Wall clock time and date at job start Tue Mar 31 2020 06:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34263 * 125.75239 * 2 1 4 4 C 1.38042 * 107.41458 * 180.14532 * 3 2 1 5 5 C 1.47433 * 126.41139 * 179.87337 * 4 3 2 6 6 O 1.21604 * 119.99590 * 175.76850 * 5 4 3 7 7 N 1.34770 * 120.00060 * 355.49017 * 5 4 3 8 8 S 1.65601 * 120.00023 * 180.02562 * 7 5 4 9 9 O 1.42099 * 104.27815 * 181.06984 * 8 7 5 10 10 O 1.42109 * 104.27531 * 308.92516 * 8 7 5 11 11 C 1.81400 * 104.45406 * 64.99537 * 8 7 5 12 12 C 1.50698 * 109.47409 * 180.02562 * 11 8 7 13 13 H 1.08003 * 119.99814 * 0.02562 * 12 11 8 14 14 C 1.37881 * 120.00041 * 180.02562 * 12 11 8 15 15 N 1.31511 * 119.99927 * 179.97438 * 14 12 11 16 16 Si 1.86793 * 119.99885 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47412 * 89.99858 * 16 14 12 18 18 H 1.48498 * 109.47223 * 210.00129 * 16 14 12 19 19 H 1.48507 * 109.47490 * 330.00036 * 16 14 12 20 20 C 1.41286 * 107.17349 * 359.61296 * 4 3 2 21 21 C 1.50701 * 125.99344 * 180.20601 * 20 4 3 22 22 C 1.53005 * 109.47025 * 61.28170 * 21 20 4 23 23 C 1.52992 * 109.47516 * 181.28659 * 21 20 4 24 24 C 1.53002 * 109.46602 * 301.28804 * 21 20 4 25 25 N 1.30447 * 108.02095 * 0.23555 * 20 4 3 26 26 H 1.08998 * 109.46954 * 270.26094 * 1 2 3 27 27 H 1.08998 * 109.47178 * 30.26563 * 1 2 3 28 28 H 1.08997 * 109.46701 * 150.26627 * 1 2 3 29 29 H 1.08002 * 126.28985 * 0.02562 * 3 2 1 30 30 H 0.96998 * 120.00453 * 359.97438 * 7 5 4 31 31 H 1.09000 * 109.46994 * 300.00500 * 11 8 7 32 32 H 1.09006 * 109.47001 * 60.00112 * 11 8 7 33 33 H 0.96998 * 119.99796 * 180.02562 * 15 14 12 34 34 H 1.09002 * 109.46380 * 68.38230 * 22 21 20 35 35 H 1.08999 * 109.47046 * 188.38255 * 22 21 20 36 36 H 1.09001 * 109.47264 * 308.38370 * 22 21 20 37 37 H 1.08994 * 109.47261 * 59.99453 * 23 21 20 38 38 H 1.09003 * 109.47304 * 179.97438 * 23 21 20 39 39 H 1.09001 * 109.47065 * 299.99669 * 23 21 20 40 40 H 1.08995 * 109.47663 * 51.72352 * 24 21 20 41 41 H 1.09000 * 109.46684 * 171.72004 * 24 21 20 42 42 H 1.08995 * 109.47014 * 291.72037 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0896 0.0000 4 6 3.5598 0.6553 -0.0033 5 6 4.7638 1.5062 -0.0072 6 8 5.8667 0.9995 0.0678 7 7 4.6423 2.8453 -0.0994 8 16 5.9947 3.8010 -0.1044 9 8 5.4873 5.1258 -0.1863 10 8 6.7337 3.3683 1.0297 11 6 6.8590 3.3546 -1.6355 12 6 8.1224 4.1674 -1.7545 13 1 8.3799 4.8809 -0.9857 14 6 8.9496 4.0002 -2.8449 15 7 10.0518 4.7099 -2.9490 16 14 8.5038 2.7667 -4.1749 17 1 7.6810 3.4355 -5.2146 18 1 9.7449 2.2345 -4.7925 19 1 7.7309 1.6494 -3.5750 20 6 3.5311 -0.7572 0.0037 21 6 4.7322 -1.6675 0.0076 22 6 5.5581 -1.4167 1.2710 23 6 4.2677 -3.1250 -0.0172 24 6 5.5904 -1.3845 -1.2271 25 7 2.2827 -1.1355 0.0057 26 1 -0.3633 0.0047 1.0276 27 1 -0.3633 0.8876 -0.5179 28 1 -0.3632 -0.8924 -0.5097 29 1 1.9165 2.1170 0.0004 30 1 3.7628 3.2492 -0.1637 31 1 7.1102 2.2941 -1.6150 32 1 6.2135 3.5586 -2.4898 33 1 10.6336 4.5925 -3.7163 34 1 5.0005 -1.7582 2.1431 35 1 6.4989 -1.9631 1.2044 36 1 5.7630 -0.3503 1.3654 37 1 3.6794 -3.3035 -0.9172 38 1 5.1365 -3.7833 -0.0149 39 1 3.6564 -3.3265 0.8624 40 1 5.7989 -0.3164 -1.2877 41 1 6.5286 -1.9341 -1.1511 42 1 5.0550 -1.7015 -2.1220 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821583769.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:49 Heat of formation + Delta-G solvation = -34.610510 kcal Electronic energy + Delta-G solvation = -27336.258426 eV Core-core repulsion = 23445.682254 eV Total energy + Delta-G solvation = -3890.576172 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 16.09 seconds Orbital eigenvalues (eV) -41.83646 -39.41440 -36.90654 -36.33812 -35.25749 -34.21262 -33.23158 -32.93034 -30.63509 -29.78693 -27.39889 -27.01290 -26.96582 -23.78115 -23.01454 -21.93151 -20.94669 -19.44424 -18.50717 -18.03690 -17.52515 -16.50210 -16.33334 -16.08818 -15.72471 -15.00426 -14.86493 -14.77239 -14.66392 -14.19281 -14.12608 -14.05388 -13.23865 -12.99542 -12.83285 -12.70101 -12.50331 -12.11723 -12.05154 -11.95835 -11.64755 -11.53837 -11.46153 -11.35060 -11.28268 -11.08566 -10.88744 -10.83794 -10.50309 -10.36281 -10.24976 -9.89497 -9.74170 -9.59340 -9.38177 -8.90954 -8.80792 -6.29634 -4.38799 0.88353 1.17419 1.94834 2.04419 3.08835 3.17097 3.20432 3.27047 3.29051 3.98144 4.25146 4.26051 4.41585 4.51232 4.69538 4.69875 4.85620 4.91888 4.96096 5.07332 5.10416 5.14345 5.22431 5.33228 5.46950 5.74830 5.81931 6.00004 6.02606 6.03632 6.16453 6.18554 6.20287 6.35044 6.40270 6.49390 6.63146 6.68619 6.91397 7.20099 7.37369 7.83371 8.01575 8.60723 9.25295 10.81278 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.013843 B = 0.004517 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.248074 B = 6197.921031 C = 7045.154123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.362 5.362 3 C 0.106 3.894 4 C -0.290 4.290 5 C 0.608 3.392 6 O -0.478 6.478 7 N -1.060 6.060 8 S 2.579 3.421 9 O -0.962 6.962 10 O -0.941 6.941 11 C -0.458 4.458 12 C -0.532 4.532 13 H 0.087 0.913 14 C 0.091 3.909 15 N -0.879 5.879 16 Si 0.880 3.120 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.259 1.259 20 C 0.153 3.847 21 C 0.015 3.985 22 C -0.151 4.151 23 C -0.135 4.135 24 C -0.150 4.150 25 N -0.296 5.296 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.186 0.814 30 H 0.421 0.579 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.272 0.728 34 H 0.044 0.956 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.797 -12.034 3.661 24.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.139 5.139 3 C -0.046 4.046 4 C -0.307 4.307 5 C 0.397 3.603 6 O -0.351 6.351 7 N -0.819 5.819 8 S 2.680 3.320 9 O -0.953 6.953 10 O -0.931 6.931 11 C -0.594 4.594 12 C -0.571 4.571 13 H 0.105 0.895 14 C -0.116 4.116 15 N -0.515 5.515 16 Si 0.705 3.295 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.183 1.183 20 C -0.015 4.015 21 C 0.013 3.987 22 C -0.208 4.208 23 C -0.192 4.192 24 C -0.208 4.208 25 N -0.116 5.116 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.203 0.797 30 H 0.254 0.746 31 H 0.118 0.882 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -20.645 -12.765 4.336 24.657 hybrid contribution -0.405 0.155 -1.337 1.406 sum -21.051 -12.610 2.999 24.721 Atomic orbital electron populations 1.22002 0.73431 1.05050 1.03916 1.48359 1.07154 1.03905 1.54522 1.23113 0.90381 0.93991 0.97127 1.20151 0.92352 0.94043 1.24105 1.17089 0.88755 0.80634 0.73859 1.90854 1.26681 1.72000 1.45602 1.55438 1.28039 1.17558 1.80897 1.06279 0.73284 0.73219 0.79250 1.93538 1.78536 1.34600 1.88637 1.93555 1.70086 1.81362 1.48118 1.28105 1.09232 1.08509 1.13553 1.20026 1.03136 1.23513 1.10467 0.89548 1.24840 0.94025 0.95186 0.97501 1.69859 1.12033 1.39409 1.30191 0.86759 0.78800 0.82130 0.81790 1.19714 1.20525 1.18298 1.22508 0.93028 0.91993 0.93965 1.19072 0.89216 0.92146 0.98288 1.22130 0.98709 1.05726 0.94276 1.21812 1.00909 0.94423 1.02065 1.22107 0.98731 1.05237 0.94732 1.77233 1.01166 1.06706 1.26480 0.90181 0.88957 0.88816 0.79682 0.74551 0.88228 0.90220 0.91826 0.93649 0.91829 0.88821 0.92607 0.92178 0.92552 0.89458 0.91678 0.93486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.41 11.44 59.85 0.68 1.10 16 2 N -0.36 -3.35 3.98 -67.60 -0.27 -3.62 16 3 C 0.11 0.98 10.99 -16.56 -0.18 0.80 16 4 C -0.29 -3.81 5.90 -105.07 -0.62 -4.43 16 5 C 0.61 9.59 6.95 -12.52 -0.09 9.50 16 6 O -0.48 -8.94 8.47 -11.78 -0.10 -9.04 16 7 N -1.06 -15.70 5.59 30.43 0.17 -15.53 16 8 S 2.58 53.17 5.03 -107.50 -0.54 52.63 16 9 O -0.96 -21.13 18.08 -57.54 -1.04 -22.17 16 10 O -0.94 -22.54 17.04 -64.77 -1.10 -23.64 16 11 C -0.46 -10.50 4.71 36.00 0.17 -10.33 16 12 C -0.53 -15.00 9.68 -34.44 -0.33 -15.34 16 13 H 0.09 2.61 7.96 -52.48 -0.42 2.19 16 14 C 0.09 2.59 5.47 -17.82 -0.10 2.50 16 15 N -0.88 -26.24 13.96 55.43 0.77 -25.47 16 16 Si 0.88 20.73 27.47 -169.99 -4.67 16.06 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 19 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 20 C 0.15 2.08 5.64 -82.02 -0.46 1.62 16 21 C 0.01 0.20 0.75 -155.66 -0.12 0.08 16 22 C -0.15 -2.09 8.20 37.16 0.30 -1.78 16 23 C -0.13 -1.51 7.94 37.15 0.30 -1.21 16 24 C -0.15 -2.12 8.19 37.16 0.30 -1.82 16 25 N -0.30 -3.68 11.79 33.89 0.40 -3.28 16 26 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.19 0.86 7.48 -52.49 -0.39 0.47 16 30 H 0.42 4.24 7.73 -34.47 -0.27 3.98 16 31 H 0.10 2.25 6.24 -51.92 -0.32 1.93 16 32 H 0.08 1.62 7.57 -51.92 -0.39 1.23 16 33 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.04 0.57 8.13 -51.93 -0.42 0.15 16 35 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 36 H 0.09 1.53 4.71 -51.93 -0.24 1.29 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.43 4.64 -51.93 -0.24 1.19 16 41 H 0.06 0.86 8.08 -51.93 -0.42 0.44 16 42 H 0.05 0.61 8.13 -51.93 -0.42 0.19 16 LS Contribution 353.92 15.07 5.33 5.33 Total: -1.00 -37.83 353.92 -6.85 -44.68 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -5.66 Total: 3.37 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -0.14 Total: -19.31 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 1.07 Total: -47.90 kcal Atomic # 8 Polarization: -52.61 SS G_CDS: -2.24 Total: -54.85 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.67 Total: 16.06 kcal Atomic # 16 Polarization: 53.17 SS G_CDS: -0.54 Total: 52.63 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -37.83 -6.85 -44.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821583769.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.067 kcal (2) G-P(sol) polarization free energy of solvation -37.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 16.09 seconds