Wall clock time and date at job start Tue Mar 31 2020 05:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86801 * 119.99594 * 2 1 4 4 H 1.48504 * 109.46873 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47105 * 299.99377 * 3 2 1 6 6 H 1.48498 * 109.47546 * 59.99621 * 3 2 1 7 7 C 1.38943 * 119.99974 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99660 * 179.97438 * 7 2 1 9 9 N 1.37098 * 120.00322 * 0.02562 * 7 2 1 10 10 C 1.34776 * 120.00220 * 179.97438 * 9 7 2 11 11 O 1.21295 * 119.99987 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00306 * 179.97438 * 10 9 7 13 13 N 1.46495 * 109.47390 * 179.97438 * 12 10 9 14 14 C 1.34777 * 119.99999 * 180.02562 * 13 12 10 15 15 O 1.21275 * 120.00130 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99609 * 179.97438 * 14 13 12 17 17 N 1.46507 * 109.46557 * 179.97438 * 16 14 13 18 18 C 1.34665 * 124.64296 * 264.99685 * 17 16 14 19 19 C 1.37860 * 109.61978 * 180.02562 * 18 17 16 20 20 C 1.41735 * 126.91196 * 179.97438 * 19 18 17 21 21 O 1.21404 * 119.99925 * 179.97438 * 20 19 18 22 22 C 1.47612 * 106.17632 * 359.74704 * 19 18 17 23 23 C 1.39193 * 133.98945 * 179.49988 * 22 19 18 24 24 C 1.37806 * 119.67024 * 180.47534 * 23 22 19 25 25 C 1.38721 * 120.26842 * 0.25865 * 24 23 22 26 26 C 1.37773 * 120.63971 * 359.97438 * 25 24 23 27 27 C 1.38017 * 124.64537 * 85.00017 * 17 16 14 28 28 H 0.97003 * 120.00684 * 0.02562 * 1 2 3 29 29 H 0.96994 * 119.99784 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.47159 * 59.99434 * 12 10 9 31 31 H 1.08997 * 109.47096 * 299.99716 * 12 10 9 32 32 H 0.97004 * 119.99713 * 359.97438 * 13 12 10 33 33 H 1.08999 * 109.46987 * 59.99873 * 16 14 13 34 34 H 1.08998 * 109.47353 * 299.99004 * 16 14 13 35 35 H 1.08009 * 125.19290 * 0.02562 * 18 17 16 36 36 H 1.08003 * 120.00074 * 359.97438 * 20 19 18 37 37 H 1.08002 * 120.16755 * 0.75706 * 23 22 19 38 38 H 1.07997 * 119.85962 * 180.28130 * 24 23 22 39 39 H 1.07999 * 119.68057 * 180.02562 * 25 24 23 40 40 H 1.08001 * 120.03010 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8892 2.3966 1.2124 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0001 9 7 1.3234 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0001 12 6 1.2439 -4.8629 0.0011 13 7 2.1959 -5.9764 0.0004 14 6 1.7466 -7.2471 0.0002 15 8 0.5543 -7.4687 0.0011 16 6 2.7260 -8.3925 -0.0011 17 7 1.9935 -9.6612 -0.0004 18 6 1.6957 -10.3727 1.1035 19 6 1.0031 -11.5104 0.7481 20 6 0.5128 -12.5154 1.6190 21 8 -0.0851 -13.4708 1.1678 22 6 0.8699 -11.4687 -0.7214 23 6 0.2926 -12.3144 -1.6642 24 6 0.3476 -11.9843 -3.0010 25 6 0.9793 -10.8183 -3.4080 26 6 1.5589 -9.9750 -2.4854 27 6 1.5141 -10.2911 -1.1311 28 1 -0.4851 0.8400 -0.0004 29 1 0.3534 -2.3906 0.0005 30 1 0.6168 -4.9209 -0.8886 31 1 0.6176 -4.9205 0.8914 32 1 3.1495 -5.7991 -0.0007 33 1 3.3535 -8.3350 0.8883 34 1 3.3518 -8.3344 -0.8917 35 1 1.9593 -10.0944 2.1133 36 1 0.6710 -12.4312 2.6841 37 1 -0.2000 -13.2225 -1.3493 38 1 -0.1033 -12.6360 -3.7347 39 1 1.0164 -10.5687 -4.4581 40 1 2.0485 -9.0699 -2.8132 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804820943.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:08 Heat of formation + Delta-G solvation = -40.199258 kcal Electronic energy + Delta-G solvation = -26205.349319 eV Core-core repulsion = 22179.086850 eV Total energy + Delta-G solvation = -4026.262469 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.90939 -39.76881 -38.58366 -38.25776 -37.22832 -34.67611 -33.88463 -33.29678 -31.51609 -30.72776 -29.50168 -28.88331 -27.04772 -24.67988 -23.91365 -22.97280 -21.73865 -20.50844 -19.92416 -19.73539 -18.32106 -17.70768 -17.48005 -17.05779 -15.96809 -15.78317 -15.72798 -15.67785 -15.20979 -15.02856 -14.66903 -14.49710 -14.25166 -14.07957 -14.00981 -13.81088 -13.69227 -13.30438 -12.81668 -12.72436 -12.36982 -12.03407 -11.83846 -11.78812 -11.73568 -11.22941 -11.17370 -10.49780 -10.43059 -10.21263 -9.76192 -9.75997 -9.73674 -9.10774 -8.78784 -8.46432 -8.22209 -7.92469 -6.62202 -4.04873 0.65556 1.33955 1.60494 2.18628 2.37447 2.97666 3.02150 3.15356 3.19048 3.23676 3.59928 3.81158 4.01185 4.20574 4.26737 4.34216 4.52687 4.55313 4.63077 4.71053 4.93026 4.97055 5.03376 5.06047 5.35436 5.42317 5.49247 5.69993 5.72936 5.76574 5.90082 5.95312 6.23941 6.35859 6.37739 6.48109 6.50928 6.76610 6.94296 7.35826 7.43573 7.57288 7.79524 8.06260 8.32019 8.93194 9.26507 9.73288 10.54428 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.024531 B = 0.002093 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.156797 B =13374.160560 C =13785.742408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.027 3.973 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.307 4.307 8 H 0.107 0.893 9 N -0.546 5.546 10 C 0.425 3.575 11 O -0.599 6.599 12 C 0.110 3.890 13 N -0.700 5.700 14 C 0.489 3.511 15 O -0.527 6.527 16 C 0.082 3.918 17 N -0.441 5.441 18 C 0.153 3.847 19 C -0.297 4.297 20 C 0.408 3.592 21 O -0.486 6.486 22 C -0.056 4.056 23 C -0.074 4.074 24 C -0.136 4.136 25 C -0.105 4.105 26 C -0.115 4.115 27 C 0.088 3.912 28 H 0.275 0.725 29 H 0.396 0.604 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.413 0.587 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.184 0.816 36 H 0.092 0.908 37 H 0.130 0.870 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.237 -19.644 -0.179 20.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.436 4.436 8 H 0.125 0.875 9 N -0.180 5.180 10 C 0.211 3.789 11 O -0.486 6.486 12 C -0.018 4.018 13 N -0.355 5.355 14 C 0.272 3.728 15 O -0.403 6.403 16 C -0.044 4.044 17 N -0.120 5.120 18 C 0.018 3.982 19 C -0.306 4.306 20 C 0.271 3.729 21 O -0.362 6.362 22 C -0.059 4.059 23 C -0.093 4.093 24 C -0.154 4.154 25 C -0.124 4.124 26 C -0.135 4.135 27 C -0.014 4.014 28 H 0.085 0.915 29 H 0.230 0.770 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.251 0.749 33 H 0.147 0.853 34 H 0.142 0.858 35 H 0.201 0.799 36 H 0.108 0.892 37 H 0.148 0.852 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.885 -19.805 -0.447 20.187 hybrid contribution 0.276 1.460 0.066 1.487 sum 4.161 -18.344 -0.381 18.814 Atomic orbital electron populations 1.69616 1.06063 1.28624 1.48900 1.25354 0.95683 1.00060 0.96583 0.85743 0.79664 0.80676 0.77930 1.19088 1.20525 1.20528 1.19781 0.93501 0.81897 1.48429 0.87542 1.41810 1.09542 1.04522 1.62135 1.19659 0.88269 0.84908 0.86098 1.90498 1.13621 1.86761 1.57727 1.20991 0.91718 0.85625 1.03453 1.45625 1.11917 1.04331 1.73650 1.20649 0.89935 0.84136 0.78042 1.90801 1.16105 1.84450 1.48909 1.21802 0.93859 0.81054 1.07641 1.43096 1.45702 1.17644 1.05534 1.22549 0.93936 0.90181 0.91530 1.20408 1.14780 1.01544 0.93853 1.21647 0.75216 0.82515 0.93553 1.90519 1.33245 1.31384 1.81062 1.18864 1.00111 0.94650 0.92298 1.20617 0.98077 0.98948 0.91613 1.21000 1.01231 0.97648 0.95560 1.20808 0.98182 0.94440 0.98976 1.20069 1.03481 1.00742 0.89210 1.18227 1.00982 0.94064 0.88124 0.91494 0.77003 0.89692 0.89658 0.74895 0.85324 0.85848 0.79865 0.89186 0.85176 0.85783 0.85553 0.86273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.10 13.05 55.50 0.72 -22.38 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 19.81 29.55 -169.99 -5.02 14.79 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.31 -7.99 9.68 -14.94 -0.14 -8.14 16 8 H 0.11 2.89 7.16 -52.48 -0.38 2.52 16 9 N -0.55 -12.85 5.29 -10.96 -0.06 -12.91 16 10 C 0.43 9.02 7.85 -10.99 -0.09 8.94 16 11 O -0.60 -14.19 15.24 5.54 0.08 -14.10 16 12 C 0.11 1.81 6.15 -5.20 -0.03 1.78 16 13 N -0.70 -9.54 5.53 -61.48 -0.34 -9.88 16 14 C 0.49 6.18 7.90 -10.98 -0.09 6.09 16 15 O -0.53 -8.89 16.42 5.56 0.09 -8.79 16 16 C 0.08 0.66 6.41 -5.19 -0.03 0.63 16 17 N -0.44 -4.51 2.21 -115.28 -0.25 -4.76 16 18 C 0.15 1.35 11.22 -16.45 -0.18 1.17 16 19 C -0.30 -3.33 6.13 -104.88 -0.64 -3.97 16 20 C 0.41 4.24 11.44 32.07 0.37 4.60 16 21 O -0.49 -6.91 16.81 5.45 0.09 -6.82 16 22 C -0.06 -0.74 6.24 -104.93 -0.65 -1.39 16 23 C -0.07 -0.93 9.80 -39.38 -0.39 -1.31 16 24 C -0.14 -1.46 10.03 -39.56 -0.40 -1.85 16 25 C -0.10 -1.10 10.01 -39.57 -0.40 -1.49 16 26 C -0.11 -1.32 9.96 -39.42 -0.39 -1.71 16 27 C 0.09 1.09 6.77 -83.95 -0.57 0.52 16 28 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 29 H 0.40 9.01 7.90 -40.82 -0.32 8.69 16 30 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.41 5.28 7.44 -40.82 -0.30 4.97 16 33 H 0.13 0.57 8.10 -51.93 -0.42 0.14 16 34 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.18 0.79 8.06 -52.48 -0.42 0.36 16 36 H 0.09 0.54 8.06 -52.48 -0.42 0.12 16 37 H 0.13 1.62 7.38 -52.49 -0.39 1.23 16 38 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 LS Contribution 361.51 15.07 5.45 5.45 Total: -1.00 -35.26 361.51 -7.30 -42.56 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -4.33 Total: 12.43 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -3.73 Total: 4.42 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 0.07 Total: -49.93 kcal Atomic # 8 Polarization: -29.98 SS G_CDS: 0.27 Total: -29.72 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.26 -7.30 -42.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804820943.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.361 kcal (2) G-P(sol) polarization free energy of solvation -35.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds