Wall clock time and date at job start Tue Mar 31 2020 05:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 120.00099 * 2 1 4 4 H 1.48499 * 109.47248 * 275.25490 * 3 2 1 5 5 H 1.48503 * 109.47228 * 35.25343 * 3 2 1 6 6 H 1.48503 * 109.47494 * 155.25654 * 3 2 1 7 7 C 1.38896 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99379 * 1.40429 * 7 2 1 9 9 N 1.37139 * 120.00327 * 181.40619 * 7 2 1 10 10 C 1.34769 * 120.00008 * 125.54590 * 9 7 2 11 11 O 1.21277 * 120.00134 * 183.37573 * 10 9 7 12 12 C 1.50697 * 120.00176 * 3.38353 * 10 9 7 13 13 O 1.45200 * 109.47537 * 174.99618 * 12 10 9 14 14 C 1.34228 * 117.00520 * 184.90887 * 13 12 10 15 15 O 1.20831 * 119.99690 * 5.08828 * 14 13 12 16 16 C 1.50692 * 120.00341 * 185.08467 * 14 13 12 17 17 N 1.46500 * 109.47363 * 180.02562 * 16 14 13 18 18 C 1.34946 * 126.03848 * 124.99612 * 17 16 14 19 19 C 1.35322 * 107.74808 * 179.97438 * 18 17 16 20 20 C 1.39872 * 107.91874 * 0.02562 * 19 18 17 21 21 N 1.30841 * 108.19956 * 359.74117 * 20 19 18 22 22 C 1.39785 * 119.99714 * 305.55282 * 9 7 2 23 23 C 1.38958 * 120.08276 * 351.67447 * 22 9 7 24 24 C 1.38083 * 119.92779 * 179.97438 * 23 22 9 25 25 C 1.38310 * 120.07222 * 359.97438 * 24 23 22 26 26 C 1.38303 * 120.16063 * 0.02562 * 25 24 23 27 27 C 1.38080 * 120.07621 * 359.97438 * 26 25 24 28 28 H 0.96997 * 120.00195 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47071 * 294.99615 * 12 10 9 30 30 H 1.09003 * 109.47109 * 54.99591 * 12 10 9 31 31 H 1.09004 * 109.46900 * 300.00258 * 16 14 13 32 32 H 1.08998 * 109.47236 * 60.00196 * 16 14 13 33 33 H 1.08002 * 126.12764 * 359.96101 * 18 17 16 34 34 H 1.08002 * 126.04202 * 179.97438 * 19 18 17 35 35 H 1.08000 * 125.89798 * 179.97438 * 20 19 18 36 36 H 1.08002 * 120.03940 * 359.70778 * 23 22 9 37 37 H 1.07991 * 119.96600 * 179.97438 * 24 23 22 38 38 H 1.08001 * 119.91556 * 179.97438 * 25 24 23 39 39 H 1.08001 * 119.96251 * 180.02562 * 26 25 24 40 40 H 1.08002 * 120.04211 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.3846 2.1105 -1.3942 5 1 1.5056 2.6181 0.8081 6 1 3.5969 1.4107 0.5860 7 6 2.0087 -1.2028 0.0005 8 1 1.4689 -2.1380 -0.0220 9 7 3.3798 -1.2030 0.0297 10 6 4.0334 -1.8928 0.9853 11 8 5.2435 -1.8436 1.0484 12 6 3.2606 -2.7254 1.9756 13 8 4.1875 -3.4579 2.8198 14 6 3.6583 -4.3289 3.6932 15 8 2.4691 -4.5427 3.6880 16 6 4.5473 -5.0403 4.6803 17 7 3.7363 -5.9299 5.5153 18 6 3.9329 -7.2536 5.6890 19 6 2.9743 -7.7061 6.5303 20 6 2.1639 -6.6218 6.8822 21 7 2.6228 -5.5556 6.2785 22 6 4.0993 -0.4876 -0.9318 23 6 3.4401 0.0801 -2.0153 24 6 4.1540 0.7866 -2.9629 25 6 5.5236 0.9300 -2.8342 26 6 6.1831 0.3663 -1.7571 27 6 5.4755 -0.3415 -0.8057 28 1 -0.4850 0.8400 0.0004 29 1 2.6428 -2.0742 2.5939 30 1 2.6235 -3.4290 1.4397 31 1 5.2918 -5.6268 4.1418 32 1 5.0495 -4.3070 5.3113 33 1 4.7150 -7.8459 5.2374 34 1 2.8556 -8.7246 6.8693 35 1 1.3093 -6.6577 7.5417 36 1 2.3712 -0.0347 -2.1186 37 1 3.6424 1.2278 -3.8055 38 1 6.0795 1.4827 -3.5770 39 1 7.2526 0.4806 -1.6595 40 1 5.9911 -0.7818 0.0349 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000792668041.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:56 Heat of formation + Delta-G solvation = 31.575692 kcal Electronic energy + Delta-G solvation = -27191.852837 eV Core-core repulsion = 23168.702763 eV Total energy + Delta-G solvation = -4023.150074 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.36300 -40.46434 -39.86705 -37.69740 -36.24297 -35.26000 -33.59386 -32.34399 -30.32619 -30.22606 -30.04525 -28.46173 -26.99803 -25.35163 -22.56543 -21.86131 -21.43037 -21.24027 -20.40767 -19.65072 -18.34875 -17.80314 -17.47641 -16.67312 -16.25717 -16.21556 -15.87761 -15.48066 -15.09170 -14.50044 -14.39332 -14.05984 -13.81751 -13.71693 -13.40349 -13.25173 -12.96976 -12.91183 -12.75589 -12.53354 -12.49182 -12.04916 -12.00050 -11.44732 -11.10305 -10.78829 -10.74684 -10.55322 -10.47857 -10.37969 -10.17516 -9.55930 -9.51755 -9.11009 -8.78226 -8.57120 -8.12536 -7.20448 -6.66131 -4.65792 1.63044 1.91695 2.06813 2.09196 2.18564 2.69845 2.77618 3.07628 3.17610 3.26625 3.32422 3.91242 4.00711 4.34508 4.49168 4.61229 4.72906 4.80791 4.82617 4.92848 5.23817 5.39709 5.53505 5.59939 5.60558 5.64262 5.76395 5.82143 5.85696 6.19389 6.28944 6.43341 6.49480 6.50139 6.70324 6.75389 7.06926 7.13395 7.19689 7.25507 7.57826 7.60832 7.76013 7.83345 8.04289 8.60908 8.89916 9.16004 10.35673 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.019774 B = 0.002986 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.694149 B = 9373.499344 C =10390.001016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.086 3.914 3 Si 0.873 3.127 4 H -0.252 1.252 5 H -0.288 1.288 6 H -0.257 1.257 7 C -0.383 4.383 8 H 0.112 0.888 9 N -0.401 5.401 10 C 0.502 3.498 11 O -0.541 6.541 12 C 0.074 3.926 13 O -0.338 6.338 14 C 0.443 3.557 15 O -0.476 6.476 16 C 0.148 3.852 17 N -0.370 5.370 18 C 0.054 3.946 19 C -0.270 4.270 20 C 0.043 3.957 21 N -0.268 5.268 22 C 0.158 3.842 23 C -0.158 4.158 24 C -0.105 4.105 25 C -0.169 4.169 26 C -0.108 4.108 27 C -0.183 4.183 28 H 0.282 0.718 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.139 0.861 32 H 0.129 0.871 33 H 0.176 0.824 34 H 0.148 0.852 35 H 0.184 0.816 36 H 0.140 0.860 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.708 -8.928 6.694 14.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.126 4.126 3 Si 0.699 3.301 4 H -0.177 1.177 5 H -0.215 1.215 6 H -0.180 1.180 7 C -0.509 4.509 8 H 0.129 0.871 9 N -0.111 5.111 10 C 0.293 3.707 11 O -0.424 6.424 12 C -0.002 4.002 13 O -0.254 6.254 14 C 0.282 3.718 15 O -0.361 6.361 16 C 0.025 3.975 17 N -0.154 5.154 18 C -0.090 4.090 19 C -0.300 4.300 20 C -0.145 4.145 21 N -0.088 5.088 22 C 0.062 3.938 23 C -0.178 4.178 24 C -0.123 4.123 25 C -0.188 4.188 26 C -0.127 4.127 27 C -0.202 4.202 28 H 0.092 0.908 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.156 0.844 32 H 0.147 0.853 33 H 0.193 0.807 34 H 0.166 0.834 35 H 0.200 0.800 36 H 0.157 0.843 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.132 0.868 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 8.603 -7.564 6.462 13.152 hybrid contribution -0.089 0.066 -0.207 0.234 sum 8.514 -7.498 6.256 12.955 Atomic orbital electron populations 1.69642 1.06178 1.28958 1.43410 1.25489 0.95270 0.99130 0.92684 0.86955 0.80748 0.82425 0.79984 1.17707 1.21548 1.18045 1.19089 0.77298 0.96222 1.58261 0.87081 1.41224 1.07094 1.41815 1.20997 1.20180 0.87047 0.82115 0.81375 1.90255 1.14197 1.65377 1.72528 1.22608 0.90060 0.95311 0.92177 1.86408 1.41178 1.50854 1.46917 1.23422 0.88578 0.78916 0.80906 1.90782 1.16358 1.61294 1.67671 1.20947 0.90570 0.94841 0.91176 1.48175 1.24230 1.06507 1.36528 1.22569 1.01393 0.84585 1.00442 1.21517 0.99954 1.00821 1.07688 1.23966 1.00268 0.90521 0.99732 1.77552 0.98842 1.23666 1.08763 1.18445 0.91256 0.94449 0.89611 1.21033 1.01597 1.00804 0.94372 1.20832 0.94078 0.98991 0.98437 1.20944 0.94589 1.03733 0.99535 1.21025 0.99140 0.97858 0.94692 1.22758 0.93300 1.01481 1.02675 0.90786 0.87352 0.87975 0.84356 0.85325 0.80708 0.83382 0.79952 0.84267 0.86726 0.87225 0.86812 0.80477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.59 13.96 55.49 0.77 -21.81 16 2 C 0.09 2.18 4.61 -17.49 -0.08 2.10 16 3 Si 0.87 20.55 23.85 -169.99 -4.05 16.50 16 4 H -0.25 -5.69 6.14 56.52 0.35 -5.34 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.26 -6.33 6.48 56.52 0.37 -5.96 16 7 C -0.38 -9.57 8.01 -14.93 -0.12 -9.69 16 8 H 0.11 2.90 7.70 -52.48 -0.40 2.49 16 9 N -0.40 -9.47 2.30 -58.98 -0.14 -9.61 16 10 C 0.50 11.15 7.65 -10.99 -0.08 11.07 16 11 O -0.54 -12.34 12.92 -14.05 -0.18 -12.52 16 12 C 0.07 1.46 4.87 36.00 0.18 1.63 16 13 O -0.34 -5.82 9.76 -45.88 -0.45 -6.27 16 14 C 0.44 6.85 7.98 36.00 0.29 7.14 16 15 O -0.48 -9.15 15.38 -18.75 -0.29 -9.44 16 16 C 0.15 1.52 7.10 -5.20 -0.04 1.49 16 17 N -0.37 -4.51 3.40 -62.55 -0.21 -4.73 16 18 C 0.05 0.51 11.45 -17.22 -0.20 0.32 16 19 C -0.27 -2.62 10.80 -40.01 -0.43 -3.05 16 20 C 0.04 0.50 12.03 -17.36 -0.21 0.29 16 21 N -0.27 -3.96 11.66 30.63 0.36 -3.61 16 22 C 0.16 3.64 4.12 -83.70 -0.35 3.30 16 23 C -0.16 -3.45 5.57 -39.37 -0.22 -3.67 16 24 C -0.10 -1.98 9.76 -39.61 -0.39 -2.37 16 25 C -0.17 -2.95 10.04 -39.53 -0.40 -3.35 16 26 C -0.11 -1.99 10.04 -39.62 -0.40 -2.39 16 27 C -0.18 -3.92 9.03 -39.37 -0.36 -4.27 16 28 H 0.28 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.11 2.15 8.14 -51.93 -0.42 1.73 16 30 H 0.10 1.99 7.57 -51.93 -0.39 1.59 16 31 H 0.14 0.86 8.07 -51.93 -0.42 0.44 16 32 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.15 1.03 8.06 -52.49 -0.42 0.60 16 35 H 0.18 1.56 8.06 -52.49 -0.42 1.13 16 36 H 0.14 3.21 5.70 -52.49 -0.30 2.91 16 37 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 38 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 39 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.18 3.93 4.58 -55.99 -0.26 3.67 16 LS Contribution 342.58 15.07 5.16 5.16 Total: -1.00 -33.02 342.58 -6.20 -39.22 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -4.38 Total: 8.57 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -2.80 Total: -1.46 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.78 Total: -39.76 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.92 Total: -28.24 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.05 Total: 16.50 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.02 -6.20 -39.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000792668041.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.799 kcal (2) G-P(sol) polarization free energy of solvation -33.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds