25.53 24.89 -169.99 -4.23 21.30 16 4 H -0.28 -6.29 6.44 56.52 0.36 -5.93 16 5 H -0.26 -6.36 7.02 56.52 0.40 -5.97 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.51 -13.38 8.80 -37.75 -0.33 -13.71 16 8 H 0.07 1.94 6.60 -52.49 -0.35 1.59 16 9 C 0.12 2.90 5.13 -106.82 -0.55 2.35 16 10 C -0.24 -5.98 7.26 -38.87 -0.28 -6.26 16 11 C -0.08 -1.66 10.02 -39.66 -0.40 -2.06 16 12 C -0.25 -5.18 10.05 -39.29 -0.39 -5.58 16 13 C -0.07 -1.40 9.66 -39.66 -0.38 -1.78 16 14 C -0.17 -3.89 4.43 -103.91 -0.46 -4.35 16 15 C -0.07 -1.23 5.36 -29.03 -0.16 -1.38 16 16 C 0.52 9.34 7.82 -10.98 -0.09 9.26 16 17 O -0.51 -11.41 16.03 5.56 0.09 -11.32 16 18 N -0.74 -9.61 5.55 -61.47 -0.34 -9.95 16 19 C 0.20 2.26 6.23 -5.19 -0.03 2.23 16 20 C -0.04 -0.38 6.84 -35.35 -0.24 -0.62 16 21 C -0.16 -1.66 10.92 -39.08 -0.43 -2.09 16 22 C -0.03 -0.36 7.19 -82.53 -0.59 -0.96 16 23 C 0.61 6.43 8.12 -12.10 -0.10 6.33 16 24 N -0.84 -5.36 8.87 30.64 0.27 -5.08 16 25 O -0.52 -7.30 17.79 5.37 0.10 -7.21 16 26 N -0.33 -3.35 11.84 33.29 0.39 -2.96 16 27 O 0.13 1.33 11.18 17.24 0.19 1.52 16 28 H 0.28 7.37 8.73 -40.82 -0.36 7.01 16 29 H 0.10 2.54 4.43 -52.48 -0.23 2.31 16 30 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 32 H 0.09 1.63 8.06 -52.48 -0.42 1.21 16 33 H 0.08 1.14 8.05 -51.93 -0.42 0.72 16 34 H 0.09 1.69 6.51 -51.93 -0.34 1.35 16 35 H 0.40 4.13 8.46 -40.82 -0.35 3.78 16 36 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.19 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.41 1.91 8.59 -40.82 -0.35 1.56 16 40 H 0.41 1.84 8.93 -40.82 -0.36 1.47 16 LS Contribution 352.46 15.07 5.31 5.31 Total: -1.00 -32.99 352.46 -6.11 -39.10 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -4.13 Total: 8.15 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -4.53 Total: -17.48 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 1.08 Total: -39.37 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: 0.38 Total: -17.01 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -4.23 Total: 21.30 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.99 -6.11 -39.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777415541.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.574 kcal (2) G-P(sol) polarization free energy of solvation -32.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds