Wall clock time and date at job start Tue Mar 31 2020 06:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28446 * 125.18886 * 2 1 4 4 C 1.30861 * 110.92297 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.06722 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46859 * 254.96893 * 5 4 3 7 7 C 1.53001 * 109.47170 * 14.97138 * 5 4 3 8 8 C 1.53002 * 109.47203 * 134.97534 * 5 4 3 9 9 C 1.39678 * 107.86411 * 359.77148 * 4 3 2 10 10 C 1.36598 * 125.18889 * 179.97438 * 2 1 3 11 11 C 1.47161 * 126.88530 * 359.97438 * 10 2 1 12 12 O 1.21632 * 119.99947 * 4.87026 * 11 10 2 13 13 N 1.34771 * 120.00223 * 184.87701 * 11 10 2 14 14 S 1.65602 * 120.00340 * 174.59679 * 13 11 10 15 15 O 1.42099 * 104.27988 * 181.06937 * 14 13 11 16 16 O 1.42095 * 104.27907 * 308.93426 * 14 13 11 17 17 C 1.81405 * 104.44696 * 65.00254 * 14 13 11 18 18 C 1.50695 * 109.47272 * 180.02562 * 17 14 13 19 19 H 1.08003 * 120.00005 * 359.97438 * 18 17 14 20 20 C 1.37880 * 119.99845 * 179.97438 * 18 17 14 21 21 N 1.31507 * 120.00386 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99475 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47257 * 90.00479 * 22 20 18 24 24 H 1.48501 * 109.46585 * 209.99886 * 22 20 18 25 25 H 1.48493 * 109.47208 * 330.00095 * 22 20 18 26 26 H 1.09007 * 109.47198 * 264.18416 * 1 2 3 27 27 H 1.09007 * 109.47333 * 24.17917 * 1 2 3 28 28 H 1.08996 * 109.47615 * 144.18070 * 1 2 3 29 29 H 1.09004 * 109.46691 * 60.00345 * 6 5 4 30 30 H 1.09003 * 109.47054 * 179.97438 * 6 5 4 31 31 H 1.08998 * 109.47359 * 299.99802 * 6 5 4 32 32 H 1.08993 * 109.46843 * 60.00171 * 7 5 4 33 33 H 1.09003 * 109.46794 * 179.97438 * 7 5 4 34 34 H 1.08997 * 109.46583 * 300.00047 * 7 5 4 35 35 H 1.08998 * 109.47648 * 59.99810 * 8 5 4 36 36 H 1.09003 * 109.46746 * 180.02562 * 8 5 4 37 37 H 1.09001 * 109.47172 * 299.99694 * 8 5 4 38 38 H 1.07999 * 127.32267 * 180.27256 * 9 4 3 39 39 H 0.97003 * 120.00097 * 354.60270 * 13 11 10 40 40 H 1.09003 * 109.46935 * 300.00023 * 17 14 13 41 41 H 1.08995 * 109.47053 * 59.99715 * 17 14 13 42 42 H 0.96998 * 120.00603 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2052 1.0497 0.0000 4 6 3.4734 0.7273 0.0005 5 6 4.6335 1.6892 0.0013 6 6 5.2655 1.7270 -1.3916 7 6 4.1364 3.0874 0.3739 8 6 5.6764 1.2298 1.0221 9 6 3.5611 -0.6667 0.0062 10 6 2.2522 -1.1164 0.0005 11 6 1.7992 -2.5165 0.0017 12 8 0.6134 -2.7722 -0.0872 13 7 2.6983 -3.5156 0.1013 14 16 2.1825 -5.0833 0.2374 15 8 3.3813 -5.8387 0.3439 16 8 1.2398 -5.0511 1.3002 17 6 1.3527 -5.4253 -1.3391 18 6 0.8328 -6.8397 -1.3368 19 1 0.9866 -7.4701 -0.4734 20 6 0.1609 -7.3290 -2.4368 21 7 -0.0267 -6.5613 -3.4879 22 14 -0.4829 -9.0826 -2.4341 23 1 -1.8652 -9.1016 -1.8916 24 1 -0.4887 -9.6098 -3.8223 25 1 0.3933 -9.9303 -1.5863 26 1 -0.3634 -0.1041 1.0224 27 1 -0.3634 0.9375 -0.4209 28 1 -0.3634 -0.8332 -0.6014 29 1 4.5225 2.0543 -2.1189 30 1 6.1043 2.4231 -1.3913 31 1 5.6197 0.7309 -1.6571 32 1 3.6862 3.0604 1.3662 33 1 4.9756 3.7831 0.3749 34 1 3.3934 3.4146 -0.3534 35 1 6.0306 0.2337 0.7567 36 1 6.5152 1.9259 1.0229 37 1 5.2262 1.2028 2.0145 38 1 4.4593 -1.2663 0.0122 39 1 3.6476 -3.3163 0.0933 40 1 0.5209 -4.7330 -1.4695 41 1 2.0616 -5.2997 -2.1575 42 1 -0.4998 -6.9054 -4.2617 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821582217.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:32 Heat of formation + Delta-G solvation = -48.487080 kcal Electronic energy + Delta-G solvation = -26463.261505 eV Core-core repulsion = 22572.083601 eV Total energy + Delta-G solvation = -3891.177905 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.76345 -39.59449 -37.21962 -36.33553 -35.28147 -34.48243 -33.39524 -32.66003 -31.00166 -29.10412 -27.55193 -27.43983 -26.93709 -24.10934 -23.50077 -22.41268 -20.90731 -19.61636 -18.76829 -17.82322 -17.27892 -16.58306 -16.47615 -16.17986 -15.66013 -15.20276 -14.85885 -14.57192 -14.48998 -14.31997 -14.20025 -14.13670 -13.69164 -12.93407 -12.68652 -12.55775 -12.39379 -12.34390 -12.22896 -12.02092 -11.85184 -11.51875 -11.50780 -11.38840 -11.29712 -11.25233 -11.17261 -10.94471 -10.73892 -10.65206 -10.61172 -10.29097 -9.86016 -9.29542 -9.21280 -9.00633 -8.74123 -6.36494 -4.48114 0.90215 1.04025 2.30513 2.39103 2.91442 3.10523 3.20148 3.25672 3.30831 4.03802 4.18618 4.23626 4.48393 4.55635 4.78907 4.79766 4.92179 5.02615 5.05866 5.11171 5.13681 5.15906 5.31493 5.38022 5.42427 5.48593 5.58748 5.59543 5.70553 5.73223 5.83525 5.90514 6.11086 6.14575 6.31788 6.51437 6.59896 6.70236 6.86553 7.37183 7.50965 7.70211 7.94647 8.52980 9.19532 10.75169 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.021010 B = 0.003076 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.369698 B = 9099.938048 C = 9424.425486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.253 5.253 3 N -0.266 5.266 4 C 0.034 3.966 5 C 0.018 3.982 6 C -0.138 4.138 7 C -0.134 4.134 8 C -0.139 4.139 9 C -0.176 4.176 10 C -0.039 4.039 11 C 0.616 3.384 12 O -0.489 6.489 13 N -1.047 6.047 14 S 2.553 3.447 15 O -0.963 6.963 16 O -0.951 6.951 17 C -0.401 4.401 18 C -0.536 4.536 19 H 0.071 0.929 20 C 0.078 3.922 21 N -0.877 5.877 22 Si 0.907 3.093 23 H -0.273 1.273 24 H -0.280 1.280 25 H -0.266 1.266 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.112 0.888 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.057 0.943 38 H 0.162 0.838 39 H 0.427 0.573 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.909 18.217 4.391 20.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.041 5.041 3 N -0.100 5.100 4 C -0.122 4.122 5 C 0.016 3.984 6 C -0.196 4.196 7 C -0.192 4.192 8 C -0.197 4.197 9 C -0.205 4.205 10 C -0.169 4.169 11 C 0.401 3.599 12 O -0.361 6.361 13 N -0.806 5.806 14 S 2.656 3.344 15 O -0.954 6.954 16 O -0.941 6.941 17 C -0.539 4.539 18 C -0.576 4.576 19 H 0.089 0.911 20 C -0.129 4.129 21 N -0.512 5.512 22 Si 0.733 3.267 23 H -0.198 1.198 24 H -0.206 1.206 25 H -0.190 1.190 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.131 0.869 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.179 0.821 39 H 0.261 0.739 40 H 0.119 0.881 41 H 0.104 0.896 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.189 18.443 4.982 20.412 hybrid contribution 0.439 -1.222 -0.665 1.459 sum 7.628 17.221 4.317 19.323 Atomic orbital electron populations 1.22435 0.72080 1.06003 1.05294 1.45600 1.07958 1.01510 1.49009 1.73119 1.03682 1.13228 1.19931 1.21818 0.91617 0.93084 1.05644 1.18905 0.90118 0.92810 0.96583 1.21877 1.00413 1.02319 0.94985 1.21760 1.00893 0.94514 1.02002 1.21889 0.97780 1.01634 0.98430 1.22069 0.95495 0.95017 1.07920 1.21284 0.91568 0.89332 1.14672 1.16716 0.85212 0.83738 0.74246 1.90991 1.15165 1.84302 1.45612 1.55340 1.17872 1.27261 1.80081 1.07264 0.75227 0.71151 0.80797 1.93532 1.46906 1.66639 1.88302 1.93531 1.63331 1.83523 1.53744 1.27607 1.08583 1.06988 1.10676 1.20286 1.39770 0.93981 1.03532 0.91076 1.24917 0.94570 0.98754 0.94627 1.69949 1.39603 1.36599 1.05071 0.86334 0.79722 0.82848 0.77832 1.19824 1.20565 1.19031 0.89403 0.88554 0.86938 0.92460 0.91956 0.92104 0.92550 0.92497 0.92042 0.92019 0.91891 0.92375 0.82063 0.73873 0.88109 0.89555 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.91 10.70 59.85 0.64 1.55 16 2 N -0.25 -3.45 3.75 -63.88 -0.24 -3.69 16 3 N -0.27 -3.48 11.23 33.64 0.38 -3.10 16 4 C 0.03 0.40 5.65 -82.47 -0.47 -0.07 16 5 C 0.02 0.15 0.97 -155.66 -0.15 0.00 16 6 C -0.14 -1.07 8.46 37.16 0.31 -0.76 16 7 C -0.13 -1.11 8.04 37.16 0.30 -0.81 16 8 C -0.14 -1.02 8.20 37.16 0.30 -0.72 16 9 C -0.18 -2.08 9.78 -38.98 -0.38 -2.46 16 10 C -0.04 -0.55 6.96 -82.06 -0.57 -1.13 16 11 C 0.62 10.37 7.52 -12.64 -0.10 10.27 16 12 O -0.49 -9.64 12.80 -9.99 -0.13 -9.76 16 13 N -1.05 -16.82 5.59 30.37 0.17 -16.65 16 14 S 2.55 54.12 5.02 -107.50 -0.54 53.58 16 15 O -0.96 -21.48 18.08 -57.54 -1.04 -22.52 16 16 O -0.95 -23.02 17.17 -64.23 -1.10 -24.12 16 17 C -0.40 -9.79 5.62 36.00 0.20 -9.59 16 18 C -0.54 -14.78 9.13 -34.44 -0.31 -15.10 16 19 H 0.07 1.91 7.71 -52.48 -0.40 1.50 16 20 C 0.08 2.15 5.46 -17.82 -0.10 2.05 16 21 N -0.88 -24.75 13.29 55.43 0.74 -24.01 16 22 Si 0.91 20.88 29.54 -169.99 -5.02 15.85 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 26 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.11 1.38 6.56 -51.93 -0.34 1.04 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 35 H 0.06 0.42 7.59 -51.93 -0.39 0.02 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.16 1.41 7.30 -52.49 -0.38 1.03 16 39 H 0.43 5.05 7.82 -34.47 -0.27 4.78 16 40 H 0.10 2.56 6.98 -51.92 -0.36 2.19 16 41 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 42 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 366.05 15.07 5.52 5.52 Total: -1.00 -35.32 366.05 -7.52 -42.85 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -5.94 Total: 2.80 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -0.31 Total: -16.75 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 1.04 Total: -47.45 kcal Atomic # 8 Polarization: -54.13 SS G_CDS: -2.27 Total: -56.40 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 54.12 SS G_CDS: -0.54 Total: 53.58 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.32 -7.52 -42.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821582217.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.640 kcal (2) G-P(sol) polarization free energy of solvation -35.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds