Wall clock time and date at job start Tue Mar 31 2020 05:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99972 * 2 1 4 4 H 1.48507 * 109.47218 * 240.00114 * 3 2 1 5 5 H 1.48500 * 109.47275 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47251 * 120.00241 * 3 2 1 7 7 C 1.37876 * 119.99673 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99579 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00304 * 0.02562 * 7 2 1 10 10 S 1.81391 * 109.47289 * 180.02562 * 9 7 2 11 11 O 1.42102 * 110.54610 * 68.37385 * 10 9 7 12 12 O 1.42110 * 110.54263 * 291.62265 * 10 9 7 13 13 N 1.65602 * 104.45199 * 180.02562 * 10 9 7 14 14 C 1.34773 * 119.99998 * 64.99361 * 13 10 9 15 15 O 1.21278 * 120.00288 * 0.02562 * 14 13 10 16 16 C 1.52082 * 119.99962 * 180.02562 * 14 13 10 17 17 C 1.51997 * 107.91012 * 303.65938 * 16 14 13 18 18 C 1.52608 * 113.11338 * 191.51181 * 17 16 14 19 19 H 1.10269 * 109.93657 * 172.04173 * 18 17 16 20 20 C 1.52557 * 111.17188 * 294.05463 * 18 17 16 21 21 C 1.51666 * 113.59510 * 67.60916 * 20 18 17 22 22 C 1.51683 * 114.97087 * 46.12867 * 21 20 18 23 23 C 1.52599 * 113.40939 * 313.51927 * 22 21 20 24 24 H 1.10262 * 109.94485 * 170.98106 * 23 22 21 25 25 C 1.51973 * 107.91950 * 180.02562 * 16 14 13 26 26 C 1.51806 * 108.02139 * 51.51048 * 23 22 21 27 27 O 1.20518 * 123.04495 * 119.44651 * 26 23 22 28 28 H 0.97005 * 120.00045 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47083 * 59.99686 * 9 7 2 30 30 H 1.09001 * 109.47048 * 300.00127 * 9 7 2 31 31 H 0.97000 * 119.99874 * 245.00042 * 13 10 9 32 32 H 1.08998 * 106.27666 * 61.79929 * 16 14 13 33 33 H 1.09786 * 109.04957 * 69.91575 * 17 16 14 34 34 H 1.09782 * 109.04313 * 313.09544 * 17 16 14 35 35 H 1.09912 * 108.96036 * 305.76979 * 20 18 17 36 36 H 1.09914 * 108.96469 * 189.45631 * 20 18 17 37 37 H 1.08655 * 111.20166 * 278.72150 * 21 20 18 38 38 H 1.11251 * 107.06978 * 164.90606 * 21 20 18 39 39 H 1.09872 * 109.14070 * 191.80842 * 22 21 20 40 40 H 1.09889 * 109.12402 * 75.19674 * 22 21 20 41 41 H 1.09812 * 109.02830 * 46.43076 * 25 16 14 42 42 H 1.09824 * 109.00887 * 289.75607 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 16 2.4297 -3.8779 -0.0014 11 8 3.1255 -3.9389 1.2361 12 8 3.1274 -3.9378 -1.2380 13 7 1.4793 -5.2341 -0.0035 14 6 0.6897 -5.5020 -1.0623 15 8 0.6755 -4.7502 -2.0138 16 6 -0.1835 -6.7472 -1.0639 17 6 0.7186 -7.9510 -0.8458 18 6 0.0152 -9.2808 -1.1021 19 1 0.7466 -10.1054 -1.0691 20 6 -1.0914 -9.5247 -0.0807 21 6 -2.2599 -8.5667 -0.2112 22 6 -2.7622 -8.3585 -1.6272 23 6 -1.6448 -8.1119 -2.6368 24 1 -2.0527 -8.1295 -3.6610 25 6 -0.9504 -6.7788 -2.3756 26 6 -0.6178 -9.2189 -2.4805 27 8 -0.3311 -9.9797 -3.3701 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5563 -0.8919 30 1 0.6240 -2.5575 0.8880 31 1 1.4909 -5.8356 0.7575 32 1 -0.8729 -6.6379 -0.2268 33 1 1.0934 -7.9356 0.1860 34 1 1.5892 -7.8712 -1.5098 35 1 -0.6688 -9.4408 0.9305 36 1 -1.4574 -10.5553 -0.1898 37 1 -2.0456 -7.6174 0.2722 38 1 -3.1023 -8.9975 0.3738 39 1 -3.4529 -7.5042 -1.6425 40 1 -3.3368 -9.2418 -1.9389 41 1 -0.2574 -6.5667 -3.2007 42 1 -1.7021 -5.9782 -2.3698 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821582620.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:48 Heat of formation + Delta-G solvation = -173.679058 kcal Electronic energy + Delta-G solvation = -27149.930898 eV Core-core repulsion = 23221.031511 eV Total energy + Delta-G solvation = -3928.899387 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.39833 -39.63867 -37.50166 -36.28453 -35.22217 -34.38967 -33.39335 -33.29789 -33.16833 -29.24675 -29.07818 -26.66559 -23.74933 -23.41326 -22.32991 -22.13794 -20.58979 -19.26770 -18.40402 -17.53861 -17.10141 -16.85844 -16.42056 -15.77284 -15.47214 -15.32493 -15.02701 -14.84051 -14.60678 -14.25884 -14.08993 -13.92028 -13.87975 -13.47469 -13.15475 -12.62859 -12.56393 -12.32391 -12.22795 -11.99292 -11.56258 -11.50688 -11.45783 -11.41562 -11.35363 -11.33356 -11.24164 -10.91525 -10.83745 -10.69495 -10.54116 -10.30227 -9.93868 -9.72483 -9.37124 -9.20720 -8.73252 -6.36415 -4.47803 0.97982 1.72692 2.31338 3.10166 3.22584 3.24973 3.29716 3.74109 4.04240 4.11396 4.18733 4.22999 4.39459 4.44207 4.54290 4.66003 4.68706 4.77838 4.86579 4.94743 5.03299 5.08835 5.13763 5.21668 5.27429 5.30879 5.33735 5.50186 5.53800 5.55816 5.58493 5.72322 5.81073 5.88711 5.99365 6.10657 6.52848 6.70659 6.93379 7.24893 7.38001 7.67382 7.72028 8.53019 9.19843 10.75292 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.022074 B = 0.003301 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.142399 B = 8480.687349 C = 8880.520587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.078 3.922 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.537 4.537 8 H 0.070 0.930 9 C -0.403 4.403 10 S 2.551 3.449 11 O -0.969 6.969 12 O -0.952 6.952 13 N -1.060 6.060 14 C 0.528 3.472 15 O -0.483 6.483 16 C -0.104 4.104 17 C -0.107 4.107 18 C -0.129 4.129 19 H 0.101 0.899 20 C -0.105 4.105 21 C -0.127 4.127 22 C -0.106 4.106 23 C -0.129 4.129 24 H 0.101 0.899 25 C -0.099 4.099 26 C 0.373 3.627 27 O -0.450 6.450 28 H 0.270 0.730 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.424 0.576 32 H 0.116 0.884 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.708 -18.740 1.899 20.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.128 4.128 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.576 4.576 8 H 0.088 0.912 9 C -0.540 4.540 10 S 2.653 3.347 11 O -0.960 6.960 12 O -0.943 6.943 13 N -0.820 5.820 14 C 0.313 3.687 15 O -0.353 6.353 16 C -0.126 4.126 17 C -0.145 4.145 18 C -0.148 4.148 19 H 0.120 0.880 20 C -0.143 4.143 21 C -0.164 4.164 22 C -0.144 4.144 23 C -0.148 4.148 24 H 0.120 0.880 25 C -0.137 4.137 26 C 0.247 3.753 27 O -0.322 6.322 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.103 0.897 31 H 0.258 0.742 32 H 0.133 0.867 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.102 0.898 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.773 -18.551 0.699 19.761 hybrid contribution -0.235 0.776 0.596 1.007 sum -7.008 -17.774 1.296 19.150 Atomic orbital electron populations 1.69942 1.06262 1.27900 1.47176 1.24911 0.95046 0.99576 0.93309 0.86399 0.79638 0.81242 0.79505 1.19333 1.20632 1.19384 1.20247 0.92729 0.88498 1.56158 0.91195 1.27590 1.09842 1.09187 1.07352 1.07205 0.77348 0.76038 0.74089 1.93522 1.71223 1.85971 1.45249 1.93535 1.70778 1.85212 1.44727 1.55515 1.56204 1.43749 1.26492 1.21014 0.78841 0.87739 0.81078 1.90915 1.63153 1.48687 1.32528 1.21423 0.97384 0.92176 1.01653 1.21359 0.98014 0.91073 1.04009 1.21947 0.98670 0.99131 0.95027 0.88043 1.21281 0.94434 0.99810 0.98733 1.21278 0.97973 1.00628 0.96530 1.21296 0.96571 1.03039 0.93448 1.21982 0.96121 0.94962 1.01759 0.88048 1.21220 1.00361 0.95661 0.96500 1.24942 0.80186 0.81805 0.88323 1.90336 1.57530 1.39606 1.44680 0.92070 0.88371 0.89714 0.74224 0.86662 0.89670 0.90542 0.90420 0.91661 0.90658 0.91919 0.90331 0.91770 0.89822 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.67 13.29 55.43 0.74 -23.94 16 2 C 0.08 2.16 5.46 -17.82 -0.10 2.06 16 3 Si 0.91 20.92 29.54 -169.99 -5.02 15.90 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.54 -14.88 9.13 -34.44 -0.31 -15.19 16 8 H 0.07 1.89 7.71 -52.49 -0.40 1.49 16 9 C -0.40 -9.78 5.64 36.01 0.20 -9.58 16 10 S 2.55 53.67 5.03 -107.50 -0.54 53.13 16 11 O -0.97 -21.56 18.08 -57.54 -1.04 -22.60 16 12 O -0.95 -23.33 17.04 -64.80 -1.10 -24.43 16 13 N -1.06 -15.66 5.46 31.58 0.17 -15.48 16 14 C 0.53 7.88 6.79 -10.30 -0.07 7.81 16 15 O -0.48 -9.39 13.70 -11.60 -0.16 -9.55 16 16 C -0.10 -1.02 1.96 -92.12 -0.18 -1.20 16 17 C -0.11 -0.89 4.33 -27.44 -0.12 -1.01 16 18 C -0.13 -0.98 3.23 -91.65 -0.30 -1.28 16 19 H 0.10 0.74 8.25 -51.20 -0.42 0.31 16 20 C -0.11 -0.58 5.27 -27.63 -0.15 -0.73 16 21 C -0.13 -0.70 4.82 -28.07 -0.14 -0.83 16 22 C -0.11 -0.68 5.28 -27.60 -0.15 -0.82 16 23 C -0.13 -1.11 3.23 -91.66 -0.30 -1.41 16 24 H 0.10 0.86 8.25 -51.21 -0.42 0.44 16 25 C -0.10 -1.01 4.05 -27.48 -0.11 -1.13 16 26 C 0.37 3.81 5.86 -27.94 -0.16 3.64 16 27 O -0.45 -6.16 17.96 6.20 0.11 -6.05 16 28 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.10 2.49 7.19 -51.92 -0.37 2.11 16 30 H 0.08 1.96 8.14 -51.92 -0.42 1.54 16 31 H 0.42 4.30 8.08 -34.47 -0.28 4.02 16 32 H 0.12 0.84 5.44 -51.93 -0.28 0.55 16 33 H 0.08 0.50 7.61 -51.48 -0.39 0.11 16 34 H 0.08 0.75 8.08 -51.49 -0.42 0.33 16 35 H 0.08 0.33 8.22 -51.41 -0.42 -0.09 16 36 H 0.06 0.35 8.22 -51.41 -0.42 -0.07 16 37 H 0.08 0.39 5.68 -52.12 -0.30 0.09 16 38 H 0.06 0.28 8.31 -50.63 -0.42 -0.14 16 39 H 0.08 0.45 8.21 -51.43 -0.42 0.03 16 40 H 0.06 0.38 8.22 -51.42 -0.42 -0.04 16 41 H 0.08 1.03 7.55 -51.47 -0.39 0.64 16 42 H 0.09 0.87 8.21 -51.46 -0.42 0.45 16 LS Contribution 346.10 15.07 5.22 5.22 Total: -1.00 -36.89 346.10 -9.27 -46.16 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -5.77 Total: 1.29 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -1.87 Total: -19.65 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.91 Total: -39.42 kcal Atomic # 8 Polarization: -60.43 SS G_CDS: -2.19 Total: -62.62 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 53.67 SS G_CDS: -0.54 Total: 53.13 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.89 -9.27 -46.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821582620.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.520 kcal (2) G-P(sol) polarization free energy of solvation -36.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds