Wall clock time and date at job start Tue Mar 31 2020 05:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99614 * 2 1 4 4 H 1.48498 * 109.47190 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47342 * 299.99759 * 3 2 1 6 6 H 1.48499 * 109.47154 * 59.99715 * 3 2 1 7 7 C 1.37867 * 120.00090 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99927 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00359 * 0.02562 * 7 2 1 10 10 O 1.42903 * 110.63676 * 56.85901 * 9 7 2 11 11 C 1.55159 * 110.72179 * 179.97438 * 9 7 2 12 12 C 1.54908 * 101.58138 * 154.04491 * 11 9 7 13 13 N 1.47429 * 104.83252 * 322.99247 * 12 11 9 14 14 C 1.34774 * 125.64872 * 204.09249 * 13 12 11 15 15 O 1.21718 * 119.99943 * 180.02562 * 14 13 12 16 16 C 1.43204 * 119.99889 * 0.02562 * 14 13 12 17 17 C 7.96402 * 83.43374 * 155.71100 * 2 1 3 18 18 C 9.32272 * 85.54357 * 157.86331 * 2 1 3 19 19 C 1.39946 * 120.11424 * 322.18949 * 18 17 16 20 20 C 1.37719 * 119.98072 * 179.97438 * 19 18 17 21 21 C 1.38892 * 120.24943 * 359.97438 * 20 19 18 22 22 C 1.39587 * 120.09717 * 359.73172 * 21 20 19 23 23 C 1.38083 * 120.00357 * 0.54844 * 22 21 20 24 24 O 1.36538 * 108.58890 * 179.80073 * 22 21 20 25 25 C 1.43974 * 105.52634 * 343.08456 * 24 22 21 26 26 O 1.36391 * 131.32799 * 180.02562 * 21 20 19 27 27 C 1.47025 * 108.70261 * 24.35423 * 13 12 11 28 28 H 0.97002 * 120.00445 * 0.02562 * 1 2 3 29 29 H 0.96696 * 114.00023 * 303.14411 * 10 9 7 30 30 H 1.08995 * 111.00486 * 35.97074 * 11 9 7 31 31 H 1.08999 * 111.03907 * 272.13302 * 11 9 7 32 32 H 1.08998 * 110.37104 * 204.15620 * 12 11 9 33 33 H 1.09004 * 110.36779 * 81.82868 * 12 11 9 34 34 H 1.08001 * 120.01021 * 0.02562 * 19 18 17 35 35 H 1.07997 * 119.87831 * 179.97438 * 20 19 18 36 36 H 1.08002 * 120.06019 * 179.73212 * 23 22 21 37 37 H 1.09000 * 110.56210 * 268.39212 * 25 24 22 38 38 H 1.09004 * 110.69008 * 145.60343 * 25 24 22 39 39 H 1.09002 * 109.87957 * 118.13000 * 27 13 12 40 40 H 1.08990 * 109.88410 * 239.29642 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 0.3666 -2.5700 -1.1196 11 6 2.2335 -3.7001 0.0005 12 6 1.3743 -4.8047 0.6647 13 7 0.5906 -4.1032 1.6978 14 6 0.0656 -4.6673 2.8035 15 8 -0.5669 -3.9885 3.5914 16 6 0.2519 -6.0654 3.0515 17 6 0.4045 -7.2114 3.2544 18 6 0.5908 -8.6094 3.5023 19 6 -0.2829 -9.2939 4.3548 20 6 -0.1014 -10.6385 4.5909 21 6 0.9463 -11.3201 3.9853 22 6 1.8181 -10.6455 3.1290 23 6 1.6464 -9.2961 2.8917 24 8 2.7525 -11.5307 2.6734 25 6 2.6853 -12.6566 3.5682 26 8 1.3311 -12.6267 4.0559 27 6 0.4713 -2.6876 1.3190 28 1 -0.4851 0.8400 -0.0004 29 1 -0.2680 -1.8419 -1.1664 30 1 3.1183 -3.4811 0.5982 31 1 2.5106 -3.9790 -1.0161 32 1 2.0140 -5.5598 1.1214 33 1 0.7108 -5.2620 -0.0694 34 1 -1.0996 -8.7680 4.8268 35 1 -0.7764 -11.1650 5.2494 36 1 2.3230 -8.7723 2.2327 37 1 3.3910 -12.5352 4.3900 38 1 2.8789 -13.5862 3.0328 39 1 -0.5776 -2.4305 1.1716 40 1 0.9038 -2.0581 2.0965 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844015630.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:40 Heat of formation + Delta-G solvation = -56.951673 kcal Electronic energy + Delta-G solvation = -26260.678027 eV Core-core repulsion = 22201.396367 eV Total energy + Delta-G solvation = -4059.281660 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.114 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -42.56538 -39.48528 -38.49037 -37.28509 -36.72424 -34.41779 -33.74109 -32.20928 -31.06172 -30.47409 -29.82394 -27.96831 -26.41301 -25.61343 -24.06669 -23.32050 -23.00227 -21.10439 -19.65440 -18.86605 -18.31907 -17.75925 -17.42581 -17.20498 -16.82494 -15.79093 -15.52068 -15.14048 -14.90409 -14.89257 -14.46271 -14.31437 -14.30288 -13.61652 -13.42011 -13.25642 -13.17118 -13.05968 -12.94450 -12.32293 -11.98669 -11.75097 -11.70208 -11.55794 -11.12613 -10.87146 -10.77412 -10.67813 -10.59458 -10.50828 -10.21253 -9.86168 -9.40445 -9.25004 -8.71935 -8.39805 -8.35961 -8.03073 -6.33985 -4.42719 0.25604 0.79118 1.91299 2.11206 2.48430 2.98711 3.15475 3.18105 3.26904 3.29619 3.31686 3.96485 4.00800 4.13780 4.22966 4.24921 4.46982 4.64143 4.72234 4.79483 4.92225 5.05617 5.10772 5.33187 5.58613 5.61742 5.66543 5.72883 5.79514 5.88782 5.95958 5.99027 6.11466 6.42610 6.65317 6.69132 6.76467 6.81412 7.14727 7.19451 7.29302 7.69026 7.91809 8.00291 8.46972 8.61459 9.26446 9.38766 10.73954 Molecular weight = 329.11amu Principal moments of inertia in cm(-1) A = 0.026396 B = 0.002169 C = 0.002075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.502241 B =12903.535355 C =13490.786289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.070 3.930 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.537 4.537 8 H 0.069 0.931 9 C 0.249 3.751 10 O -0.586 6.586 11 C -0.117 4.117 12 C 0.099 3.901 13 N -0.594 5.594 14 C 0.628 3.372 15 O -0.532 6.532 16 C -0.149 4.149 17 C -0.075 4.075 18 C 0.023 3.977 19 C -0.075 4.075 20 C -0.100 4.100 21 C 0.043 3.957 22 C 0.031 3.969 23 C -0.070 4.070 24 O -0.306 6.306 25 C 0.213 3.787 26 O -0.307 6.307 27 C 0.101 3.899 28 H 0.271 0.729 29 H 0.387 0.613 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.086 0.914 38 H 0.133 0.867 39 H 0.070 0.930 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.479 -22.640 6.653 23.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.575 4.575 8 H 0.087 0.913 9 C 0.208 3.792 10 O -0.396 6.396 11 C -0.155 4.155 12 C -0.024 4.024 13 N -0.326 5.326 14 C 0.415 3.585 15 O -0.411 6.411 16 C -0.152 4.152 17 C -0.078 4.078 18 C 0.022 3.978 19 C -0.093 4.093 20 C -0.118 4.118 21 C -0.001 4.001 22 C -0.013 4.013 23 C -0.089 4.089 24 O -0.222 6.222 25 C 0.101 3.899 26 O -0.223 6.223 27 C -0.020 4.020 28 H 0.081 0.919 29 H 0.239 0.761 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.166 0.834 35 H 0.161 0.839 36 H 0.163 0.837 37 H 0.104 0.896 38 H 0.151 0.849 39 H 0.088 0.912 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.351 -22.888 6.871 24.130 hybrid contribution 0.233 1.136 0.178 1.173 sum 3.583 -21.752 7.049 23.144 Atomic orbital electron populations 1.69576 1.06036 1.28012 1.49875 1.25087 0.95074 0.99886 0.93273 0.86318 0.80041 0.82581 0.77805 1.19555 1.20701 1.20718 1.21549 0.93797 0.89958 1.52187 0.91305 1.19498 0.85842 0.92249 0.81592 1.86080 1.51447 1.53466 1.48598 1.22770 0.97659 0.94647 1.00459 1.22414 0.94087 0.95765 0.90106 1.48663 1.50963 1.12699 1.20244 1.14344 0.80480 0.82095 0.81575 1.90879 1.41477 1.62391 1.46349 1.20950 1.01153 0.92759 1.00294 1.18753 0.98348 0.90602 1.00088 1.15539 0.96049 0.86844 0.99330 1.21123 0.98757 0.92785 0.96660 1.19975 0.97484 0.93221 1.01159 1.20063 0.98166 0.82952 0.98939 1.19499 0.92187 0.91834 0.97759 1.20093 0.98533 0.89184 1.01054 1.87402 1.56026 1.27890 1.50855 1.25673 0.82500 0.90940 0.90778 1.87346 1.29947 1.22674 1.82316 1.23212 1.02183 0.76693 0.99941 0.91857 0.76092 0.90346 0.90198 0.91820 0.91230 0.83446 0.83880 0.83745 0.89633 0.84920 0.91171 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.33 10.97 55.43 0.61 -22.72 16 2 C 0.07 1.78 5.28 -17.82 -0.09 1.69 16 3 Si 0.91 20.07 29.54 -169.99 -5.02 15.05 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.54 -13.66 8.12 -34.44 -0.28 -13.94 16 8 H 0.07 1.72 7.76 -52.48 -0.41 1.31 16 9 C 0.25 5.87 0.86 -89.93 -0.08 5.79 16 10 O -0.59 -14.47 13.07 -35.23 -0.46 -14.93 16 11 C -0.12 -2.27 6.23 -24.58 -0.15 -2.42 16 12 C 0.10 1.74 6.66 -2.53 -0.02 1.72 16 13 N -0.59 -12.24 3.33 -173.35 -0.58 -12.82 16 14 C 0.63 12.88 7.70 -14.33 -0.11 12.77 16 15 O -0.53 -12.64 17.42 5.17 0.09 -12.55 16 16 C -0.15 -2.50 12.49 -38.84 -0.49 -2.99 16 17 C -0.08 -1.06 13.24 -38.84 -0.51 -1.57 16 18 C 0.02 0.26 5.75 -106.69 -0.61 -0.36 16 19 C -0.08 -0.69 9.75 -39.13 -0.38 -1.07 16 20 C -0.10 -0.83 10.04 -39.53 -0.40 -1.22 16 21 C 0.04 0.42 7.16 -38.84 -0.28 0.14 16 22 C 0.03 0.32 7.14 -39.13 -0.28 0.05 16 23 C -0.07 -0.73 9.77 -38.99 -0.38 -1.11 16 24 O -0.31 -2.94 11.40 -45.81 -0.52 -3.46 16 25 C 0.21 1.33 8.89 101.05 0.90 2.23 16 26 O -0.31 -2.74 11.39 -45.33 -0.52 -3.25 16 27 C 0.10 2.38 5.54 -3.06 -0.02 2.36 16 28 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.39 9.86 6.98 45.56 0.32 10.18 16 30 H 0.08 1.45 8.03 -51.93 -0.42 1.03 16 31 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 32 H 0.06 0.94 7.69 -51.93 -0.40 0.54 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 36 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.13 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 1.80 8.07 -51.93 -0.42 1.38 16 40 H 0.07 1.83 7.82 -51.93 -0.41 1.42 16 LS Contribution 354.46 15.07 5.34 5.34 Total: -1.00 -30.37 354.46 -8.06 -38.43 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -3.82 Total: 8.85 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: -3.18 Total: 2.07 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.03 Total: -35.54 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -1.41 Total: -34.19 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.37 -8.06 -38.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844015630.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.523 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds