Wall clock time and date at job start Tue Mar 31 2020 06:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38036 * 126.29302 * 2 1 4 4 C 1.47436 * 126.41450 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00091 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99867 * 179.72839 * 4 3 2 7 7 S 1.65598 * 119.99992 * 179.97438 * 6 4 3 8 8 O 1.42105 * 104.28014 * 181.06888 * 7 6 4 9 9 O 1.42094 * 104.27940 * 308.92640 * 7 6 4 10 10 C 1.81404 * 104.45099 * 64.99802 * 7 6 4 11 11 C 1.50693 * 109.47113 * 180.02562 * 10 7 6 12 12 H 1.07997 * 120.00321 * 0.02562 * 11 10 7 13 13 C 1.37883 * 119.99728 * 179.97438 * 11 10 7 14 14 N 1.31505 * 120.00177 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99908 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.46906 * 60.00265 * 15 13 11 17 17 H 1.48495 * 109.46961 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47299 * 300.00213 * 15 13 11 19 19 C 1.41286 * 107.17192 * 180.24871 * 3 2 1 20 20 N 1.30448 * 108.02337 * 359.61207 * 19 3 2 21 21 N 1.34259 * 126.28729 * 180.02562 * 2 1 3 22 22 C 1.46503 * 125.75762 * 359.97438 * 21 2 1 23 23 C 1.52995 * 109.46922 * 90.00177 * 22 21 2 24 24 C 1.52998 * 109.46941 * 174.99996 * 23 22 21 25 25 C 1.53002 * 109.47120 * 295.00054 * 23 22 21 26 26 H 1.09000 * 109.47568 * 89.97502 * 1 2 3 27 27 H 1.09002 * 109.47528 * 209.97528 * 1 2 3 28 28 H 1.08998 * 109.46953 * 329.97793 * 1 2 3 29 29 H 0.97004 * 120.00018 * 359.97438 * 6 4 3 30 30 H 1.09001 * 109.46803 * 300.00487 * 10 7 6 31 31 H 1.09002 * 109.46971 * 59.99952 * 10 7 6 32 32 H 0.97001 * 120.00411 * 179.97438 * 14 13 11 33 33 H 1.08000 * 125.99145 * 179.77305 * 19 3 2 34 34 H 1.09004 * 109.46911 * 210.00324 * 22 21 2 35 35 H 1.09002 * 109.46643 * 329.99944 * 22 21 2 36 36 H 1.08997 * 109.47464 * 55.00245 * 23 22 21 37 37 H 1.09005 * 109.46969 * 60.00120 * 24 23 22 38 38 H 1.09004 * 109.47012 * 179.97438 * 24 23 22 39 39 H 1.09000 * 109.47577 * 300.00065 * 24 23 22 40 40 H 1.09004 * 109.46877 * 299.99777 * 25 23 22 41 41 H 1.09001 * 109.46949 * 60.00098 * 25 23 22 42 42 H 1.08998 * 109.46749 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.7999 3.5106 0.0051 7 16 2.3077 5.0917 0.0038 8 8 3.5183 5.8357 -0.0149 9 8 1.3830 5.1701 -1.0722 10 6 1.4560 5.3020 1.5916 11 6 0.9554 6.7184 1.7094 12 1 1.1316 7.4218 0.9091 13 6 0.2715 7.1162 2.8387 14 7 0.0556 6.2594 3.8127 15 14 -0.3484 8.8723 2.9851 16 1 -1.2922 9.1582 1.8748 17 1 -1.0468 9.0439 4.2843 18 1 0.8004 9.8105 2.9123 19 6 3.6589 0.6498 -0.0059 20 7 3.6340 -0.6545 -0.0007 21 7 2.3016 -1.0822 -0.0005 22 6 1.8500 -2.4759 -0.0006 23 6 1.6923 -2.9607 -1.4431 24 6 1.3418 -4.4500 -1.4450 25 6 0.5732 -2.1725 -2.1266 26 1 -0.3634 0.0004 -1.0276 27 1 -0.3634 -0.8902 0.5134 28 1 -0.3633 0.8898 0.5142 29 1 3.7462 3.2972 0.0098 30 1 0.6128 4.6133 1.6456 31 1 2.1491 5.0922 2.4063 32 1 -0.4252 6.5393 4.6073 33 1 4.5448 1.2675 -0.0108 34 1 2.5848 -3.0960 0.5130 35 1 0.8915 -2.5472 0.5136 36 1 2.6269 -2.8067 -1.9824 37 1 0.4072 -4.6041 -0.9057 38 1 1.2290 -4.7954 -2.4728 39 1 2.1391 -5.0116 -0.9581 40 1 -0.3615 -2.3266 -1.5873 41 1 0.8229 -1.1115 -2.1252 42 1 0.4606 -2.5183 -3.1541 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821584328.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:16 Heat of formation + Delta-G solvation = -53.731754 kcal Electronic energy + Delta-G solvation = -26365.135853 eV Core-core repulsion = 22473.730522 eV Total energy + Delta-G solvation = -3891.405331 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.73436 -39.18014 -36.91585 -36.15163 -35.09366 -34.08939 -33.30850 -32.67438 -31.82900 -29.00251 -27.99722 -27.34248 -26.64456 -23.56785 -23.10170 -21.73844 -20.44536 -19.86553 -18.86083 -17.91332 -17.21011 -16.46408 -16.21735 -16.07910 -15.53880 -15.27901 -14.76587 -14.67138 -14.44808 -14.24929 -14.13032 -13.66049 -13.48878 -13.14313 -13.07784 -12.76695 -12.48602 -12.45672 -12.28486 -12.08339 -11.81794 -11.63152 -11.42820 -11.41471 -11.22407 -11.21947 -11.12299 -10.97598 -10.85367 -10.61677 -10.37150 -9.92940 -9.74473 -9.55836 -9.10169 -8.74423 -8.66140 -6.28854 -4.39652 1.11507 1.36248 2.01245 2.12295 3.26916 3.27442 3.30011 3.33944 3.39398 4.06634 4.23594 4.26717 4.35642 4.44477 4.52906 4.65665 4.80681 4.85034 4.90390 5.04018 5.07102 5.13018 5.18666 5.20596 5.29736 5.36484 5.39009 5.44840 5.46885 5.60751 5.70723 5.78080 5.85899 6.03148 6.25049 6.66636 6.67885 6.84360 7.13224 7.40836 7.46248 7.78517 7.97721 8.61424 9.27182 10.82912 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.022139 B = 0.002960 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.460292 B = 9456.116154 C = 9945.669270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.169 3.831 3 C -0.301 4.301 4 C 0.615 3.385 5 O -0.498 6.498 6 N -1.057 6.057 7 S 2.558 3.442 8 O -0.971 6.971 9 O -0.953 6.953 10 C -0.404 4.404 11 C -0.534 4.534 12 H 0.070 0.930 13 C 0.078 3.922 14 N -0.878 5.878 15 Si 0.906 3.094 16 H -0.269 1.269 17 H -0.282 1.282 18 H -0.269 1.269 19 C 0.088 3.912 20 N -0.297 5.297 21 N -0.357 5.357 22 C 0.131 3.869 23 C -0.113 4.113 24 C -0.145 4.145 25 C -0.159 4.159 26 H 0.092 0.908 27 H 0.071 0.929 28 H 0.111 0.889 29 H 0.422 0.578 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.269 0.731 33 H 0.192 0.808 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.294 -21.706 -6.588 22.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.036 3.964 3 C -0.318 4.318 4 C 0.403 3.597 5 O -0.372 6.372 6 N -0.815 5.815 7 S 2.660 3.340 8 O -0.961 6.961 9 O -0.943 6.943 10 C -0.541 4.541 11 C -0.574 4.574 12 H 0.088 0.912 13 C -0.129 4.129 14 N -0.514 5.514 15 Si 0.731 3.269 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.194 1.194 19 C -0.100 4.100 20 N -0.116 5.116 21 N -0.137 5.137 22 C 0.010 3.990 23 C -0.132 4.132 24 C -0.202 4.202 25 C -0.216 4.216 26 H 0.110 0.890 27 H 0.090 0.910 28 H 0.129 0.871 29 H 0.255 0.745 30 H 0.117 0.883 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.209 0.791 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.198 -22.204 -7.162 23.549 hybrid contribution -0.216 1.127 0.734 1.363 sum 2.982 -21.077 -6.428 22.236 Atomic orbital electron populations 1.20917 0.85937 1.05192 1.04547 1.21536 0.95015 0.86156 0.93667 1.19953 0.93212 0.93137 1.25458 1.17006 0.84922 0.84298 0.73432 1.90931 1.15422 1.83965 1.46857 1.55280 1.17472 1.27517 1.81240 1.06988 0.75184 0.71260 0.80557 1.93517 1.46180 1.67510 1.88925 1.93522 1.64454 1.83414 1.52903 1.27599 1.08695 1.06692 1.11101 1.20255 1.39391 0.92382 1.05325 0.91213 1.24910 0.94604 0.98512 0.94868 1.69946 1.39272 1.35033 1.07108 0.86419 0.79450 0.83200 0.77804 1.19378 1.20730 1.19424 1.24047 0.97181 0.92035 0.96743 1.77168 0.96146 1.13039 1.25233 1.48494 1.03931 1.06002 1.55228 1.21963 1.01357 0.77284 0.98407 1.21541 1.00638 0.96169 0.94869 1.21777 1.01830 0.93972 1.02668 1.22088 0.97947 1.00642 1.00942 0.88964 0.90998 0.87061 0.74473 0.88254 0.89729 0.92160 0.79134 0.88259 0.88474 0.90100 0.92154 0.91816 0.92218 0.91989 0.92044 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 8.37 36.01 0.30 -0.83 16 2 C 0.17 2.09 5.76 -81.61 -0.47 1.62 16 3 C -0.30 -4.28 6.13 -105.07 -0.64 -4.92 16 4 C 0.62 10.72 7.55 -12.52 -0.09 10.63 16 5 O -0.50 -10.26 12.93 -11.77 -0.15 -10.41 16 6 N -1.06 -17.70 5.60 30.43 0.17 -17.53 16 7 S 2.56 56.18 5.03 -107.50 -0.54 55.64 16 8 O -0.97 -22.41 18.08 -57.54 -1.04 -23.45 16 9 O -0.95 -23.88 17.04 -64.76 -1.10 -24.99 16 10 C -0.40 -10.14 5.64 36.00 0.20 -9.93 16 11 C -0.53 -15.05 9.13 -34.44 -0.31 -15.37 16 12 H 0.07 1.91 7.71 -52.49 -0.40 1.51 16 13 C 0.08 2.17 5.46 -17.82 -0.10 2.08 16 14 N -0.88 -25.21 13.28 55.43 0.74 -24.48 16 15 Si 0.91 21.23 29.54 -169.99 -5.02 16.21 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 C 0.09 1.05 11.50 -16.98 -0.20 0.86 16 20 N -0.30 -3.66 12.50 30.86 0.39 -3.27 16 21 N -0.36 -3.86 3.41 -56.61 -0.19 -4.06 16 22 C 0.13 0.93 5.66 -4.04 -0.02 0.90 16 23 C -0.11 -0.72 3.13 -90.62 -0.28 -1.00 16 24 C -0.14 -0.64 9.19 37.16 0.34 -0.30 16 25 C -0.16 -1.09 7.73 37.16 0.29 -0.80 16 26 H 0.09 0.88 6.68 -51.93 -0.35 0.54 16 27 H 0.07 0.53 7.05 -51.93 -0.37 0.17 16 28 H 0.11 1.45 6.50 -51.93 -0.34 1.11 16 29 H 0.42 5.24 7.74 -34.47 -0.27 4.97 16 30 H 0.10 2.59 7.18 -51.92 -0.37 2.22 16 31 H 0.08 2.05 8.14 -51.92 -0.42 1.63 16 32 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.19 1.61 7.50 -52.49 -0.39 1.22 16 34 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.10 0.52 7.02 -51.93 -0.36 0.15 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 40 H 0.06 0.35 8.04 -51.93 -0.42 -0.07 16 41 H 0.06 0.55 5.38 -51.93 -0.28 0.27 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 360.09 15.07 5.43 5.43 Total: -1.00 -37.14 360.09 -7.96 -45.10 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.64 Total: 2.87 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -0.99 Total: -17.07 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 1.10 Total: -49.33 kcal Atomic # 8 Polarization: -56.56 SS G_CDS: -2.30 Total: -58.85 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 56.18 SS G_CDS: -0.54 Total: 55.64 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -37.14 -7.96 -45.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821584328.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.633 kcal (2) G-P(sol) polarization free energy of solvation -37.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds