Wall clock time and date at job start Tue Mar 31 2020 07:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47145 * 260.56962 * 3 2 1 5 5 S 1.65596 * 119.99862 * 165.00308 * 4 3 2 6 6 O 1.42098 * 106.40356 * 311.46341 * 5 4 3 7 7 O 1.42097 * 106.40513 * 178.54251 * 5 4 3 8 8 N 1.65607 * 107.21887 * 65.00181 * 5 4 3 9 9 C 1.46961 * 120.59168 * 89.99818 * 8 5 4 10 10 C 1.53367 * 108.63256 * 235.20537 * 9 8 5 11 11 N 1.46964 * 108.63705 * 310.57769 * 10 9 8 12 12 C 1.34780 * 120.59257 * 235.20813 * 11 10 9 13 13 O 1.21280 * 120.00423 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99795 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46756 * 59.99920 * 20 18 16 22 22 H 1.48490 * 109.47381 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47117 * 300.00527 * 20 18 16 24 24 C 1.46960 * 118.81335 * 55.47942 * 11 10 9 25 25 C 1.46964 * 120.59480 * 269.97897 * 8 5 4 26 26 H 4.40645 * 5.51443 * 179.97438 * 4 1 2 27 27 H 1.09001 * 109.46533 * 140.57273 * 3 2 1 28 28 H 1.09000 * 109.47600 * 20.57683 * 3 2 1 29 29 H 0.96994 * 119.99630 * 345.00404 * 4 3 2 30 30 H 1.08998 * 109.60885 * 115.46122 * 9 8 5 31 31 H 1.08998 * 109.61477 * 354.95056 * 9 8 5 32 32 H 1.09008 * 109.60931 * 190.83257 * 10 9 8 33 33 H 1.09004 * 109.61342 * 70.32577 * 10 9 8 34 34 H 1.09002 * 109.47060 * 299.99722 * 14 12 11 35 35 H 1.09001 * 109.47380 * 59.99809 * 14 12 11 36 36 H 1.09002 * 109.47153 * 299.99998 * 15 14 12 37 37 H 1.08998 * 109.47533 * 59.99628 * 15 14 12 38 38 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 39 39 H 1.09000 * 109.60819 * 64.26754 * 24 11 10 40 40 H 1.09001 * 109.61299 * 184.77780 * 24 11 10 41 41 H 1.08998 * 109.60942 * 244.53831 * 25 8 5 42 42 H 1.09008 * 109.60964 * 5.04754 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.2272 1.3625 5 16 4.7164 -0.0860 1.7379 6 8 5.0016 -1.3806 1.2262 7 8 4.8811 0.2628 3.1055 8 7 5.6455 0.9750 0.8697 9 6 6.0040 2.2860 1.4287 10 6 5.5581 3.3761 0.4465 11 7 6.0391 3.0234 -0.8967 12 6 6.7952 3.8869 -1.6032 13 8 7.0841 4.9663 -1.1318 14 6 7.2808 3.5115 -2.9796 15 6 8.1107 4.6593 -3.5583 16 6 8.5968 4.2838 -4.9343 17 1 8.3392 3.3227 -5.3544 18 6 9.3695 5.1674 -5.6576 19 7 9.6827 6.3379 -5.1462 20 14 9.9727 4.7016 -7.3631 21 1 8.8075 4.4386 -8.2454 22 1 10.7769 5.8161 -7.9252 23 1 10.8123 3.4800 -7.2746 24 6 5.6759 1.7147 -1.4580 25 6 6.1265 0.6223 -0.4735 26 1 -1.0501 0.0002 -0.0001 27 1 3.0089 0.7947 -0.6527 28 1 3.0099 -0.9612 -0.3612 29 1 2.5307 0.5606 2.0448 30 1 7.0834 2.3405 1.5704 31 1 5.4996 2.4264 2.3847 32 1 5.9817 4.3346 0.7467 33 1 4.4700 3.4402 0.4402 34 1 7.8962 2.6141 -2.9156 35 1 6.4251 3.3200 -3.6271 36 1 7.4950 5.5565 -3.6223 37 1 8.9663 4.8514 -2.9110 38 1 10.2260 6.9598 -5.6552 39 1 4.5960 1.6631 -1.5967 40 1 6.1773 1.5755 -2.4158 41 1 7.2146 0.5583 -0.4673 42 1 5.7029 -0.3362 -0.7737 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000831574689.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:57 Heat of formation + Delta-G solvation = -49.090310 kcal Electronic energy + Delta-G solvation = -26343.626965 eV Core-core repulsion = 22452.422902 eV Total energy + Delta-G solvation = -3891.204063 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.93829 -37.72252 -37.55861 -36.48081 -36.22269 -33.93415 -33.56229 -32.71133 -31.89515 -30.74985 -27.46275 -26.96749 -25.66179 -24.07953 -22.55272 -21.25364 -19.98754 -19.29662 -18.93252 -18.07052 -17.51387 -16.84302 -16.70130 -15.97417 -15.76360 -15.59612 -15.43057 -15.16448 -14.68956 -14.56274 -14.44749 -14.15039 -13.75781 -13.42186 -12.88370 -12.85888 -12.56301 -12.46357 -12.35384 -12.18646 -12.16993 -11.83780 -11.61377 -11.33259 -11.14715 -11.08669 -11.02546 -10.94137 -10.63668 -10.03943 -10.00764 -9.83268 -9.66408 -9.24857 -9.06604 -8.45766 -8.34154 -5.99118 -4.03938 0.12460 2.02928 2.32322 2.62486 3.08124 3.14794 3.21520 3.32206 3.37464 3.38765 3.71525 3.97688 4.22853 4.44187 4.59932 4.62115 4.82434 4.86351 4.92360 4.98592 5.11154 5.16986 5.30833 5.35896 5.36485 5.44206 5.56393 5.62363 5.71159 5.85399 6.08952 6.12200 6.13375 6.45248 6.56840 6.82645 7.06785 7.61039 7.70183 7.81293 8.03146 8.33915 8.63535 9.04180 9.59875 11.11753 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018205 B = 0.002693 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.677311 B =10396.175961 C =10849.059087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.203 4.203 3 C 0.230 3.770 4 N -1.127 6.127 5 S 2.789 3.211 6 O -0.972 6.972 7 O -0.972 6.972 8 N -1.003 6.003 9 C 0.108 3.892 10 C 0.097 3.903 11 N -0.624 5.624 12 C 0.514 3.486 13 O -0.530 6.530 14 C -0.129 4.129 15 C 0.038 3.962 16 C -0.529 4.529 17 H 0.055 0.945 18 C 0.059 3.941 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.093 3.907 25 C 0.101 3.899 26 H 0.222 0.778 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.419 0.581 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.262 0.738 39 H 0.069 0.931 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.943 -14.638 12.900 25.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.205 4.205 3 C 0.105 3.895 4 N -0.888 5.888 5 S 2.797 3.203 6 O -0.955 6.955 7 O -0.956 6.956 8 N -0.844 5.844 9 C -0.018 4.018 10 C -0.028 4.028 11 N -0.360 5.360 12 C 0.304 3.696 13 O -0.405 6.405 14 C -0.169 4.169 15 C 0.000 4.000 16 C -0.567 4.567 17 H 0.074 0.926 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.032 4.032 25 C -0.025 4.025 26 H 0.238 0.762 27 H 0.108 0.892 28 H 0.120 0.880 29 H 0.253 0.747 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.125 0.875 41 H 0.103 0.897 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.178 -14.609 13.569 25.677 hybrid contribution -0.362 0.203 -0.939 1.026 sum -16.540 -14.406 12.631 25.311 Atomic orbital electron populations 1.25042 0.95981 1.00374 0.97407 1.22725 0.94066 1.01128 1.02573 1.18135 0.85219 1.02896 0.83267 1.56088 1.30197 1.84219 1.18247 1.01872 0.72176 0.73388 0.72887 1.93626 1.83774 1.36991 1.81087 1.93638 1.85192 1.84486 1.32240 1.58003 1.66528 1.30832 1.29061 1.21882 1.02428 0.80986 0.96468 1.21865 0.99050 0.99092 0.82787 1.48176 1.53833 1.17165 1.16857 1.21648 0.76203 0.83517 0.88204 1.90670 1.56017 1.22658 1.71134 1.21898 1.01243 1.03431 0.90313 1.18897 0.94593 0.91654 0.94855 1.21165 1.32547 1.01962 1.01013 0.92645 1.25024 0.96185 0.94990 0.98144 1.69987 1.37572 1.07535 1.37706 0.86648 0.78841 0.77982 0.84430 1.20247 1.21300 1.20224 1.22211 1.00681 0.82590 0.97705 1.22040 1.01662 0.98137 0.80680 0.76159 0.89190 0.87992 0.74668 0.90056 0.88319 0.87776 0.91627 0.90131 0.90201 0.95873 0.95851 0.92858 0.91313 0.87505 0.89658 0.88105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 19.25 29.55 0.57 -0.46 16 2 C -0.20 -1.44 13.49 -37.12 -0.50 -1.94 16 3 C 0.23 1.40 6.72 -6.83 -0.05 1.36 16 4 N -1.13 -7.48 6.04 -13.15 -0.08 -7.56 16 5 S 2.79 25.44 6.15 -107.50 -0.66 24.77 16 6 O -0.97 -11.27 16.30 -57.17 -0.93 -12.20 16 7 O -0.97 -11.61 16.83 -57.17 -0.96 -12.57 16 8 N -1.00 -8.59 3.32 -113.01 -0.38 -8.97 16 9 C 0.11 0.99 6.55 -3.60 -0.02 0.96 16 10 C 0.10 1.04 6.59 -3.60 -0.02 1.02 16 11 N -0.62 -7.95 2.94 -172.21 -0.51 -8.45 16 12 C 0.51 9.22 7.70 -10.98 -0.08 9.13 16 13 O -0.53 -11.82 15.39 5.56 0.09 -11.74 16 14 C -0.13 -2.44 3.98 -27.88 -0.11 -2.55 16 15 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 16 C -0.53 -14.55 9.11 -34.44 -0.31 -14.86 16 17 H 0.06 1.42 7.74 -52.49 -0.41 1.02 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 20 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 C 0.09 0.83 6.53 -3.37 -0.02 0.81 16 25 C 0.10 0.81 6.56 -3.37 -0.02 0.79 16 26 H 0.22 0.61 7.80 -54.09 -0.42 0.19 16 27 H 0.09 0.43 6.79 -51.93 -0.35 0.07 16 28 H 0.10 0.57 7.75 -51.93 -0.40 0.16 16 29 H 0.42 2.34 8.63 -34.47 -0.30 2.04 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.10 0.77 7.09 -51.93 -0.37 0.40 16 32 H 0.10 1.31 6.99 -51.92 -0.36 0.95 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 1.37 7.73 -51.93 -0.40 0.97 16 35 H 0.08 1.36 7.90 -51.93 -0.41 0.95 16 36 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 37 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 38 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.07 0.47 6.79 -51.93 -0.35 0.11 16 40 H 0.11 0.93 5.91 -51.93 -0.31 0.62 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.10 0.63 7.09 -51.92 -0.37 0.26 16 LS Contribution 364.46 15.07 5.49 5.49 Total: -1.00 -38.10 364.46 -8.71 -46.81 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -5.70 Total: -2.22 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -0.79 Total: -3.33 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.22 Total: -51.25 kcal Atomic # 8 Polarization: -34.70 SS G_CDS: -1.81 Total: -36.51 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 25.44 SS G_CDS: -0.66 Total: 24.77 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -38.10 -8.71 -46.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000831574689.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.276 kcal (2) G-P(sol) polarization free energy of solvation -38.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds