Wall clock time and date at job start Tue Mar 31 2020 05:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53761 * 112.67232 * 2 1 4 4 C 1.55914 * 100.14485 * 90.89692 * 3 2 1 5 5 C 1.51130 * 104.67383 * 24.84928 * 4 3 2 6 6 O 1.21277 * 124.73574 * 171.57839 * 5 4 3 7 7 N 1.35831 * 110.52712 * 351.55815 * 5 4 3 8 8 C 1.46716 * 138.91331 * 164.44631 * 7 5 4 9 9 H 1.08997 * 108.52114 * 71.94247 * 8 7 5 10 10 C 1.50698 * 108.65685 * 314.03199 * 8 7 5 11 11 O 1.20828 * 120.00514 * 354.43270 * 10 8 7 12 12 O 1.34234 * 119.99833 * 174.43329 * 10 8 7 13 13 C 1.45198 * 116.99712 * 179.97438 * 12 10 8 14 14 C 1.52999 * 109.47012 * 180.02562 * 13 12 10 15 15 O 1.42898 * 109.47177 * 65.00158 * 14 13 12 16 16 C 1.42906 * 113.99821 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.46699 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00167 * 359.71972 * 17 16 15 19 19 C 1.37879 * 119.99394 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99424 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47474 * 90.00322 * 21 19 17 23 23 H 1.48507 * 109.46754 * 210.00056 * 21 19 17 24 24 H 1.48498 * 109.47278 * 329.99887 * 21 19 17 25 25 C 1.54410 * 113.64489 * 192.93772 * 8 7 5 26 26 S 1.83574 * 112.73885 * 234.41236 * 2 1 3 27 27 H 1.09000 * 109.46820 * 184.56994 * 1 2 3 28 28 H 1.08998 * 109.46593 * 304.57288 * 1 2 3 29 29 H 1.09003 * 109.46851 * 64.56888 * 1 2 3 30 30 H 1.08998 * 111.18971 * 208.35993 * 3 2 1 31 31 H 1.08998 * 111.18927 * 332.68829 * 3 2 1 32 32 H 1.09001 * 109.93687 * 266.22153 * 4 3 2 33 33 H 1.09002 * 110.80150 * 143.91820 * 4 3 2 34 34 H 1.09004 * 109.47520 * 60.00109 * 13 12 10 35 35 H 1.09000 * 109.47768 * 299.99799 * 13 12 10 36 36 H 1.09002 * 109.47235 * 304.99756 * 14 13 12 37 37 H 1.09000 * 109.47628 * 185.00158 * 14 13 12 38 38 H 1.09000 * 109.47490 * 59.99859 * 16 15 14 39 39 H 1.09001 * 109.47232 * 299.99213 * 16 15 14 40 40 H 0.96996 * 119.99730 * 179.97438 * 20 19 17 41 41 H 1.08998 * 110.99465 * 135.86316 * 25 8 7 42 42 H 1.09001 * 110.99578 * 259.65127 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1228 1.4188 0.0000 4 6 2.2508 1.6629 1.5346 5 6 2.3491 0.2797 2.1354 6 8 2.6062 0.0478 3.2977 7 7 2.1087 -0.6675 1.1920 8 6 2.2911 -2.1110 1.0027 9 1 1.5791 -2.6364 1.6390 10 6 3.6865 -2.4814 1.4350 11 8 4.4684 -1.6183 1.7568 12 8 4.0606 -3.7702 1.4626 13 6 5.4195 -4.0531 1.8889 14 6 5.6604 -5.5636 1.8555 15 8 5.5828 -6.0287 0.5066 16 6 5.7938 -7.4348 0.3636 17 6 5.6895 -7.8129 -1.0915 18 1 5.4783 -7.0560 -1.8323 19 6 5.8585 -9.1261 -1.4763 20 7 6.1103 -10.0487 -0.5735 21 14 5.7299 -9.5947 -3.2800 22 1 7.0693 -9.4965 -3.9138 23 1 5.2288 -10.9879 -3.3949 24 1 4.7893 -8.6722 -3.9652 25 6 2.0863 -2.5750 -0.4558 26 16 2.2396 -0.9853 -1.3768 27 1 -0.3633 -1.0244 0.0819 28 1 -0.3632 0.5832 0.8462 29 1 -0.3633 0.4413 -0.9281 30 1 3.0998 1.4376 -0.4827 31 1 1.4414 2.1304 -0.4663 32 1 1.3634 2.1766 1.9045 33 1 3.1466 2.2411 1.7612 34 1 5.5663 -3.6837 2.9038 35 1 6.1214 -3.5587 1.2172 36 1 4.9028 -6.0657 2.4572 37 1 6.6489 -5.7829 2.2591 38 1 5.0387 -7.9755 0.9342 39 1 6.7850 -7.6933 0.7363 40 1 6.2288 -10.9726 -0.8443 41 1 2.8649 -3.2765 -0.7554 42 1 1.0969 -3.0117 -0.5914 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815180335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:45 Heat of formation + Delta-G solvation = -143.408731 kcal Electronic energy + Delta-G solvation = -26254.115974 eV Core-core repulsion = 22326.529207 eV Total energy + Delta-G solvation = -3927.586768 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.25013 -40.05346 -37.40347 -37.07485 -36.09001 -34.58719 -32.80241 -30.79266 -30.53959 -29.76067 -27.00327 -25.95022 -25.42474 -22.78189 -22.33113 -21.84688 -21.32293 -19.46823 -18.16439 -17.72182 -16.97273 -16.67122 -16.41135 -16.26979 -15.79517 -15.24151 -15.05531 -14.78206 -14.68654 -14.33926 -14.23772 -13.92132 -13.72678 -13.58111 -13.35662 -12.98795 -12.87931 -12.75816 -12.48999 -12.41058 -11.97557 -11.51543 -11.47761 -11.42623 -10.98984 -10.88091 -10.81635 -10.71395 -10.54331 -10.44311 -10.16017 -10.08797 -9.27960 -9.16681 -8.91496 -8.25261 -8.20450 -6.15058 -4.17057 1.17168 1.58506 1.86214 2.10764 2.31352 2.69214 3.27937 3.33086 3.38040 3.62016 3.82687 4.07808 4.20063 4.29049 4.40516 4.42341 4.62482 4.70884 4.79897 4.93798 5.04756 5.09590 5.18374 5.18409 5.21119 5.21615 5.37144 5.40975 5.43785 5.55154 5.69434 5.82504 5.89522 6.02708 6.47204 6.64054 7.01841 7.36092 7.64215 7.74406 7.78256 8.08810 8.47923 8.95228 9.47879 10.96476 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018260 B = 0.002832 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.043954 B = 9885.655367 C =10998.684158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.169 3.831 3 C -0.108 4.108 4 C -0.139 4.139 5 C 0.554 3.446 6 O -0.504 6.504 7 N -0.615 5.615 8 C 0.167 3.833 9 H 0.122 0.878 10 C 0.450 3.550 11 O -0.488 6.488 12 O -0.338 6.338 13 C 0.076 3.924 14 C 0.062 3.938 15 O -0.391 6.391 16 C 0.194 3.806 17 C -0.516 4.516 18 H 0.067 0.933 19 C 0.056 3.944 20 N -0.898 5.898 21 Si 0.908 3.092 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.271 1.271 25 C -0.067 4.067 26 S -0.247 6.247 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.007 0.993 39 H 0.006 0.994 40 H 0.265 0.735 41 H 0.140 0.860 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.057 23.114 2.319 26.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.027 4.027 3 C -0.147 4.147 4 C -0.180 4.180 5 C 0.343 3.657 6 O -0.377 6.377 7 N -0.355 5.355 8 C 0.061 3.939 9 H 0.139 0.861 10 C 0.290 3.710 11 O -0.374 6.374 12 O -0.254 6.254 13 C 0.003 3.997 14 C -0.015 4.015 15 O -0.311 6.311 16 C 0.120 3.880 17 C -0.554 4.554 18 H 0.085 0.915 19 C -0.145 4.145 20 N -0.537 5.537 21 Si 0.735 3.265 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.196 1.196 25 C -0.216 4.216 26 S -0.017 6.017 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.120 0.880 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.025 0.975 39 H 0.024 0.976 40 H 0.074 0.926 41 H 0.158 0.842 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.128 23.302 1.917 26.339 hybrid contribution -0.127 -1.081 0.470 1.186 sum -12.256 22.221 2.387 25.488 Atomic orbital electron populations 1.22142 0.90229 1.03851 1.03733 1.24397 0.96774 0.96092 0.85441 1.22771 1.03302 0.92702 0.95951 1.22546 1.06072 0.94227 0.95196 1.21044 0.74189 0.86159 0.84349 1.90737 1.46425 1.84059 1.16430 1.49575 1.63905 1.05008 1.17058 1.20663 0.93301 0.81277 0.98642 0.86052 1.23467 0.90274 0.81835 0.75435 1.90677 1.53185 1.50307 1.43266 1.86549 1.34106 1.26414 1.78331 1.23266 0.79475 0.96890 1.00077 1.22321 1.00110 0.90883 0.88227 1.87906 1.93043 1.27953 1.22223 1.20244 0.95105 0.74804 0.97812 1.21035 1.48811 0.93512 0.92013 0.91514 1.24951 0.95077 0.95937 0.98513 1.69958 1.48599 1.01712 1.33470 0.86329 0.78509 0.77659 0.83959 1.20438 1.21048 1.19579 1.24674 1.09106 0.97866 0.89961 1.88582 1.82788 1.05183 1.25191 0.91153 0.90902 0.89599 0.88377 0.88005 0.87214 0.86786 0.90326 0.90368 0.93102 0.91792 0.97477 0.97600 0.92593 0.84234 0.86017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 9.31 37.16 0.35 -0.40 16 2 C 0.17 1.36 0.86 -66.50 -0.06 1.30 16 3 C -0.11 -0.67 6.43 -24.78 -0.16 -0.83 16 4 C -0.14 -0.98 6.83 -26.12 -0.18 -1.16 16 5 C 0.55 6.77 7.27 -10.30 -0.07 6.70 16 6 O -0.50 -8.37 17.80 5.38 0.10 -8.27 16 7 N -0.62 -6.85 2.78 -152.27 -0.42 -7.27 16 8 C 0.17 1.93 3.69 -68.23 -0.25 1.68 16 9 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 10 C 0.45 6.97 7.08 36.00 0.25 7.23 16 11 O -0.49 -8.82 15.08 -20.11 -0.30 -9.12 16 12 O -0.34 -5.58 9.89 -42.04 -0.42 -6.00 16 13 C 0.08 1.24 5.84 37.16 0.22 1.46 16 14 C 0.06 1.13 6.33 37.16 0.24 1.37 16 15 O -0.39 -9.32 10.30 -38.80 -0.40 -9.72 16 16 C 0.19 5.26 5.69 36.01 0.20 5.46 16 17 C -0.52 -15.01 9.43 -34.44 -0.32 -15.33 16 18 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -26.61 13.29 55.43 0.74 -25.87 16 21 Si 0.91 21.60 29.54 -169.99 -5.02 16.58 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 C -0.07 -0.68 7.06 37.90 0.27 -0.41 16 26 S -0.25 -2.55 22.30 -107.50 -2.40 -4.94 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.10 0.73 7.87 -51.93 -0.41 0.32 16 31 H 0.10 0.34 8.01 -51.93 -0.42 -0.08 16 32 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.12 8.13 -51.93 -0.42 0.70 16 35 H 0.08 1.30 8.13 -51.93 -0.42 0.88 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 39 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.14 1.64 7.51 -51.93 -0.39 1.25 16 42 H 0.12 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 368.92 15.07 5.56 5.56 Total: -1.00 -36.69 368.92 -8.44 -45.13 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -6.25 Total: -4.65 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: 0.38 Total: 8.58 kcal Atomic # 7 Polarization: -33.46 SS G_CDS: 0.31 Total: -33.14 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -1.02 Total: -33.11 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -2.55 SS G_CDS: -2.40 Total: -4.94 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.69 -8.44 -45.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815180335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.281 kcal (2) G-P(sol) polarization free energy of solvation -36.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds