Wall clock time and date at job start Tue Mar 31 2020 05:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00069 * 2 1 4 4 H 1.48507 * 109.46846 * 274.99567 * 3 2 1 5 5 H 1.48498 * 109.47233 * 34.99357 * 3 2 1 6 6 H 1.48496 * 109.47071 * 154.99859 * 3 2 1 7 7 C 1.37876 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99976 * 184.92658 * 7 2 1 9 9 C 1.50698 * 119.99987 * 4.93081 * 7 2 1 10 10 O 1.42897 * 110.88577 * 298.63091 * 9 7 2 11 11 C 1.55155 * 111.00703 * 174.74812 * 9 7 2 12 12 C 1.54321 * 102.94556 * 206.38656 * 11 9 7 13 13 N 1.47020 * 107.27305 * 22.19273 * 12 11 9 14 14 C 1.34774 * 125.64806 * 181.02514 * 13 12 11 15 15 O 1.21719 * 119.99755 * 180.02562 * 14 13 12 16 16 C 1.43200 * 120.00079 * 0.02562 * 14 13 12 17 17 C 7.95725 * 75.63942 * 201.10690 * 2 1 3 18 18 C 9.31946 * 77.57137 * 198.83079 * 2 1 3 19 19 C 1.39954 * 120.10621 * 247.94407 * 18 17 16 20 20 C 1.37716 * 119.97466 * 179.97438 * 19 18 17 21 21 C 1.38888 * 120.25284 * 359.97438 * 20 19 18 22 22 C 1.39593 * 120.09509 * 359.97438 * 21 20 19 23 23 C 1.38071 * 120.00569 * 0.02562 * 22 21 20 24 24 O 1.36540 * 108.58693 * 179.97438 * 22 21 20 25 25 C 1.43979 * 105.46002 * 342.69094 * 24 22 21 26 26 O 1.36391 * 131.33145 * 180.02562 * 21 20 19 27 27 C 1.47429 * 108.69865 * 1.28921 * 13 12 11 28 28 H 0.97003 * 119.99983 * 0.02562 * 1 2 3 29 29 H 0.96697 * 113.99949 * 56.12484 * 10 9 7 30 30 H 1.09004 * 110.71374 * 88.01993 * 11 9 7 31 31 H 1.09004 * 110.71967 * 324.75376 * 11 9 7 32 32 H 1.08999 * 109.87834 * 262.77506 * 12 11 9 33 33 H 1.09002 * 110.00936 * 141.68779 * 12 11 9 34 34 H 1.08001 * 120.01394 * 359.95027 * 19 18 17 35 35 H 1.07998 * 119.87475 * 180.25187 * 20 19 18 36 36 H 1.08000 * 120.05685 * 179.97438 * 23 22 21 37 37 H 1.09000 * 110.55969 * 268.63234 * 25 24 22 38 38 H 1.09000 * 110.56384 * 145.78022 * 25 24 22 39 39 H 1.08997 * 110.36794 * 94.48196 * 27 13 12 40 40 H 1.09002 * 110.36385 * 216.80632 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3911 2.1073 -1.3948 5 1 1.5034 2.6199 0.8029 6 1 3.5955 1.4119 0.5917 7 6 2.0045 -1.1941 0.0005 8 1 3.0816 -1.1958 0.0809 9 6 1.2552 -2.4968 -0.1111 10 8 0.3617 -2.6665 0.9911 11 6 2.2353 -3.6944 -0.2220 12 6 1.4059 -4.7506 -0.9824 13 7 0.3485 -4.0340 -1.7103 14 6 -0.5998 -4.6037 -2.4802 15 8 -1.4287 -3.9090 -3.0386 16 6 -0.6320 -6.0262 -2.6412 17 6 -0.6584 -7.1915 -2.7759 18 6 -0.6906 -8.6139 -2.9376 19 6 -0.2547 -9.4482 -1.9019 20 6 -0.2873 -10.8159 -2.0600 21 6 -0.7521 -11.3724 -3.2446 22 6 -1.1895 -10.5466 -4.2816 23 6 -1.1600 -9.1745 -4.1309 24 8 -1.5910 -11.3322 -5.3237 25 6 -1.0139 -12.6272 -5.0726 26 8 -0.8822 -12.6714 -3.6394 27 6 0.5011 -2.5885 -1.4637 28 1 -0.4850 0.8401 -0.0004 29 1 -0.2700 -1.9426 1.1004 30 1 2.5112 -4.0597 0.7672 31 1 3.1214 -3.4160 -0.7925 32 1 0.9604 -5.4509 -0.2759 33 1 2.0415 -5.2881 -1.6861 34 1 0.1075 -9.0196 -0.9791 35 1 0.0456 -11.4582 -1.2582 36 1 -1.4978 -8.5348 -4.9328 37 1 -0.0378 -12.7105 -5.5503 38 1 -1.6800 -13.4170 -5.4200 39 1 1.0867 -2.1277 -2.2591 40 1 -0.4760 -2.1117 -1.3858 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844015629.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:35 Heat of formation + Delta-G solvation = -56.680745 kcal Electronic energy + Delta-G solvation = -26236.056885 eV Core-core repulsion = 22176.786974 eV Total energy + Delta-G solvation = -4059.269911 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.114 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.55769 -39.45817 -38.47770 -37.23877 -36.71772 -34.36696 -33.72031 -32.23719 -31.05830 -30.49550 -29.83836 -27.94172 -26.40587 -25.60421 -24.06533 -23.30685 -22.99085 -21.00660 -19.71923 -18.84304 -18.31060 -17.73882 -17.49854 -17.16369 -16.77171 -15.67198 -15.41761 -15.20151 -14.97951 -14.88968 -14.43398 -14.33964 -14.29419 -13.63720 -13.41382 -13.27430 -13.20125 -13.08183 -12.93868 -12.20464 -12.02910 -11.72277 -11.68113 -11.54059 -11.10672 -10.87638 -10.70350 -10.67293 -10.57694 -10.52770 -10.23662 -9.85281 -9.44050 -9.23719 -8.73958 -8.45138 -8.35116 -7.90570 -6.33615 -4.43061 0.28110 0.80378 1.89564 2.15402 2.49628 2.97028 3.17457 3.20524 3.26706 3.28902 3.37399 3.95651 4.02159 4.15346 4.22887 4.24828 4.46778 4.65666 4.74500 4.80488 4.93314 5.08068 5.11749 5.34751 5.60034 5.61017 5.63119 5.73402 5.79438 5.89369 5.98294 5.98770 6.12643 6.43651 6.65357 6.66204 6.76452 6.83636 7.15167 7.20729 7.28765 7.69424 7.93810 8.01033 8.49626 8.61379 9.25752 9.39098 10.73769 Molecular weight = 329.11amu Principal moments of inertia in cm(-1) A = 0.034067 B = 0.002073 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.707418 B =13506.090583 C =13908.257120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.249 3.751 10 O -0.584 6.584 11 C -0.117 4.117 12 C 0.102 3.898 13 N -0.593 5.593 14 C 0.629 3.371 15 O -0.531 6.531 16 C -0.148 4.148 17 C -0.076 4.076 18 C 0.023 3.977 19 C -0.074 4.074 20 C -0.099 4.099 21 C 0.043 3.957 22 C 0.030 3.970 23 C -0.071 4.071 24 O -0.306 6.306 25 C 0.213 3.787 26 O -0.307 6.307 27 C 0.093 3.907 28 H 0.272 0.728 29 H 0.386 0.614 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.086 0.914 38 H 0.133 0.867 39 H 0.067 0.933 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.233 -22.635 -6.268 23.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.578 4.578 8 H 0.087 0.913 9 C 0.208 3.792 10 O -0.393 6.393 11 C -0.155 4.155 12 C -0.021 4.021 13 N -0.324 5.324 14 C 0.416 3.584 15 O -0.410 6.410 16 C -0.151 4.151 17 C -0.079 4.079 18 C 0.023 3.977 19 C -0.092 4.092 20 C -0.118 4.118 21 C -0.001 4.001 22 C -0.014 4.014 23 C -0.090 4.090 24 O -0.223 6.223 25 C 0.101 3.899 26 O -0.223 6.223 27 C -0.027 4.027 28 H 0.082 0.918 29 H 0.237 0.763 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.167 0.833 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.104 0.896 38 H 0.151 0.849 39 H 0.085 0.915 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.792 -22.869 -6.599 23.815 hybrid contribution 0.046 1.134 -0.398 1.202 sum 0.838 -21.735 -6.997 22.849 Atomic orbital electron populations 1.69631 1.06043 1.28107 1.49328 1.25100 0.95043 0.99865 0.93278 0.86369 0.79843 0.82392 0.78209 1.20401 1.20981 1.19633 1.21473 0.94081 0.89994 1.52223 0.91315 1.19652 0.85741 0.91689 0.82089 1.86078 1.51165 1.50844 1.51239 1.22636 0.97878 0.95297 0.99698 1.22079 0.89280 0.95826 0.94875 1.48614 1.27916 1.10650 1.45215 1.14329 0.81671 0.82237 0.80149 1.90881 1.39031 1.62556 1.48560 1.20974 1.00727 0.92433 1.00938 1.18739 0.99834 0.90383 0.98916 1.15549 1.02086 0.86267 0.93793 1.21110 0.98012 0.91385 0.98729 1.19982 1.01686 0.94525 0.95583 1.20061 1.01186 0.82510 0.96377 1.19500 1.01356 0.92658 0.87877 1.20106 1.00410 0.90315 0.98165 1.87407 1.70039 1.21409 1.43417 1.25681 0.99787 0.85678 0.78754 1.87354 1.89119 1.22891 1.22910 1.23457 1.03154 0.76111 1.00012 0.91816 0.76286 0.90459 0.90200 0.91898 0.92361 0.83349 0.83820 0.83856 0.89608 0.84947 0.91509 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.25 10.71 55.43 0.59 -22.66 16 2 C 0.07 1.79 5.26 -17.82 -0.09 1.70 16 3 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.54 -13.56 8.26 -34.44 -0.28 -13.84 16 8 H 0.07 1.69 7.79 -52.48 -0.41 1.28 16 9 C 0.25 5.83 0.89 -89.50 -0.08 5.75 16 10 O -0.58 -14.55 13.20 -35.23 -0.47 -15.01 16 11 C -0.12 -2.22 6.12 -24.90 -0.15 -2.38 16 12 C 0.10 1.77 6.45 -3.07 -0.02 1.75 16 13 N -0.59 -12.21 3.32 -173.22 -0.58 -12.79 16 14 C 0.63 13.09 7.70 -14.34 -0.11 12.98 16 15 O -0.53 -12.85 17.35 5.17 0.09 -12.76 16 16 C -0.15 -2.54 12.77 -38.84 -0.50 -3.03 16 17 C -0.08 -1.09 13.24 -38.84 -0.51 -1.60 16 18 C 0.02 0.27 5.75 -106.69 -0.61 -0.34 16 19 C -0.07 -0.68 9.75 -39.13 -0.38 -1.06 16 20 C -0.10 -0.83 10.04 -39.53 -0.40 -1.23 16 21 C 0.04 0.42 7.16 -38.84 -0.28 0.15 16 22 C 0.03 0.32 7.13 -39.14 -0.28 0.04 16 23 C -0.07 -0.78 9.77 -39.00 -0.38 -1.16 16 24 O -0.31 -3.00 11.41 -45.82 -0.52 -3.53 16 25 C 0.21 1.35 8.88 101.05 0.90 2.25 16 26 O -0.31 -2.77 11.40 -45.33 -0.52 -3.29 16 27 C 0.09 2.19 5.52 -2.41 -0.01 2.17 16 28 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.39 9.96 7.18 45.56 0.33 10.28 16 30 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.08 1.41 8.03 -51.93 -0.42 0.99 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.15 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 36 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 37 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 1.58 8.04 -51.93 -0.42 1.16 16 40 H 0.09 2.32 7.50 -51.93 -0.39 1.93 16 LS Contribution 354.67 15.07 5.34 5.34 Total: -1.00 -30.46 354.67 -8.09 -38.55 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -3.82 Total: 9.15 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -3.20 Total: 2.14 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: 0.02 Total: -35.45 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -1.41 Total: -34.58 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.46 -8.09 -38.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015629.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.128 kcal (2) G-P(sol) polarization free energy of solvation -30.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds