Wall clock time and date at job start Tue Mar 31 2020 05:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53660 * 112.53848 * 2 1 4 4 C 1.54891 * 100.63582 * 269.46157 * 3 2 1 5 5 C 1.51126 * 104.27417 * 333.59071 * 4 3 2 6 6 O 1.21284 * 124.72657 * 191.24981 * 5 4 3 7 7 N 1.35815 * 110.54357 * 11.27378 * 5 4 3 8 8 C 1.46844 * 138.49835 * 194.78879 * 7 5 4 9 9 H 1.08996 * 108.67430 * 43.25798 * 8 7 5 10 10 C 1.50703 * 108.67394 * 285.40889 * 8 7 5 11 11 O 1.20827 * 120.00033 * 359.97438 * 10 8 7 12 12 O 1.34230 * 120.00169 * 179.97438 * 10 8 7 13 13 C 1.45204 * 117.00080 * 179.97438 * 12 10 8 14 14 C 1.52998 * 109.46527 * 180.02562 * 13 12 10 15 15 O 1.42900 * 109.47414 * 65.00403 * 14 13 12 16 16 C 1.42904 * 113.99707 * 179.97438 * 15 14 13 17 17 C 1.50701 * 109.46913 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99525 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00236 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99489 * 359.97438 * 19 17 16 21 21 Si 1.86792 * 120.00244 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47123 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47390 * 119.99733 * 21 19 17 24 24 H 1.48506 * 109.47220 * 240.00070 * 21 19 17 25 25 C 1.54428 * 113.56592 * 164.33304 * 8 7 5 26 26 S 1.83552 * 113.12786 * 126.02239 * 2 1 3 27 27 H 1.09000 * 109.46862 * 178.69256 * 1 2 3 28 28 H 1.09007 * 109.46920 * 298.68308 * 1 2 3 29 29 H 1.08989 * 109.47281 * 58.68766 * 1 2 3 30 30 H 1.09006 * 111.17971 * 151.61626 * 3 2 1 31 31 H 1.08999 * 111.18483 * 27.30814 * 3 2 1 32 32 H 1.09000 * 110.47050 * 214.88718 * 4 3 2 33 33 H 1.08999 * 110.47078 * 92.28854 * 4 3 2 34 34 H 1.09000 * 109.46935 * 300.00206 * 13 12 10 35 35 H 1.08996 * 109.46712 * 60.00356 * 13 12 10 36 36 H 1.09010 * 109.46493 * 184.99968 * 14 13 12 37 37 H 1.09000 * 109.47510 * 304.99703 * 14 13 12 38 38 H 1.08997 * 109.46978 * 299.99461 * 16 15 14 39 39 H 1.08992 * 109.47191 * 60.00085 * 16 15 14 40 40 H 0.96998 * 119.99543 * 180.02562 * 20 19 17 41 41 H 1.08990 * 110.98655 * 224.42243 * 25 8 7 42 42 H 1.09001 * 111.01451 * 100.62648 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1191 1.4192 0.0000 4 6 2.2419 1.6778 -1.5222 5 6 2.3810 0.2987 -2.1244 6 8 2.6950 0.0754 -3.2744 7 7 2.1049 -0.6557 -1.1984 8 6 2.2848 -2.1025 -1.0230 9 1 3.2900 -2.3711 -1.3477 10 6 1.2920 -2.8220 -1.8993 11 8 0.5254 -2.1910 -2.5878 12 8 1.2593 -4.1638 -1.9149 13 6 0.2769 -4.7893 -2.7820 14 6 0.3894 -6.3107 -2.6659 15 8 0.0363 -6.7148 -1.3415 16 6 0.1080 -8.1256 -1.1257 17 6 -0.2822 -8.4368 0.2962 18 1 -0.5571 -7.6370 0.9680 19 6 -0.2874 -9.7422 0.7398 20 7 0.0478 -10.7159 -0.0782 21 14 -0.7718 -10.1279 2.5021 22 1 -1.1032 -8.8663 3.2119 23 1 -1.9560 -11.0239 2.5052 24 1 0.3594 -10.8002 3.1906 25 6 2.0927 -2.5763 0.4342 26 16 2.2510 -0.9927 1.3652 27 1 -0.3633 -1.0274 -0.0234 28 1 -0.3633 0.4933 0.9016 29 1 -0.3633 0.5340 -0.8779 30 1 3.0960 1.4402 0.4832 31 1 1.4360 2.1292 0.4663 32 1 3.1257 2.2785 -1.7368 33 1 1.3450 2.1696 -1.8989 34 1 -0.7234 -4.4754 -2.4836 35 1 0.4593 -4.4888 -3.8137 36 1 -0.2857 -6.7805 -3.3813 37 1 1.4138 -6.6166 -2.8781 38 1 -0.5731 -8.6327 -1.8090 39 1 1.1264 -8.4694 -1.3061 40 1 0.0439 -11.6343 0.2337 41 1 2.8746 -3.2787 0.7226 42 1 1.1050 -3.0152 0.5755 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815180334.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:41 Heat of formation + Delta-G solvation = -144.878261 kcal Electronic energy + Delta-G solvation = -26303.181167 eV Core-core repulsion = 22375.530676 eV Total energy + Delta-G solvation = -3927.650491 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.29691 -40.10790 -37.46651 -37.07251 -36.10525 -34.64637 -32.81446 -30.77441 -30.55884 -29.78544 -27.01746 -25.91277 -25.46523 -22.78097 -22.33749 -21.86555 -21.35578 -19.53711 -18.10058 -17.88450 -16.90458 -16.66644 -16.45362 -16.15079 -16.10470 -15.32129 -15.05809 -14.85946 -14.46699 -14.35430 -14.23138 -13.99794 -13.73128 -13.54440 -13.17998 -13.10815 -12.87022 -12.81385 -12.56299 -12.14786 -11.94564 -11.57595 -11.51189 -11.48434 -11.10551 -10.96146 -10.90488 -10.77398 -10.47354 -10.43008 -10.18168 -10.08416 -9.32010 -9.16466 -8.93267 -8.26728 -8.25664 -6.16258 -4.18239 1.16042 1.52340 1.89232 2.04605 2.16845 2.81497 3.25869 3.32604 3.38553 3.55820 3.80271 4.04489 4.24607 4.27956 4.36452 4.43340 4.57975 4.68789 4.79954 4.99535 5.07444 5.15680 5.15821 5.20564 5.22131 5.23820 5.34410 5.37250 5.40814 5.64786 5.75493 5.80293 5.87129 6.00525 6.44221 6.60611 7.00528 7.34782 7.61326 7.72143 7.73786 8.07525 8.46319 8.94269 9.46823 10.95330 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.017850 B = 0.002849 C = 0.002563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.236113 B = 9825.697911 C =10923.329016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.171 3.829 3 C -0.108 4.108 4 C -0.139 4.139 5 C 0.549 3.451 6 O -0.507 6.507 7 N -0.608 5.608 8 C 0.165 3.835 9 H 0.128 0.872 10 C 0.445 3.555 11 O -0.491 6.491 12 O -0.338 6.338 13 C 0.076 3.924 14 C 0.062 3.938 15 O -0.391 6.391 16 C 0.194 3.806 17 C -0.515 4.515 18 H 0.067 0.933 19 C 0.056 3.944 20 N -0.898 5.898 21 Si 0.908 3.092 22 H -0.270 1.270 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.062 4.062 26 S -0.247 6.247 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.006 0.994 39 H 0.008 0.992 40 H 0.264 0.736 41 H 0.141 0.859 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.887 25.070 -0.015 25.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.025 4.025 3 C -0.147 4.147 4 C -0.180 4.180 5 C 0.338 3.662 6 O -0.379 6.379 7 N -0.347 5.347 8 C 0.059 3.941 9 H 0.146 0.854 10 C 0.284 3.716 11 O -0.377 6.377 12 O -0.253 6.253 13 C 0.002 3.998 14 C -0.016 4.016 15 O -0.311 6.311 16 C 0.120 3.880 17 C -0.553 4.553 18 H 0.085 0.915 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.735 3.265 22 H -0.194 1.194 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.210 4.210 26 S -0.017 6.017 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.024 0.976 39 H 0.025 0.975 40 H 0.074 0.926 41 H 0.159 0.841 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.277 25.198 0.285 25.747 hybrid contribution -0.763 -1.150 -0.605 1.507 sum 4.515 24.048 -0.320 24.470 Atomic orbital electron populations 1.22116 0.90259 1.04067 1.03497 1.24324 0.97083 0.95852 0.85264 1.22588 1.03303 0.92758 0.96067 1.22393 1.06218 0.94136 0.95230 1.21131 0.74870 0.86160 0.84089 1.90755 1.46454 1.84240 1.16479 1.49491 1.63073 1.04206 1.17974 1.20684 0.99527 0.79024 0.94846 0.85415 1.23835 0.83941 0.82130 0.81723 1.90673 1.39341 1.67874 1.39857 1.86582 1.56362 1.20001 1.62352 1.23262 0.91264 0.92547 0.92698 1.22321 0.99982 0.90605 0.88663 1.87903 1.89176 1.27882 1.26148 1.20248 0.95789 0.74714 0.97247 1.21068 1.45760 0.92727 0.95743 0.91459 1.24954 0.95274 0.95771 0.98517 1.69970 1.48312 0.99932 1.35504 0.86278 0.78144 0.78461 0.83609 1.19439 1.20823 1.20789 1.24587 1.09342 0.97453 0.89632 1.88403 1.81764 1.05156 1.26379 0.91377 0.89791 0.90744 0.88293 0.87982 0.86782 0.86935 0.90450 0.90352 0.91825 0.93086 0.97609 0.97462 0.92643 0.84129 0.86597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.31 37.16 0.35 -0.81 16 2 C 0.17 1.45 0.89 -66.64 -0.06 1.39 16 3 C -0.11 -0.59 6.34 -25.39 -0.16 -0.75 16 4 C -0.14 -0.88 6.80 -26.68 -0.18 -1.06 16 5 C 0.55 6.44 8.27 -10.31 -0.09 6.35 16 6 O -0.51 -8.18 18.03 5.55 0.10 -8.08 16 7 N -0.61 -6.75 2.35 -152.35 -0.36 -7.11 16 8 C 0.17 1.91 3.70 -68.14 -0.25 1.66 16 9 H 0.13 1.32 8.14 -51.93 -0.42 0.89 16 10 C 0.44 6.57 7.12 36.01 0.26 6.82 16 11 O -0.49 -8.39 16.04 -18.75 -0.30 -8.69 16 12 O -0.34 -5.38 10.02 -42.03 -0.42 -5.80 16 13 C 0.08 1.19 5.85 37.16 0.22 1.41 16 14 C 0.06 1.11 6.33 37.16 0.24 1.34 16 15 O -0.39 -9.16 10.30 -38.80 -0.40 -9.56 16 16 C 0.19 5.20 5.69 36.01 0.20 5.40 16 17 C -0.51 -14.86 9.43 -34.44 -0.32 -15.18 16 18 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -26.47 13.29 55.43 0.74 -25.74 16 21 Si 0.91 21.46 29.54 -169.99 -5.02 16.43 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 C -0.06 -0.62 6.92 37.91 0.26 -0.36 16 26 S -0.25 -2.32 22.33 -107.50 -2.40 -4.72 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.53 8.14 -51.92 -0.42 0.10 16 29 H 0.07 0.61 8.14 -51.94 -0.42 0.18 16 30 H 0.10 0.51 7.87 -51.93 -0.41 0.10 16 31 H 0.10 0.33 8.00 -51.93 -0.42 -0.09 16 32 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 1.23 8.13 -51.93 -0.42 0.81 16 35 H 0.08 1.08 8.13 -51.93 -0.42 0.65 16 36 H 0.06 1.04 8.14 -51.92 -0.42 0.61 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 39 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.14 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.12 1.28 7.78 -51.93 -0.40 0.88 16 LS Contribution 370.92 15.07 5.59 5.59 Total: -1.00 -35.83 370.92 -8.38 -44.22 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -6.27 Total: -4.26 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: 0.36 Total: 7.71 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.38 Total: -32.84 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -1.02 Total: -32.13 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -2.32 SS G_CDS: -2.40 Total: -4.72 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.83 -8.38 -44.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815180334.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.662 kcal (2) G-P(sol) polarization free energy of solvation -35.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds