Wall clock time and date at job start Tue Mar 31 2020 05:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53773 * 112.66880 * 2 1 4 4 C 1.54865 * 100.61439 * 270.18910 * 3 2 1 5 5 C 1.50838 * 104.26023 * 333.87807 * 4 3 2 6 6 O 1.21284 * 124.55026 * 188.87022 * 5 4 3 7 7 N 1.35828 * 110.70424 * 9.86777 * 5 4 3 8 8 C 1.46720 * 138.91209 * 194.53988 * 7 5 4 9 9 H 1.08996 * 108.65722 * 287.97203 * 8 7 5 10 10 C 1.50692 * 108.65707 * 45.95719 * 8 7 5 11 11 O 1.20829 * 120.00367 * 2.67848 * 10 8 7 12 12 O 1.34230 * 120.00058 * 182.67055 * 10 8 7 13 13 C 1.45201 * 117.00252 * 180.02562 * 12 10 8 14 14 C 1.53006 * 109.47057 * 180.02562 * 13 12 10 15 15 O 1.42904 * 109.46946 * 64.99988 * 14 13 12 16 16 C 1.42901 * 113.99537 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.46890 * 180.02562 * 16 15 14 18 18 H 1.08006 * 120.00159 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00120 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00089 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99938 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 269.99556 * 21 19 17 23 23 H 1.48503 * 109.47261 * 149.99737 * 21 19 17 24 24 H 1.48500 * 109.47454 * 29.99730 * 21 19 17 25 25 C 1.54414 * 113.50931 * 166.96814 * 8 7 5 26 26 S 1.83562 * 112.74268 * 126.38298 * 2 1 3 27 27 H 1.09003 * 109.47133 * 178.45448 * 1 2 3 28 28 H 1.09010 * 109.47076 * 298.44776 * 1 2 3 29 29 H 1.09001 * 109.47529 * 58.44564 * 1 2 3 30 30 H 1.08996 * 111.18580 * 28.02615 * 3 2 1 31 31 H 1.08997 * 111.18536 * 152.30397 * 3 2 1 32 32 H 1.08992 * 110.45385 * 93.14864 * 4 3 2 33 33 H 1.09006 * 110.45022 * 215.69793 * 4 3 2 34 34 H 1.08993 * 109.46786 * 60.00332 * 13 12 10 35 35 H 1.08994 * 109.47006 * 299.99837 * 13 12 10 36 36 H 1.08996 * 109.47172 * 305.00171 * 14 13 12 37 37 H 1.08997 * 109.46636 * 184.99646 * 14 13 12 38 38 H 1.09003 * 109.46905 * 60.00448 * 16 15 14 39 39 H 1.08996 * 109.47465 * 299.99930 * 16 15 14 40 40 H 0.96998 * 119.99255 * 0.02562 * 20 19 17 41 41 H 1.08997 * 110.99494 * 100.40580 * 25 8 7 42 42 H 1.08995 * 110.98934 * 224.23142 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1226 1.4189 0.0000 4 6 2.2279 1.6841 -1.5221 5 6 2.3492 0.3095 -2.1312 6 8 2.6069 0.0938 -3.2966 7 7 2.1087 -0.6508 -1.2012 8 6 2.2910 -2.0967 -1.0320 9 1 1.5788 -2.6154 -1.6737 10 6 3.6861 -2.4612 -1.4697 11 8 4.4514 -1.5981 -1.8294 12 8 4.0788 -3.7448 -1.4599 13 6 5.4364 -4.0222 -1.8940 14 6 5.6994 -5.5274 -1.8155 15 8 4.8576 -6.2073 -2.7489 16 6 5.0256 -7.6264 -2.7564 17 6 4.0946 -8.2370 -3.7721 18 1 3.4398 -7.6047 -4.3534 19 6 4.0779 -9.6030 -3.9585 20 7 4.8748 -10.3731 -3.2503 21 14 2.9245 -10.3598 -5.2180 22 1 1.6274 -10.6823 -4.5706 23 1 3.5299 -11.6029 -5.7597 24 1 2.6991 -9.3959 -6.3249 25 6 2.0877 -2.5773 0.4213 26 16 2.2396 -1.0042 1.3629 27 1 -0.3633 -1.0273 -0.0277 28 1 -0.3634 0.4896 0.9037 29 1 -0.3634 0.5378 -0.8757 30 1 1.4466 2.1282 0.4775 31 1 3.1048 1.4356 0.4724 32 1 1.3342 2.1931 -1.8828 33 1 3.1184 2.2717 -1.7457 34 1 6.1390 -3.4961 -1.2478 35 1 5.5652 -3.6844 -2.9222 36 1 5.4844 -5.8817 -0.8074 37 1 6.7437 -5.7267 -2.0558 38 1 4.7969 -8.0245 -1.7678 39 1 6.0559 -7.8690 -3.0165 40 1 5.4740 -9.9800 -2.5967 41 1 1.0985 -3.0157 0.5528 42 1 2.8671 -3.2815 0.7123 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815180336.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:49 Heat of formation + Delta-G solvation = -146.383653 kcal Electronic energy + Delta-G solvation = -26225.423253 eV Core-core repulsion = 22297.707483 eV Total energy + Delta-G solvation = -3927.715770 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.31838 -40.12097 -37.44277 -37.18224 -36.20019 -34.68538 -33.07627 -30.82977 -30.61050 -29.81618 -26.53458 -25.97696 -25.46892 -22.82426 -22.54701 -21.89543 -21.39235 -19.51577 -18.22319 -17.76612 -17.09476 -17.04645 -16.55941 -16.41978 -15.78704 -15.45993 -15.11265 -14.76404 -14.71713 -14.34077 -14.01625 -13.88722 -13.76234 -13.60423 -13.47635 -13.07510 -12.96727 -12.81094 -12.60229 -12.45484 -11.91175 -11.77529 -11.54308 -11.53153 -11.33881 -10.79963 -10.76490 -10.67525 -10.59878 -10.33326 -10.17361 -10.12285 -9.31201 -8.96946 -8.68130 -8.33145 -8.30922 -6.50434 -4.19317 1.06742 1.46997 1.85213 2.05074 2.28162 2.65493 3.40908 3.45387 3.54718 3.62072 3.76930 4.02932 4.14629 4.31286 4.37370 4.40604 4.59499 4.63728 4.74716 4.87189 4.97391 5.04604 5.07342 5.08976 5.14896 5.27601 5.32196 5.33657 5.39007 5.51594 5.63895 5.68964 5.77658 5.91681 6.40501 6.62645 6.66802 7.05486 7.60648 7.76595 7.80765 8.11041 8.58096 8.75387 9.51097 10.89953 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018724 B = 0.002580 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.033209 B =10849.207997 C =10910.116963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.172 3.828 3 C -0.109 4.109 4 C -0.139 4.139 5 C 0.552 3.448 6 O -0.499 6.499 7 N -0.616 5.616 8 C 0.166 3.834 9 H 0.126 0.874 10 C 0.451 3.549 11 O -0.487 6.487 12 O -0.339 6.339 13 C 0.077 3.923 14 C 0.060 3.940 15 O -0.382 6.382 16 C 0.185 3.815 17 C -0.597 4.597 18 H 0.061 0.939 19 C 0.017 3.983 20 N -0.911 5.911 21 Si 1.082 2.918 22 H -0.285 1.285 23 H -0.282 1.282 24 H -0.286 1.286 25 C -0.067 4.067 26 S -0.250 6.250 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.051 0.949 37 H 0.064 0.936 38 H -0.002 1.002 39 H -0.004 1.004 40 H 0.267 0.733 41 H 0.122 0.878 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.456 25.042 12.149 29.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.024 4.024 3 C -0.148 4.148 4 C -0.181 4.181 5 C 0.340 3.660 6 O -0.370 6.370 7 N -0.356 5.356 8 C 0.060 3.940 9 H 0.143 0.857 10 C 0.291 3.709 11 O -0.373 6.373 12 O -0.255 6.255 13 C 0.003 3.997 14 C -0.018 4.018 15 O -0.301 6.301 16 C 0.111 3.889 17 C -0.635 4.635 18 H 0.080 0.920 19 C -0.186 4.186 20 N -0.547 5.547 21 Si 0.909 3.091 22 H -0.212 1.212 23 H -0.208 1.208 24 H -0.212 1.212 25 C -0.216 4.216 26 S -0.021 6.021 27 H 0.089 0.911 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.015 0.985 39 H 0.014 0.986 40 H 0.077 0.923 41 H 0.140 0.860 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.131 23.961 11.598 27.834 hybrid contribution 0.600 0.879 -0.144 1.074 sum -7.531 24.840 11.454 28.371 Atomic orbital electron populations 1.22149 0.90137 1.03984 1.03746 1.24399 0.96830 0.96042 0.85112 1.22591 1.03282 0.92673 0.96246 1.22343 1.06188 0.94437 0.95083 1.20985 0.74478 0.85955 0.84549 1.90767 1.45953 1.84296 1.15994 1.49565 1.64010 1.04787 1.17278 1.20675 0.93437 0.81365 0.98542 0.85677 1.23462 0.90102 0.81686 0.75698 1.90683 1.54166 1.50046 1.42445 1.86542 1.34272 1.26988 1.77673 1.23235 0.79135 0.96276 1.01025 1.22367 0.95101 0.89584 0.94721 1.87962 1.61376 1.22217 1.58576 1.20330 0.96266 0.75665 0.96634 1.21925 1.24152 0.94394 1.23045 0.92044 1.25954 0.99112 0.93363 1.00162 1.70781 1.22425 1.38427 1.23069 0.83366 0.75114 0.75584 0.75064 1.21183 1.20801 1.21196 1.24596 1.08873 0.97861 0.90250 1.88393 1.83015 1.05309 1.25363 0.91089 0.89631 0.90765 0.88081 0.88457 0.86939 0.86848 0.90193 0.90309 0.93108 0.91794 0.98470 0.98591 0.92295 0.85985 0.84842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 9.30 37.16 0.35 -0.37 16 2 C 0.17 1.30 0.88 -66.50 -0.06 1.24 16 3 C -0.11 -0.62 6.35 -25.35 -0.16 -0.78 16 4 C -0.14 -0.97 6.79 -26.83 -0.18 -1.15 16 5 C 0.55 6.91 7.23 -10.44 -0.08 6.83 16 6 O -0.50 -8.70 17.70 3.39 0.06 -8.64 16 7 N -0.62 -6.85 2.79 -152.40 -0.43 -7.27 16 8 C 0.17 1.92 3.71 -68.23 -0.25 1.66 16 9 H 0.13 1.35 8.14 -51.93 -0.42 0.92 16 10 C 0.45 6.98 7.15 36.00 0.26 7.24 16 11 O -0.49 -8.81 14.95 -21.11 -0.32 -9.12 16 12 O -0.34 -5.60 9.77 -42.02 -0.41 -6.01 16 13 C 0.08 1.25 5.85 37.16 0.22 1.46 16 14 C 0.06 1.09 6.33 37.16 0.24 1.33 16 15 O -0.38 -9.36 10.30 -38.80 -0.40 -9.76 16 16 C 0.19 5.06 5.00 36.01 0.18 5.24 16 17 C -0.60 -17.91 9.43 -34.44 -0.32 -18.23 16 18 H 0.06 1.86 7.81 -52.48 -0.41 1.45 16 19 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 20 N -0.91 -27.89 13.65 55.43 0.76 -27.14 16 21 Si 1.08 25.61 29.90 -169.99 -5.08 20.53 16 22 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 25 C -0.07 -0.58 7.02 37.90 0.27 -0.32 16 26 S -0.25 -2.22 22.34 -107.50 -2.40 -4.62 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.30 8.14 -51.92 -0.42 -0.12 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.10 0.29 8.01 -51.93 -0.42 -0.13 16 31 H 0.10 0.65 7.90 -51.93 -0.41 0.24 16 32 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 1.09 8.13 -51.93 -0.42 0.66 16 35 H 0.08 1.37 8.13 -51.93 -0.42 0.94 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.00 -0.07 8.01 -51.93 -0.42 -0.48 16 39 H 0.00 -0.10 8.01 -51.93 -0.42 -0.51 16 40 H 0.27 8.09 7.22 -40.82 -0.29 7.79 16 41 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.13 1.21 7.43 -51.93 -0.39 0.83 16 LS Contribution 367.15 15.07 5.53 5.53 Total: -1.00 -38.47 367.15 -8.53 -47.00 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: -6.19 Total: -5.05 kcal Atomic # 6 Polarization: 4.21 SS G_CDS: 0.35 Total: 4.56 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: 0.33 Total: -34.41 kcal Atomic # 8 Polarization: -32.47 SS G_CDS: -1.07 Total: -33.53 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.08 Total: 20.53 kcal Atomic # 16 Polarization: -2.22 SS G_CDS: -2.40 Total: -4.62 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.47 -8.53 -47.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815180336.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.386 kcal (2) G-P(sol) polarization free energy of solvation -38.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds