Wall clock time and date at job start Tue Mar 31 2020 05:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86798 * 119.99767 * 2 1 4 4 H 1.48508 * 109.46810 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47291 * 299.99792 * 3 2 1 6 6 H 1.48496 * 109.47203 * 60.00393 * 3 2 1 7 7 C 1.38951 * 119.99765 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99767 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00344 * 0.02562 * 7 2 1 10 10 C 1.34771 * 120.00404 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99488 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00251 * 179.97438 * 10 9 7 13 13 N 1.46506 * 109.46938 * 180.02562 * 12 10 9 14 14 C 1.34774 * 119.99660 * 180.02562 * 13 12 10 15 15 O 1.21283 * 119.99958 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.99799 * 179.97438 * 14 13 12 17 17 C 1.50699 * 109.47077 * 179.97438 * 16 14 13 18 18 C 1.41003 * 126.70263 * 125.00172 * 17 16 14 19 19 C 1.36831 * 103.88282 * 179.97438 * 18 17 16 20 20 C 1.47844 * 126.92395 * 179.97438 * 19 18 17 21 21 C 1.39567 * 120.13817 * 179.97438 * 20 19 18 22 22 C 1.37963 * 119.85204 * 180.02562 * 21 20 19 23 23 C 1.38355 * 120.14529 * 359.97438 * 22 21 20 24 24 C 1.38355 * 120.29228 * 0.02562 * 23 22 21 25 25 C 1.37966 * 120.14247 * 0.02562 * 24 23 22 26 26 O 1.34491 * 106.14680 * 0.26326 * 19 18 17 27 27 N 1.20895 * 111.45277 * 359.52731 * 26 19 18 28 28 H 0.97000 * 120.00287 * 0.02562 * 1 2 3 29 29 H 0.97008 * 119.99594 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46732 * 60.00591 * 12 10 9 31 31 H 1.08996 * 109.47098 * 300.00283 * 12 10 9 32 32 H 0.96995 * 120.00246 * 0.02562 * 13 12 10 33 33 H 1.09001 * 109.46858 * 60.00643 * 16 14 13 34 34 H 1.08996 * 109.47387 * 300.00080 * 16 14 13 35 35 H 1.08007 * 128.06072 * 359.94175 * 18 17 16 36 36 H 1.08000 * 120.07565 * 0.02562 * 21 20 19 37 37 H 1.08004 * 119.93003 * 180.02562 * 22 21 20 38 38 H 1.08006 * 119.85810 * 179.74266 * 23 22 21 39 39 H 1.07993 * 119.93553 * 179.97438 * 24 23 22 40 40 H 1.08003 * 120.07678 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2101 -3.5578 0.0010 12 6 1.2436 -4.8630 0.0011 13 7 2.1957 -5.9765 0.0016 14 6 1.7464 -7.2471 0.0017 15 8 0.5540 -7.4687 0.0008 16 6 2.7257 -8.3926 0.0016 17 6 1.9722 -9.6977 0.0023 18 6 2.1120 -10.7520 -0.9235 19 6 1.2184 -11.6922 -0.4878 20 6 0.9495 -13.0118 -1.0976 21 6 0.0014 -13.8653 -0.5315 22 6 -0.2445 -15.0957 -1.1051 23 6 0.4460 -15.4839 -2.2394 24 6 1.3872 -14.6426 -2.8057 25 6 1.6433 -13.4100 -2.2413 26 8 0.6295 -11.1711 0.6033 27 7 1.0648 -10.0725 0.8586 28 1 -0.4850 0.8400 -0.0004 29 1 0.3533 -2.3906 0.0005 30 1 0.6167 -4.9209 -0.8887 31 1 0.6173 -4.9205 0.8913 32 1 3.1493 -5.7993 0.0019 33 1 3.3524 -8.3349 0.8916 34 1 3.3523 -8.3349 -0.8884 35 1 2.7707 -10.8050 -1.7778 36 1 -0.5387 -13.5633 0.3537 37 1 -0.9783 -15.7570 -0.6683 38 1 0.2528 -16.4499 -2.6823 39 1 1.9231 -14.9516 -3.6908 40 1 2.3779 -12.7539 -2.6844 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804821152.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:48 Heat of formation + Delta-G solvation = 10.538128 kcal Electronic energy + Delta-G solvation = -25400.787918 eV Core-core repulsion = 21376.725587 eV Total energy + Delta-G solvation = -4024.062331 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.01618 -39.62267 -39.47594 -38.15031 -34.90074 -34.43288 -33.69372 -33.49279 -31.46215 -31.40215 -30.03092 -29.73238 -27.26313 -24.53458 -24.10025 -23.51139 -22.26807 -21.14764 -19.92909 -19.52095 -18.29657 -18.05958 -17.81985 -17.02411 -16.63116 -16.07691 -15.64920 -15.42827 -15.36495 -15.25538 -14.47526 -14.37328 -14.22007 -13.97051 -13.85206 -13.55413 -13.38699 -13.28151 -13.08564 -12.67766 -12.21499 -11.92010 -11.78400 -11.65027 -11.55092 -11.27133 -11.15440 -10.57437 -10.42213 -10.34404 -10.30340 -9.72827 -9.66570 -9.43466 -8.83493 -8.67120 -8.65378 -8.12089 -6.53133 -3.95327 0.29123 0.93068 1.71222 2.09345 2.76315 2.78285 3.09166 3.21022 3.26412 3.34403 3.39881 3.71853 3.91977 4.08523 4.13505 4.45467 4.50632 4.61125 4.78600 4.84912 4.86980 4.90405 4.99695 5.03927 5.15136 5.18056 5.28327 5.37048 5.49996 5.56258 5.77911 5.90354 5.94420 5.97316 6.01408 6.03230 6.04980 6.44291 6.63206 7.44586 7.74501 7.90299 8.15048 8.38839 8.43928 9.02784 9.37357 9.84915 10.63764 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.040627 B = 0.001647 C = 0.001635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.038248 B =16993.987160 C =17120.138028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.026 3.974 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.598 6.598 12 C 0.110 3.890 13 N -0.706 5.706 14 C 0.512 3.488 15 O -0.535 6.535 16 C -0.062 4.062 17 C 0.033 3.967 18 C -0.207 4.207 19 C 0.000 4.000 20 C -0.018 4.018 21 C -0.095 4.095 22 C -0.118 4.118 23 C -0.110 4.110 24 C -0.118 4.118 25 C -0.092 4.092 26 O 0.114 5.886 27 N -0.329 5.329 28 H 0.274 0.726 29 H 0.396 0.604 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.412 0.588 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.174 0.826 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.461 -29.389 -4.504 29.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.435 4.435 8 H 0.124 0.876 9 N -0.183 5.183 10 C 0.214 3.786 11 O -0.485 6.485 12 C -0.018 4.018 13 N -0.361 5.361 14 C 0.296 3.704 15 O -0.412 6.412 16 C -0.103 4.103 17 C -0.126 4.126 18 C -0.228 4.228 19 C -0.063 4.063 20 C -0.019 4.019 21 C -0.114 4.114 22 C -0.136 4.136 23 C -0.128 4.128 24 C -0.136 4.136 25 C -0.111 4.111 26 O 0.042 5.958 27 N -0.028 5.028 28 H 0.084 0.916 29 H 0.230 0.770 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.250 0.750 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.192 0.808 36 H 0.151 0.849 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 1.738 -28.713 -3.400 28.966 hybrid contribution 0.613 0.916 -0.716 1.314 sum 2.351 -27.797 -4.116 28.199 Atomic orbital electron populations 1.69623 1.06036 1.28463 1.49276 1.25338 0.95670 0.99974 0.96752 0.85747 0.79667 0.80768 0.77835 1.19120 1.20608 1.20595 1.19788 0.93506 0.81982 1.48230 0.87583 1.41807 1.09509 1.04497 1.62511 1.19729 0.88284 0.84981 0.85648 1.90491 1.13682 1.86833 1.57463 1.20950 0.91858 0.85708 1.03271 1.45639 1.11639 1.04458 1.74363 1.20194 0.89526 0.83625 0.77029 1.90743 1.16554 1.84674 1.49235 1.19995 0.96935 0.86987 1.06373 1.22652 0.98000 0.97881 0.94027 1.22498 1.03920 0.93094 1.03289 1.22459 0.96635 0.95883 0.91310 1.17641 0.98903 0.89394 0.95938 1.21352 0.96503 0.93674 0.99849 1.21135 0.99983 0.96241 0.96227 1.21343 0.95878 0.99764 0.95836 1.21085 0.98445 0.93845 1.00236 1.21127 0.98967 0.96745 0.94222 1.84953 1.50312 1.23391 1.37165 1.73879 1.11511 0.95155 1.22253 0.91611 0.77025 0.89861 0.89839 0.75048 0.86670 0.86350 0.80839 0.84942 0.85332 0.85622 0.85262 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.94 13.05 55.50 0.72 -23.22 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.51 29.55 -169.99 -5.02 15.49 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.31 -8.31 9.68 -14.93 -0.14 -8.46 16 8 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 9 N -0.55 -13.65 5.29 -10.97 -0.06 -13.71 16 10 C 0.43 9.81 7.85 -10.99 -0.09 9.72 16 11 O -0.60 -15.15 15.24 5.55 0.08 -15.07 16 12 C 0.11 2.05 6.15 -5.19 -0.03 2.01 16 13 N -0.71 -11.56 5.53 -61.47 -0.34 -11.90 16 14 C 0.51 8.11 7.82 -10.99 -0.09 8.03 16 15 O -0.54 -10.60 15.59 5.55 0.09 -10.51 16 16 C -0.06 -0.70 6.29 -29.03 -0.18 -0.89 16 17 C 0.03 0.42 6.08 -82.20 -0.50 -0.08 16 18 C -0.21 -2.12 10.47 -39.04 -0.41 -2.53 16 19 C 0.00 0.00 7.16 -36.16 -0.26 -0.26 16 20 C -0.02 -0.15 5.87 -104.98 -0.62 -0.77 16 21 C -0.10 -0.75 9.74 -39.19 -0.38 -1.13 16 22 C -0.12 -0.72 10.03 -39.64 -0.40 -1.12 16 23 C -0.11 -0.60 10.04 -39.50 -0.40 -1.00 16 24 C -0.12 -0.67 10.03 -39.64 -0.40 -1.07 16 25 C -0.09 -0.64 9.59 -39.19 -0.38 -1.01 16 26 O 0.11 1.53 11.04 15.97 0.18 1.70 16 27 N -0.33 -5.03 11.45 33.51 0.38 -4.65 16 28 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 29 H 0.40 9.52 7.90 -40.82 -0.32 9.20 16 30 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 32 H 0.41 6.36 7.44 -40.82 -0.30 6.06 16 33 H 0.12 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.12 0.93 8.13 -51.93 -0.42 0.51 16 35 H 0.17 1.17 7.47 -52.48 -0.39 0.78 16 36 H 0.13 0.95 7.96 -52.49 -0.42 0.53 16 37 H 0.13 0.52 8.06 -52.48 -0.42 0.09 16 38 H 0.13 0.41 8.06 -52.48 -0.42 -0.02 16 39 H 0.13 0.45 8.06 -52.49 -0.42 0.02 16 40 H 0.13 0.67 7.16 -52.48 -0.38 0.30 16 LS Contribution 360.51 15.07 5.43 5.43 Total: -1.00 -34.52 360.51 -7.18 -41.70 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -4.28 Total: 12.72 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -4.36 Total: 2.02 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: 0.71 Total: -53.48 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: 0.35 Total: -23.88 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.52 -7.18 -41.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804821152.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.235 kcal (2) G-P(sol) polarization free energy of solvation -34.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds