Wall clock time and date at job start Tue Mar 31 2020 05:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86803 * 119.99877 * 2 1 4 4 H 1.48495 * 109.47432 * 89.99547 * 3 2 1 5 5 H 1.48498 * 109.46929 * 210.00063 * 3 2 1 6 6 H 1.48504 * 109.46998 * 329.99680 * 3 2 1 7 7 C 1.39938 * 120.00241 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99969 * 17.10260 * 7 2 1 9 9 C 1.41393 * 120.00244 * 197.10039 * 7 2 1 10 10 C 1.40730 * 120.24523 * 29.34807 * 9 7 2 11 11 C 1.37598 * 119.75045 * 180.02562 * 10 9 7 12 12 C 1.38655 * 120.24576 * 0.02562 * 11 10 9 13 13 C 1.38613 * 120.50174 * 359.97438 * 12 11 10 14 14 C 1.37640 * 120.24862 * 359.67182 * 13 12 11 15 15 C 1.50700 * 120.13180 * 180.32332 * 14 13 12 16 16 C 1.50701 * 109.46813 * 265.30632 * 15 14 13 17 17 O 1.21280 * 120.00223 * 359.97438 * 16 15 14 18 18 N 1.34784 * 119.99906 * 180.02562 * 16 15 14 19 19 C 1.46501 * 119.99968 * 180.02562 * 18 16 15 20 20 C 1.50700 * 109.46875 * 179.97438 * 19 18 16 21 21 C 1.35318 * 126.66754 * 89.70989 * 20 19 18 22 22 C 1.42267 * 103.91806 * 179.90865 * 21 20 19 23 23 C 1.48337 * 126.93379 * 180.12967 * 22 21 20 24 24 N 1.34778 * 120.00081 * 180.25028 * 23 22 21 25 25 O 1.21494 * 119.99995 * 0.24395 * 23 22 21 26 26 N 1.30979 * 106.12933 * 0.35331 * 22 21 20 27 27 O 1.20907 * 111.43809 * 359.77416 * 26 22 21 28 28 H 0.97004 * 119.99819 * 175.46146 * 1 2 3 29 29 H 1.08003 * 120.12932 * 359.97438 * 10 9 7 30 30 H 1.08002 * 119.87930 * 180.02562 * 11 10 9 31 31 H 1.08001 * 119.75352 * 179.97438 * 12 11 10 32 32 H 1.08005 * 119.87936 * 179.97438 * 13 12 11 33 33 H 1.08999 * 109.46812 * 25.30470 * 15 14 13 34 34 H 1.08998 * 109.47079 * 145.30506 * 15 14 13 35 35 H 0.96998 * 119.99931 * 359.97438 * 18 16 15 36 36 H 1.08998 * 109.46479 * 299.99728 * 19 18 16 37 37 H 1.09002 * 109.47252 * 59.99451 * 19 18 16 38 38 H 1.07997 * 128.03382 * 0.02562 * 21 20 19 39 39 H 0.97010 * 119.99872 * 359.97438 * 24 23 22 40 40 H 0.96994 * 120.00484 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4896 2.0466 1.4000 5 1 3.5397 1.4402 -0.7000 6 1 1.4396 2.6527 -0.7001 7 6 2.0080 -1.2119 0.0005 8 1 1.5038 -2.1266 -0.2741 9 6 3.3750 -1.2388 0.3606 10 6 3.8884 -0.2916 1.2660 11 6 5.2205 -0.3268 1.6089 12 6 6.0563 -1.2905 1.0655 13 6 5.5616 -2.2284 0.1728 14 6 4.2309 -2.2166 -0.1789 15 6 3.6944 -3.2420 -1.1441 16 6 3.7033 -2.6718 -2.5390 17 8 4.1053 -1.5437 -2.7305 18 7 3.2636 -3.4153 -3.5738 19 6 3.2728 -2.8612 -4.9299 20 6 2.7362 -3.8866 -5.8951 21 6 1.4437 -4.0558 -6.2584 22 6 1.4860 -5.1400 -7.1785 23 6 0.3374 -5.7464 -7.8950 24 7 0.5378 -6.7794 -8.7373 25 8 -0.7840 -5.3121 -7.7224 26 7 2.7433 -5.4978 -7.2617 27 8 3.4456 -4.8118 -6.5560 28 1 -0.4850 -0.8375 -0.0665 29 1 3.2394 0.4608 1.6895 30 1 5.6165 0.3989 2.3039 31 1 7.1007 -1.3106 1.3399 32 1 6.2217 -2.9744 -0.2447 33 1 4.3205 -4.1337 -1.1120 34 1 2.6739 -3.5044 -0.8653 35 1 2.9418 -4.3174 -3.4206 36 1 2.6474 -1.9690 -4.9620 37 1 4.2936 -2.5995 -5.2086 38 1 0.5810 -3.4964 -5.9281 39 1 1.4333 -7.1260 -8.8753 40 1 -0.2133 -7.1762 -9.2055 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777415541.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:42 Heat of formation + Delta-G solvation = -22.104580 kcal Electronic energy + Delta-G solvation = -26637.710839 eV Core-core repulsion = 22612.233014 eV Total energy + Delta-G solvation = -4025.477825 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -46.33592 -40.83755 -40.60001 -39.32769 -36.41909 -35.55360 -35.44724 -34.62949 -33.66022 -32.87617 -31.95851 -29.22911 -27.34612 -26.30830 -26.08016 -23.95805 -23.19176 -22.11036 -21.44327 -20.96252 -19.98980 -19.34342 -19.01973 -18.21486 -17.95675 -17.56008 -17.27509 -16.74757 -16.58874 -16.04934 -15.95839 -15.76233 -15.58096 -15.39915 -14.94757 -14.74116 -14.54671 -14.22775 -13.84772 -13.71952 -13.58976 -13.04158 -12.89342 -12.70775 -12.54971 -12.10911 -11.90375 -11.81056 -11.76200 -11.54451 -11.18139 -11.09116 -10.97742 -10.82354 -10.61583 -10.15332 -9.51697 -9.29979 -9.10235 -6.44052 -0.21673 0.32911 0.86409 0.95334 1.36083 1.54537 1.57678 1.76893 1.81733 1.87637 1.98109 2.20029 2.41555 2.75289 2.78605 3.34501 3.56736 3.70711 3.91054 4.03475 4.09973 4.30651 4.34957 4.46939 4.50635 4.59083 4.62070 4.70638 4.75121 4.95671 5.02951 5.29877 5.34450 5.56209 5.58917 5.65953 5.87633 5.94519 6.02629 6.07906 6.23198 6.51207 6.56797 6.70740 6.79306 6.93000 6.96413 7.36737 8.11970 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.016315 B = 0.002841 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.776386 B = 9852.068572 C =10943.852662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.014 3.986 3 Si 1.097 2.903 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.288 1.288 7 C -0.531 4.531 8 H 0.061 0.939 9 C 0.085 3.915 10 C -0.267 4.267 11 C -0.089 4.089 12 C -0.233 4.233 13 C -0.078 4.078 14 C -0.176 4.176 15 C -0.071 4.071 16 C 0.525 3.475 17 O -0.562 6.562 18 N -0.726 5.726 19 C 0.205 3.795 20 C -0.025 4.025 21 C -0.165 4.165 22 C -0.041 4.041 23 C 0.605 3.395 24 N -0.814 5.814 25 O -0.561 6.561 26 N -0.322 5.322 27 O 0.137 5.863 28 H 0.277 0.723 29 H 0.096 0.904 30 H 0.122 0.878 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.090 0.910 35 H 0.414 0.586 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.188 0.812 39 H 0.419 0.581 40 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.531 -13.469 -14.181 20.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.199 4.199 3 Si 0.922 3.078 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.216 1.216 7 C -0.561 4.561 8 H 0.079 0.921 9 C 0.083 3.917 10 C -0.286 4.286 11 C -0.107 4.107 12 C -0.251 4.251 13 C -0.096 4.096 14 C -0.177 4.177 15 C -0.111 4.111 16 C 0.313 3.687 17 O -0.439 6.439 18 N -0.382 5.382 19 C 0.081 3.919 20 C -0.088 4.088 21 C -0.188 4.188 22 C -0.200 4.200 23 C 0.387 3.613 24 N -0.379 5.379 25 O -0.438 6.438 26 N -0.021 5.021 27 O 0.058 5.942 28 H 0.088 0.912 29 H 0.114 0.886 30 H 0.140 0.860 31 H 0.145 0.855 32 H 0.146 0.854 33 H 0.140 0.860 34 H 0.108 0.892 35 H 0.251 0.749 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.205 0.795 39 H 0.251 0.749 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 6.441 -11.665 -14.813 19.924 hybrid contribution -1.120 -1.822 0.119 2.143 sum 5.321 -13.487 -14.693 20.642 Atomic orbital electron populations 1.70617 1.08394 1.32325 1.36638 1.27818 0.95771 1.06281 0.89992 0.83255 0.74613 0.71684 0.78241 1.18812 1.19874 1.21593 1.20471 0.95712 0.95817 1.44138 0.92056 1.17798 0.93016 0.91484 0.89425 1.21298 0.96987 1.05010 1.05265 1.20994 0.93108 0.97996 0.98582 1.20893 0.99653 0.99801 1.04798 1.20908 0.93995 0.98163 0.96489 1.19505 0.93882 1.01733 1.02608 1.20319 1.03556 0.98154 0.89063 1.20981 0.75557 0.85150 0.87011 1.90694 1.47392 1.20237 1.85575 1.45880 1.67419 1.19181 1.05678 1.19599 1.03687 0.90875 0.77755 1.24161 0.90407 0.94999 0.99276 1.22723 0.98561 0.98831 0.98677 1.23483 0.92692 1.00408 1.03400 1.16907 0.85419 0.80155 0.78838 1.43474 1.15549 1.33753 1.45165 1.90872 1.24201 1.63345 1.65409 1.74146 1.03308 1.13866 1.10730 1.84799 1.34266 1.33577 1.41571 0.91222 0.88650 0.86046 0.85469 0.85444 0.86007 0.89158 0.74947 0.88196 0.87838 0.79517 0.74918 0.74365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.97 13.65 21.82 0.30 -47.67 16 2 C 0.01 0.79 5.42 85.26 0.46 1.25 16 3 Si 1.10 52.98 24.89 68.60 1.71 54.69 16 4 H -0.26 -11.69 6.44 99.48 0.64 -11.05 16 5 H -0.27 -13.75 7.02 99.48 0.70 -13.05 16 6 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 7 C -0.53 -28.59 8.80 23.46 0.21 -28.39 16 8 H 0.06 3.34 6.60 -2.91 -0.02 3.32 16 9 C 0.09 4.29 5.13 -21.29 -0.11 4.18 16 10 C -0.27 -12.95 7.26 22.73 0.16 -12.79 16 11 C -0.09 -3.71 10.02 22.22 0.22 -3.49 16 12 C -0.23 -8.91 10.05 22.46 0.23 -8.69 16 13 C -0.08 -2.98 9.66 22.22 0.21 -2.77 16 14 C -0.18 -7.56 4.43 -19.40 -0.09 -7.64 16 15 C -0.07 -2.43 5.36 29.10 0.16 -2.28 16 16 C 0.52 18.14 7.82 87.66 0.69 18.82 16 17 O -0.56 -24.95 16.03 -3.03 -0.05 -24.99 16 18 N -0.73 -17.52 5.55 -466.77 -2.59 -20.11 16 19 C 0.20 4.30 6.23 85.63 0.53 4.83 16 20 C -0.03 -0.46 6.84 25.01 0.17 -0.29 16 21 C -0.16 -3.30 10.92 22.60 0.25 -3.05 16 22 C -0.04 -0.83 7.19 42.96 0.31 -0.52 16 23 C 0.60 12.23 8.12 86.93 0.71 12.93 16 24 N -0.81 -9.00 8.87 -175.26 -1.55 -10.55 16 25 O -0.56 -15.75 17.79 -3.70 -0.07 -15.81 16 26 N -0.32 -5.93 11.84 -49.52 -0.59 -6.51 16 27 O 0.14 2.46 11.18 71.86 0.80 3.27 16 28 H 0.28 15.21 8.73 -92.71 -0.81 14.40 16 29 H 0.10 4.70 4.43 -2.91 -0.01 4.68 16 30 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 31 H 0.13 3.98 8.06 -2.91 -0.02 3.95 16 32 H 0.13 3.94 8.06 -2.91 -0.02 3.91 16 33 H 0.12 3.04 8.05 -2.39 -0.02 3.02 16 34 H 0.09 3.17 6.51 -2.39 -0.02 3.16 16 35 H 0.41 7.63 8.46 -92.71 -0.78 6.84 16 36 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.10 2.03 8.14 -2.39 -0.02 2.02 16 38 H 0.19 3.70 8.06 -2.91 -0.02 3.68 16 39 H 0.42 2.99 8.59 -92.70 -0.80 2.19 16 40 H 0.42 3.04 8.93 -92.71 -0.83 2.21 16 Total: -1.00 -73.21 352.46 0.70 -72.51 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: -1.37 Total: 23.08 kcal Atomic # 6 Polarization: -31.99 SS G_CDS: 4.11 Total: -27.88 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -4.43 Total: -84.85 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: 0.69 Total: -37.54 kcal Atomic # 14 Polarization: 52.98 SS G_CDS: 1.71 Total: 54.69 kcal Total: -73.21 0.70 -72.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777415541.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.406 kcal (2) G-P(sol) polarization free energy of solvation -73.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds