Wall clock time and date at job start Tue Mar 31 2020 05:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33481 * 116.93746 * 2 1 4 4 C 1.41796 * 119.80201 * 0.88893 * 3 2 1 5 5 O 1.21736 * 120.00117 * 267.70827 * 4 3 2 6 6 N 1.34778 * 119.99916 * 87.70956 * 4 3 2 7 7 C 1.46932 * 120.62889 * 4.76725 * 6 4 3 8 8 C 1.52764 * 109.00062 * 233.58261 * 7 6 4 9 9 C 1.53038 * 109.38174 * 305.58396 * 8 7 6 10 10 C 1.53038 * 109.54043 * 61.24794 * 9 8 7 11 11 H 1.09000 * 109.49865 * 58.57826 * 10 9 8 12 12 C 1.50699 * 109.50055 * 178.68291 * 10 9 8 13 13 H 1.07996 * 119.99975 * 359.83079 * 12 10 9 14 14 C 1.37874 * 120.00131 * 179.84072 * 12 10 9 15 15 N 1.31514 * 119.99812 * 359.97438 * 14 12 10 16 16 Si 1.86796 * 120.00040 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47230 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47195 * 119.99825 * 16 14 12 19 19 H 1.48507 * 109.46688 * 239.99726 * 16 14 12 20 20 C 1.46924 * 120.62944 * 185.03751 * 6 4 3 21 21 S 1.76672 * 120.39218 * 180.86836 * 3 2 1 22 22 O 1.42100 * 104.57560 * 102.62456 * 21 3 2 23 23 O 1.42104 * 104.57369 * 231.06397 * 21 3 2 24 24 C 1.82194 * 102.71243 * 346.86430 * 21 3 2 25 25 C 1.53855 * 106.98480 * 42.79608 * 24 21 3 26 26 O 1.33127 * 116.93871 * 179.73958 * 2 1 3 27 27 H 1.09004 * 109.47218 * 85.01215 * 1 2 3 28 28 H 1.08998 * 109.47044 * 325.01294 * 1 2 3 29 29 H 1.08998 * 109.46881 * 205.01483 * 1 2 3 30 30 H 1.08998 * 109.58515 * 353.41371 * 7 6 4 31 31 H 1.08995 * 109.58850 * 113.84105 * 7 6 4 32 32 H 1.09000 * 109.55696 * 185.55523 * 8 7 6 33 33 H 1.09000 * 109.36346 * 65.49845 * 8 7 6 34 34 H 1.09001 * 109.46628 * 301.21938 * 9 8 7 35 35 H 1.09004 * 109.44526 * 181.26049 * 9 8 7 36 36 H 0.97001 * 120.00370 * 180.02562 * 15 14 12 37 37 H 1.08999 * 109.59096 * 246.15654 * 20 6 4 38 38 H 1.09000 * 109.58345 * 6.44555 * 20 6 4 39 39 H 1.08995 * 109.95541 * 162.16465 * 24 21 3 40 40 H 1.08999 * 109.94851 * 283.34161 * 24 21 3 41 41 H 1.08996 * 109.53993 * 55.83902 * 25 24 21 42 42 H 1.09001 * 109.54400 * 176.10766 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1117 1.1900 0.0000 4 6 1.3342 2.3756 0.0191 5 8 1.0211 2.9151 -1.0263 6 7 0.9418 2.9053 1.1947 7 6 1.3977 2.3264 2.4659 8 6 0.1809 2.0163 3.3359 9 6 -0.6691 3.2796 3.4891 10 6 -1.1607 3.7357 2.1134 11 1 -1.7410 2.9372 1.6513 12 6 -2.0242 4.9610 2.2686 13 1 -2.2069 5.3720 3.2504 14 6 -2.5811 5.5572 1.1571 15 7 -2.3583 5.0569 -0.0385 16 14 -3.6508 7.0764 1.3494 17 1 -3.7448 7.4370 2.7869 18 1 -3.0491 8.2044 0.5940 19 1 -5.0096 6.7951 0.8202 20 6 0.0453 4.0688 1.2294 21 16 3.8751 1.2965 -0.0231 22 8 4.1958 1.6273 -1.3673 23 8 4.1944 2.1735 1.0485 24 6 4.3849 -0.4097 0.3622 25 6 3.4746 -1.3455 -0.4519 26 8 2.1102 -1.1868 0.0054 27 1 -0.3634 0.0894 -1.0238 28 1 -0.3633 0.8419 0.5892 29 1 -0.3633 -0.9313 0.4345 30 1 1.9501 1.4071 2.2715 31 1 2.0406 3.0392 2.9822 32 1 0.5113 1.6788 4.3183 33 1 -0.4121 1.2339 2.8623 34 1 -0.0683 4.0693 3.9403 35 1 -1.5258 3.0653 4.1281 36 1 -2.7497 5.4765 -0.8206 37 1 0.5757 4.9266 1.6429 38 1 -0.2923 4.3002 0.2192 39 1 5.4255 -0.5608 0.0752 40 1 4.2615 -0.6030 1.4278 41 1 3.5407 -1.0892 -1.5092 42 1 3.7895 -2.3787 -0.3053 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855255083.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:39 Heat of formation + Delta-G solvation = -112.973478 kcal Electronic energy + Delta-G solvation = -28224.397691 eV Core-core repulsion = 24298.130695 eV Total energy + Delta-G solvation = -3926.266996 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.71642 -39.34739 -37.15670 -36.67272 -36.00581 -34.01996 -33.16927 -32.15518 -31.57461 -29.76211 -28.40306 -25.48017 -25.00403 -24.31480 -21.78019 -21.55201 -20.14724 -19.01152 -18.71478 -18.01781 -17.37359 -16.93364 -16.18701 -15.91891 -15.65033 -15.46661 -15.17651 -14.55451 -14.29430 -14.07464 -13.67168 -13.65046 -13.33653 -13.15838 -12.79733 -12.58524 -12.51242 -12.37147 -12.18932 -12.09383 -12.00838 -11.94358 -11.79185 -11.02817 -10.97666 -10.88845 -10.74801 -10.44500 -10.34392 -10.20515 -9.85945 -9.54926 -9.16496 -9.00833 -8.87121 -8.40916 -7.65260 -5.98062 -4.06288 -0.24554 1.05703 2.24641 2.54901 3.19382 3.32122 3.38476 3.40917 3.43741 3.66714 3.93635 4.06323 4.33657 4.45443 4.48055 4.72687 4.87751 4.94403 5.00261 5.30625 5.32603 5.38295 5.43304 5.49873 5.59261 5.77038 6.03114 6.12417 6.25735 6.36857 6.62586 6.70829 6.79201 6.93319 6.99882 7.21232 7.35813 7.66658 7.89266 8.02045 8.31003 8.41338 8.90038 8.98928 9.59486 11.07500 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.020881 B = 0.004114 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.583511 B = 6804.182425 C = 6949.704389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.268 3.732 3 C -0.823 4.823 4 C 0.590 3.410 5 O -0.525 6.525 6 N -0.592 5.592 7 C 0.115 3.885 8 C -0.136 4.136 9 C -0.111 4.111 10 C 0.041 3.959 11 H 0.028 0.972 12 C -0.520 4.520 13 H 0.059 0.941 14 C 0.063 3.937 15 N -0.881 5.881 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.285 1.285 20 C 0.110 3.890 21 S 2.496 3.504 22 O -0.917 6.917 23 O -0.915 6.915 24 C -0.656 4.656 25 C 0.071 3.929 26 O -0.304 6.304 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.263 0.737 37 H 0.045 0.955 38 H 0.123 0.877 39 H 0.157 0.843 40 H 0.152 0.848 41 H 0.097 0.903 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.783 -17.474 2.640 21.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.216 3.784 3 C -0.914 4.914 4 C 0.375 3.625 5 O -0.403 6.403 6 N -0.325 5.325 7 C -0.009 4.009 8 C -0.174 4.174 9 C -0.149 4.149 10 C 0.022 3.978 11 H 0.046 0.954 12 C -0.558 4.558 13 H 0.077 0.923 14 C -0.140 4.140 15 N -0.519 5.519 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.010 4.010 21 S 2.671 3.329 22 O -0.914 6.914 23 O -0.912 6.912 24 C -0.784 4.784 25 C -0.003 4.003 26 O -0.214 6.214 27 H 0.124 0.876 28 H 0.127 0.873 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.141 0.859 39 H 0.175 0.825 40 H 0.171 0.829 41 H 0.116 0.884 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 12.995 -16.595 1.785 21.153 hybrid contribution -0.757 0.230 0.275 0.838 sum 12.238 -16.365 2.061 20.538 Atomic orbital electron populations 1.21478 0.86513 1.05642 1.05901 1.20794 0.95387 0.82275 0.79981 1.30423 1.26516 1.00566 1.33917 1.15344 0.80073 0.82498 0.84553 1.90850 1.56000 1.61857 1.31549 1.48466 1.47576 1.32221 1.04252 1.21482 0.96112 0.98025 0.85292 1.21929 0.97169 0.99746 0.98536 1.21635 0.97887 0.94972 1.00390 1.18973 0.92320 0.96850 0.89646 0.95405 1.21109 1.29729 1.11772 0.93211 0.92282 1.25046 0.96259 0.97325 0.95372 1.69884 1.43958 1.40099 0.97917 0.86536 0.80209 0.83122 0.78125 1.19807 1.20965 1.21075 1.22358 0.88790 0.83533 1.06344 1.05718 0.74669 0.76766 0.75701 1.93627 1.82640 1.80402 1.34749 1.93621 1.82650 1.58935 1.55995 1.31093 1.11033 1.24214 1.12032 1.23451 0.76310 1.02705 0.97857 1.85599 1.29366 1.28682 1.77774 0.87592 0.87335 0.89412 0.91997 0.91273 0.92136 0.92388 0.92997 0.93023 0.92690 0.93706 0.85874 0.82524 0.82940 0.88448 0.84252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.43 36.01 0.34 -1.49 16 2 C 0.27 3.44 6.53 -35.97 -0.23 3.20 16 3 C -0.82 -13.30 3.36 -39.89 -0.13 -13.43 16 4 C 0.59 12.68 4.90 -14.90 -0.07 12.61 16 5 O -0.53 -13.71 16.52 5.16 0.09 -13.63 16 6 N -0.59 -12.58 2.59 -176.38 -0.46 -13.04 16 7 C 0.11 1.96 5.91 -3.93 -0.02 1.94 16 8 C -0.14 -2.19 6.06 -26.83 -0.16 -2.35 16 9 C -0.11 -2.20 5.11 -26.69 -0.14 -2.34 16 10 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 11 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 12 C -0.52 -14.05 8.56 -34.44 -0.29 -14.34 16 13 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 14 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 15 N -0.88 -25.67 11.39 55.43 0.63 -25.04 16 16 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 20 C 0.11 2.74 5.39 -3.71 -0.02 2.72 16 21 S 2.50 33.75 5.46 -107.50 -0.59 33.17 16 22 O -0.92 -15.52 17.97 -57.50 -1.03 -16.56 16 23 O -0.91 -14.78 17.27 -57.50 -0.99 -15.77 16 24 C -0.66 -4.11 6.85 37.60 0.26 -3.85 16 25 C 0.07 0.42 7.02 37.60 0.26 0.68 16 26 O -0.30 -2.77 9.95 -11.76 -0.12 -2.89 16 27 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.11 1.77 6.22 -51.93 -0.32 1.45 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.88 6.03 -51.93 -0.31 0.57 16 31 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.91 7.79 -51.93 -0.40 0.51 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 37 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.12 3.55 5.15 -51.93 -0.27 3.29 16 39 H 0.16 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.15 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.14 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 347.62 15.07 5.24 5.24 Total: -1.00 -37.38 347.62 -8.69 -46.08 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -5.92 Total: 0.28 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -0.52 Total: -14.21 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.17 Total: -38.08 kcal Atomic # 8 Polarization: -46.78 SS G_CDS: -2.06 Total: -48.84 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 33.75 SS G_CDS: -0.59 Total: 33.17 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -37.38 -8.69 -46.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255083.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.897 kcal (2) G-P(sol) polarization free energy of solvation -37.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds