Wall clock time and date at job start Tue Mar 31 2020 05:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33481 * 116.93621 * 2 1 4 4 C 1.41803 * 119.80136 * 0.89037 * 3 2 1 5 5 O 1.21735 * 120.00188 * 94.56087 * 4 3 2 6 6 N 1.34781 * 119.99640 * 274.56139 * 4 3 2 7 7 C 1.46925 * 120.62957 * 354.70625 * 6 4 3 8 8 C 1.53202 * 108.77410 * 126.43515 * 7 6 4 9 9 C 1.53045 * 109.31136 * 54.62880 * 8 7 6 10 10 C 1.53033 * 109.54059 * 298.63811 * 9 8 7 11 11 H 1.08997 * 109.49788 * 301.38311 * 10 9 8 12 12 C 1.50704 * 109.49937 * 181.31683 * 10 9 8 13 13 H 1.07997 * 119.99708 * 0.06529 * 12 10 9 14 14 C 1.37873 * 120.00358 * 180.33788 * 12 10 9 15 15 N 1.31513 * 120.00247 * 179.71996 * 14 12 10 16 16 Si 1.86806 * 119.99738 * 359.72557 * 14 12 10 17 17 H 1.48503 * 109.46774 * 90.00157 * 16 14 12 18 18 H 1.48496 * 109.46952 * 209.99565 * 16 14 12 19 19 H 1.48493 * 109.47208 * 330.00029 * 16 14 12 20 20 C 1.46935 * 120.59932 * 174.72654 * 6 4 3 21 21 S 1.76674 * 120.39865 * 180.61542 * 3 2 1 22 22 O 1.42098 * 104.57428 * 102.87200 * 21 3 2 23 23 O 1.42102 * 104.57205 * 231.36038 * 21 3 2 24 24 C 1.82195 * 102.70833 * 347.11532 * 21 3 2 25 25 C 1.53851 * 106.98321 * 42.79589 * 24 21 3 26 26 O 1.33125 * 116.93894 * 180.27897 * 2 1 3 27 27 H 1.09004 * 109.46894 * 94.48534 * 1 2 3 28 28 H 1.09000 * 109.47095 * 214.47857 * 1 2 3 29 29 H 1.08991 * 109.47791 * 334.48099 * 1 2 3 30 30 H 1.08996 * 109.59133 * 6.64629 * 7 6 4 31 31 H 1.08997 * 109.58660 * 246.21537 * 7 6 4 32 32 H 1.08999 * 109.49298 * 294.68212 * 8 7 6 33 33 H 1.08996 * 109.49752 * 174.58554 * 8 7 6 34 34 H 1.09004 * 109.45667 * 178.61190 * 9 8 7 35 35 H 1.08998 * 109.44363 * 58.65339 * 9 8 7 36 36 H 0.97003 * 120.00116 * 179.97438 * 15 14 12 37 37 H 1.09009 * 109.55867 * 113.76830 * 20 6 4 38 38 H 1.08991 * 109.62063 * 353.33721 * 20 6 4 39 39 H 1.08995 * 109.95401 * 162.16430 * 24 21 3 40 40 H 1.08998 * 109.95025 * 283.43292 * 24 21 3 41 41 H 1.08999 * 109.54183 * 55.84146 * 25 24 21 42 42 H 1.08997 * 109.54414 * 176.10462 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1116 1.1900 0.0000 4 6 1.3340 2.3756 0.0191 5 8 1.0849 2.9232 1.0774 6 7 0.8708 2.8963 -1.1345 7 6 1.2579 2.3147 -2.4270 8 6 -0.0111 1.9923 -3.2225 9 6 -0.8730 3.2521 -3.3329 10 6 -1.2847 3.7149 -1.9335 11 1 -1.8348 2.9175 -1.4338 12 6 -2.1600 4.9366 -2.0449 13 1 -2.3999 5.3421 -3.0166 14 6 -2.6499 5.5399 -0.9061 15 7 -3.4092 6.6093 -1.0031 16 14 -2.2349 4.8384 0.7748 17 1 -0.9869 5.4660 1.2787 18 1 -3.3468 5.1213 1.7175 19 1 -2.0410 3.3703 0.6643 20 6 -0.0306 4.0566 -1.1227 21 16 3.8751 1.2967 -0.0164 22 8 4.2006 1.6307 -1.3586 23 8 4.1904 2.1703 1.0592 24 6 4.3835 -0.4104 0.3668 25 6 3.4763 -1.3442 -0.4529 26 8 2.1101 -1.1868 -0.0058 27 1 -0.3633 -0.0804 -1.0246 28 1 -0.3633 -0.8471 0.5818 29 1 -0.3634 0.9273 0.4427 30 1 1.8270 1.4002 -2.2605 31 1 1.8653 3.0296 -2.9821 32 1 -0.5727 1.2110 -2.7104 33 1 0.2623 1.6499 -4.2205 34 1 -1.7649 3.0316 -3.9195 35 1 -0.3019 4.0407 -3.8228 36 1 -3.7542 7.0335 -0.2018 37 1 0.4720 4.9138 -1.5710 38 1 -0.3119 4.2912 -0.0961 39 1 5.4251 -0.5608 0.0833 40 1 4.2546 -0.6068 1.4312 41 1 3.5462 -1.0854 -1.5094 42 1 3.7906 -2.3777 -0.3077 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855255082.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:35 Heat of formation + Delta-G solvation = -105.008030 kcal Electronic energy + Delta-G solvation = -28447.053087 eV Core-core repulsion = 24521.131499 eV Total energy + Delta-G solvation = -3925.921588 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.94113 -39.64939 -37.34759 -36.92403 -36.14291 -34.25033 -33.21021 -32.28213 -31.81469 -30.48451 -28.63111 -25.67419 -25.14838 -24.52127 -22.05238 -21.66497 -20.23403 -19.19798 -18.93364 -18.17688 -17.62673 -16.87663 -16.65442 -16.46914 -15.90029 -15.66749 -15.35683 -14.57309 -14.48446 -14.19915 -13.96397 -13.83217 -13.56026 -13.37944 -13.01771 -12.87405 -12.71200 -12.56208 -12.33487 -12.24487 -12.21219 -12.12646 -12.05476 -11.32369 -11.16301 -11.05478 -10.91587 -10.59462 -10.36841 -10.07865 -9.84408 -9.73044 -9.37868 -9.13984 -9.08109 -8.57782 -8.01408 -6.09269 -4.10711 -0.37457 0.87189 2.07688 2.38498 2.92252 3.23936 3.39355 3.43354 3.47230 3.56364 3.66749 3.92746 4.20721 4.34831 4.43129 4.53235 4.72837 4.76865 4.90490 5.08419 5.18301 5.21319 5.23527 5.28623 5.40022 5.58964 5.82242 5.92907 6.04408 6.12250 6.20987 6.41859 6.56009 6.60611 6.68398 6.77950 6.92238 7.15406 7.43151 7.72811 7.87938 8.46930 8.58387 8.94161 9.52397 11.02791 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.019049 B = 0.004847 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.556169 B = 5775.371387 C = 6040.896426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.273 3.727 3 C -0.828 4.828 4 C 0.591 3.409 5 O -0.528 6.528 6 N -0.598 5.598 7 C 0.110 3.890 8 C -0.137 4.137 9 C -0.101 4.101 10 C 0.006 3.994 11 H 0.030 0.970 12 C -0.516 4.516 13 H 0.078 0.922 14 C 0.074 3.926 15 N -0.896 5.896 16 Si 0.878 3.122 17 H -0.270 1.270 18 H -0.295 1.295 19 H -0.266 1.266 20 C 0.100 3.900 21 S 2.496 3.504 22 O -0.919 6.919 23 O -0.910 6.910 24 C -0.655 4.655 25 C 0.072 3.928 26 O -0.302 6.302 27 H 0.106 0.894 28 H 0.092 0.908 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.265 0.735 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.159 0.841 40 H 0.153 0.847 41 H 0.099 0.901 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.468 -21.435 -1.366 26.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.220 3.780 3 C -0.919 4.919 4 C 0.377 3.623 5 O -0.406 6.406 6 N -0.331 5.331 7 C -0.013 4.013 8 C -0.175 4.175 9 C -0.138 4.138 10 C -0.013 4.013 11 H 0.048 0.952 12 C -0.554 4.554 13 H 0.096 0.904 14 C -0.129 4.129 15 N -0.533 5.533 16 Si 0.707 3.293 17 H -0.197 1.197 18 H -0.223 1.223 19 H -0.191 1.191 20 C -0.021 4.021 21 S 2.671 3.329 22 O -0.916 6.916 23 O -0.907 6.907 24 C -0.783 4.783 25 C -0.002 4.002 26 O -0.213 6.213 27 H 0.125 0.875 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.177 0.823 40 H 0.171 0.829 41 H 0.117 0.883 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 15.650 -20.445 -0.816 25.760 hybrid contribution -0.016 -0.783 1.145 1.388 sum 15.633 -21.228 0.330 26.365 Atomic orbital electron populations 1.21491 0.86644 1.06053 1.05422 1.20757 0.95294 0.82293 0.79608 1.30395 1.26871 1.00096 1.34513 1.15415 0.79840 0.82662 0.84431 1.90841 1.58091 1.61505 1.30124 1.48446 1.47198 1.32233 1.05217 1.21710 0.96760 0.98660 0.84197 1.22039 0.96551 0.99696 0.99214 1.21446 0.98348 0.95121 0.98926 1.19483 0.91941 0.97834 0.92067 0.95219 1.20950 1.29059 1.10367 0.95008 0.90413 1.25031 0.94345 0.94460 0.99041 1.69887 1.33988 1.19987 1.29435 0.87025 0.77442 0.80614 0.84177 1.19658 1.22287 1.19084 1.22684 0.90889 0.85977 1.02527 1.05726 0.74515 0.76891 0.75739 1.93625 1.82508 1.80549 1.34880 1.93646 1.82399 1.59041 1.55578 1.31093 1.11121 1.23897 1.12140 1.23458 0.76052 1.02937 0.97800 1.85534 1.29222 1.28294 1.78212 0.87544 0.88886 0.87954 0.90834 0.90909 0.92297 0.91526 0.92186 0.92335 0.92499 0.91239 0.90279 0.82338 0.82928 0.88310 0.84096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.66 36.00 0.35 -1.30 16 2 C 0.27 3.15 6.46 -35.97 -0.23 2.92 16 3 C -0.83 -12.36 3.44 -39.88 -0.14 -12.50 16 4 C 0.59 11.91 4.61 -14.90 -0.07 11.84 16 5 O -0.53 -13.00 16.45 5.16 0.08 -12.91 16 6 N -0.60 -11.85 2.97 -176.10 -0.52 -12.37 16 7 C 0.11 1.72 6.29 -3.71 -0.02 1.69 16 8 C -0.14 -2.00 6.08 -26.60 -0.16 -2.16 16 9 C -0.10 -1.88 5.11 -26.69 -0.14 -2.01 16 10 C 0.01 0.15 1.84 -91.65 -0.17 -0.02 16 11 H 0.03 0.71 7.21 -51.93 -0.37 0.33 16 12 C -0.52 -14.29 9.15 -34.44 -0.32 -14.61 16 13 H 0.08 2.30 7.99 -52.49 -0.42 1.88 16 14 C 0.07 2.16 5.45 -17.82 -0.10 2.06 16 15 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 16 Si 0.88 23.40 24.32 -169.99 -4.13 19.27 16 17 H -0.27 -7.43 6.91 56.52 0.39 -7.04 16 18 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 19 H -0.27 -6.87 6.54 56.52 0.37 -6.50 16 20 C 0.10 2.32 5.09 -3.70 -0.02 2.30 16 21 S 2.50 31.18 5.46 -107.50 -0.59 30.59 16 22 O -0.92 -12.59 17.27 -57.49 -0.99 -13.58 16 23 O -0.91 -15.60 17.87 -57.49 -1.03 -16.63 16 24 C -0.65 -3.65 6.85 37.60 0.26 -3.39 16 25 C 0.07 0.33 7.01 37.60 0.26 0.59 16 26 O -0.30 -2.40 9.94 -11.75 -0.12 -2.52 16 27 H 0.11 1.10 7.14 -51.93 -0.37 0.73 16 28 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.10 1.62 6.42 -51.93 -0.33 1.28 16 30 H 0.07 0.96 5.52 -51.93 -0.29 0.68 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 0.81 7.14 -51.93 -0.37 0.44 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.27 7.72 8.31 -40.82 -0.34 7.38 16 37 H 0.07 1.61 8.14 -51.92 -0.42 1.19 16 38 H 0.08 2.06 2.34 -51.93 -0.12 1.93 16 39 H 0.16 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.15 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.14 0.16 8.14 -51.93 -0.42 -0.26 16 LS Contribution 339.31 15.07 5.11 5.11 Total: -1.00 -39.24 339.31 -7.58 -46.83 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: -5.68 Total: -2.41 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: -0.49 Total: -14.58 kcal Atomic # 7 Polarization: -39.42 SS G_CDS: 0.25 Total: -39.17 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -2.05 Total: -45.64 kcal Atomic # 14 Polarization: 23.40 SS G_CDS: -4.13 Total: 19.27 kcal Atomic # 16 Polarization: 31.18 SS G_CDS: -0.59 Total: 30.59 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -39.24 -7.58 -46.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255082.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.183 kcal (2) G-P(sol) polarization free energy of solvation -39.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds