Wall clock time and date at job start Tue Mar 31 2020 05:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33481 * 116.93746 * 2 1 4 4 C 1.41796 * 119.80201 * 0.88893 * 3 2 1 5 5 O 1.21736 * 120.00117 * 267.70827 * 4 3 2 6 6 N 1.34778 * 119.99916 * 87.70956 * 4 3 2 7 7 C 1.46932 * 120.62889 * 4.76725 * 6 4 3 8 8 C 1.52764 * 109.00062 * 233.58261 * 7 6 4 9 9 C 1.53038 * 109.38174 * 305.58396 * 8 7 6 10 10 C 1.53038 * 109.54043 * 61.24794 * 9 8 7 11 11 H 1.09000 * 109.49865 * 58.57826 * 10 9 8 12 12 C 1.50699 * 109.50055 * 178.68291 * 10 9 8 13 13 H 1.07996 * 119.99975 * 359.83079 * 12 10 9 14 14 C 1.37874 * 120.00131 * 179.84072 * 12 10 9 15 15 N 1.31514 * 119.99812 * 359.97438 * 14 12 10 16 16 Si 1.86796 * 120.00040 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47230 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47195 * 119.99825 * 16 14 12 19 19 H 1.48507 * 109.46688 * 239.99726 * 16 14 12 20 20 C 1.46924 * 120.62944 * 185.03751 * 6 4 3 21 21 S 1.76672 * 120.39218 * 180.86836 * 3 2 1 22 22 O 1.42100 * 104.57560 * 102.62456 * 21 3 2 23 23 O 1.42104 * 104.57369 * 231.06397 * 21 3 2 24 24 C 1.82194 * 102.71243 * 346.86430 * 21 3 2 25 25 C 1.53855 * 106.98480 * 42.79608 * 24 21 3 26 26 O 1.33127 * 116.93871 * 179.73958 * 2 1 3 27 27 H 1.09004 * 109.47218 * 85.01215 * 1 2 3 28 28 H 1.08998 * 109.47044 * 325.01294 * 1 2 3 29 29 H 1.08998 * 109.46881 * 205.01483 * 1 2 3 30 30 H 1.08998 * 109.58515 * 353.41371 * 7 6 4 31 31 H 1.08995 * 109.58850 * 113.84105 * 7 6 4 32 32 H 1.09000 * 109.55696 * 185.55523 * 8 7 6 33 33 H 1.09000 * 109.36346 * 65.49845 * 8 7 6 34 34 H 1.09001 * 109.46628 * 301.21938 * 9 8 7 35 35 H 1.09004 * 109.44526 * 181.26049 * 9 8 7 36 36 H 0.97001 * 120.00370 * 180.02562 * 15 14 12 37 37 H 1.08999 * 109.59096 * 246.15654 * 20 6 4 38 38 H 1.09000 * 109.58345 * 6.44555 * 20 6 4 39 39 H 1.08995 * 109.95541 * 162.16465 * 24 21 3 40 40 H 1.08999 * 109.94851 * 283.34161 * 24 21 3 41 41 H 1.08996 * 109.53993 * 55.83902 * 25 24 21 42 42 H 1.09001 * 109.54400 * 176.10766 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1117 1.1900 0.0000 4 6 1.3342 2.3756 0.0191 5 8 1.0211 2.9151 -1.0263 6 7 0.9418 2.9053 1.1947 7 6 1.3977 2.3264 2.4659 8 6 0.1809 2.0163 3.3359 9 6 -0.6691 3.2796 3.4891 10 6 -1.1607 3.7357 2.1134 11 1 -1.7410 2.9372 1.6513 12 6 -2.0242 4.9610 2.2686 13 1 -2.2069 5.3720 3.2504 14 6 -2.5811 5.5572 1.1571 15 7 -2.3583 5.0569 -0.0385 16 14 -3.6508 7.0764 1.3494 17 1 -3.7448 7.4370 2.7869 18 1 -3.0491 8.2044 0.5940 19 1 -5.0096 6.7951 0.8202 20 6 0.0453 4.0688 1.2294 21 16 3.8751 1.2965 -0.0231 22 8 4.1958 1.6273 -1.3673 23 8 4.1944 2.1735 1.0485 24 6 4.3849 -0.4097 0.3622 25 6 3.4746 -1.3455 -0.4519 26 8 2.1102 -1.1868 0.0054 27 1 -0.3634 0.0894 -1.0238 28 1 -0.3633 0.8419 0.5892 29 1 -0.3633 -0.9313 0.4345 30 1 1.9501 1.4071 2.2715 31 1 2.0406 3.0392 2.9822 32 1 0.5113 1.6788 4.3183 33 1 -0.4121 1.2339 2.8623 34 1 -0.0683 4.0693 3.9403 35 1 -1.5258 3.0653 4.1281 36 1 -2.7497 5.4765 -0.8206 37 1 0.5757 4.9266 1.6429 38 1 -0.2923 4.3002 0.2192 39 1 5.4255 -0.5608 0.0752 40 1 4.2615 -0.6030 1.4278 41 1 3.5407 -1.0892 -1.5092 42 1 3.7895 -2.3787 -0.3053 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855255083.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:38 Heat of formation + Delta-G solvation = -143.572155 kcal Electronic energy + Delta-G solvation = -28225.724549 eV Core-core repulsion = 24298.130695 eV Total energy + Delta-G solvation = -3927.593854 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.81771 -40.70096 -38.40764 -38.20883 -37.08047 -35.49074 -34.71564 -33.41656 -32.78293 -31.54557 -29.56875 -27.06991 -26.53607 -25.50624 -23.45049 -22.75688 -21.45875 -20.41202 -19.76729 -19.06981 -18.84859 -18.16005 -17.89510 -17.12071 -16.71629 -16.57605 -16.48135 -16.26495 -15.71902 -15.25413 -15.13365 -14.90735 -14.60055 -14.37675 -14.26716 -14.08965 -13.85800 -13.55352 -13.40503 -13.31308 -13.20387 -13.19349 -12.92212 -12.73312 -12.62586 -12.30412 -12.22105 -11.96720 -11.82524 -11.71577 -11.62644 -11.19574 -10.95736 -10.78251 -10.54115 -10.26672 -9.41877 -8.12009 -6.28471 -1.14470 0.01935 1.36642 1.39328 1.40646 1.50138 1.52327 1.83683 2.27457 2.42241 2.66223 2.91155 3.17135 3.37074 3.65721 3.74331 3.84851 4.03151 4.06557 4.13032 4.17797 4.35706 4.38979 4.44853 4.52290 4.57948 4.61048 4.75441 4.80798 4.86487 4.95754 5.11223 5.24359 5.28743 5.36861 5.54739 5.64018 5.86418 5.90154 5.98175 6.32631 6.63242 6.84272 7.26365 7.41834 8.91875 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.020881 B = 0.004114 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.583511 B = 6804.182425 C = 6949.704389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.306 3.694 3 C -0.867 4.867 4 C 0.589 3.411 5 O -0.595 6.595 6 N -0.597 5.597 7 C 0.107 3.893 8 C -0.126 4.126 9 C -0.106 4.106 10 C 0.043 3.957 11 H -0.003 1.003 12 C -0.534 4.534 13 H 0.063 0.937 14 C 0.009 3.991 15 N -0.916 5.916 16 Si 0.958 3.042 17 H -0.260 1.260 18 H -0.286 1.286 19 H -0.280 1.280 20 C 0.120 3.880 21 S 2.472 3.528 22 O -0.972 6.972 23 O -0.958 6.958 24 C -0.596 4.596 25 C 0.055 3.945 26 O -0.285 6.285 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.128 0.872 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.259 0.741 37 H 0.027 0.973 38 H 0.077 0.923 39 H 0.206 0.794 40 H 0.189 0.811 41 H 0.103 0.897 42 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.580 -21.800 5.035 26.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.252 3.748 3 C -0.956 4.956 4 C 0.378 3.622 5 O -0.477 6.477 6 N -0.328 5.328 7 C -0.015 4.015 8 C -0.163 4.163 9 C -0.144 4.144 10 C 0.024 3.976 11 H 0.016 0.984 12 C -0.573 4.573 13 H 0.081 0.919 14 C -0.190 4.190 15 N -0.555 5.555 16 Si 0.783 3.217 17 H -0.183 1.183 18 H -0.213 1.213 19 H -0.206 1.206 20 C -0.002 4.002 21 S 2.654 3.346 22 O -0.969 6.969 23 O -0.956 6.956 24 C -0.730 4.730 25 C -0.019 4.019 26 O -0.194 6.194 27 H 0.115 0.885 28 H 0.091 0.909 29 H 0.146 0.854 30 H 0.116 0.884 31 H 0.086 0.914 32 H 0.125 0.875 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.046 0.954 38 H 0.096 0.904 39 H 0.223 0.777 40 H 0.207 0.793 41 H 0.121 0.879 42 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 14.772 -20.886 4.223 25.928 hybrid contribution -1.228 1.369 -0.477 1.900 sum 13.543 -19.517 3.746 24.049 Atomic orbital electron populations 1.21472 0.87521 1.06206 1.05080 1.20502 0.95028 0.82482 0.76767 1.30174 1.27824 0.99089 1.38497 1.16033 0.79235 0.83564 0.83349 1.90793 1.58703 1.64375 1.33803 1.48484 1.46761 1.31271 1.06266 1.21810 0.96956 0.99336 0.83371 1.21894 0.95964 0.97770 1.00710 1.21531 0.98853 0.96941 0.97082 1.18881 0.91417 0.95124 0.92194 0.98450 1.21556 1.29832 1.12607 0.93260 0.91903 1.25894 0.97715 1.00350 0.95022 1.70087 1.45146 1.41642 0.98626 0.85508 0.78359 0.79215 0.78602 1.18337 1.21274 1.20553 1.21815 0.89799 0.84913 1.03668 1.06253 0.73344 0.80747 0.74278 1.93558 1.82503 1.83702 1.37180 1.93558 1.82326 1.63587 1.56083 1.30830 1.13451 1.14299 1.14443 1.24208 0.73884 1.05597 0.98162 1.85641 1.31509 1.25704 1.76568 0.88522 0.90895 0.85377 0.88443 0.91380 0.87530 0.91807 0.93055 0.92189 0.93178 0.95449 0.90446 0.77677 0.79329 0.87870 0.78187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.43 71.24 0.67 -3.12 16 2 C 0.31 7.25 6.53 24.61 0.16 7.42 16 3 C -0.87 -28.13 3.36 22.07 0.07 -28.05 16 4 C 0.59 27.14 4.90 85.12 0.42 27.56 16 5 O -0.59 -34.32 16.52 -4.46 -0.07 -34.39 16 6 N -0.60 -26.85 2.59 -830.14 -2.15 -29.00 16 7 C 0.11 3.61 5.91 86.22 0.51 4.12 16 8 C -0.13 -3.81 6.06 30.53 0.19 -3.62 16 9 C -0.11 -4.21 5.11 30.62 0.16 -4.05 16 10 C 0.04 2.22 2.25 -11.46 -0.03 2.19 16 11 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 12 C -0.53 -30.08 8.56 25.60 0.22 -29.86 16 13 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 14 C 0.01 0.54 5.30 84.65 0.45 0.99 16 15 N -0.92 -57.13 11.39 21.45 0.24 -56.88 16 16 Si 0.96 45.48 29.54 68.60 2.03 47.50 16 17 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 18 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 20 C 0.12 6.51 5.39 86.36 0.47 6.98 16 21 S 2.47 64.50 5.46 -56.49 -0.31 64.19 16 22 O -0.97 -34.00 17.97 -127.69 -2.29 -36.29 16 23 O -0.96 -31.02 17.27 -127.69 -2.21 -33.23 16 24 C -0.60 -3.53 6.85 72.27 0.49 -3.04 16 25 C 0.05 0.27 7.02 72.27 0.51 0.77 16 26 O -0.29 -3.67 9.95 -64.98 -0.65 -4.31 16 27 H 0.10 2.70 8.14 -2.38 -0.02 2.68 16 28 H 0.07 2.48 6.22 -2.39 -0.01 2.46 16 29 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.10 2.57 6.03 -2.39 -0.01 2.56 16 31 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.06 1.88 7.79 -2.39 -0.02 1.87 16 34 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 35 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 36 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 37 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.08 4.94 5.15 -2.39 -0.01 4.92 16 39 H 0.21 -0.45 8.14 -2.39 -0.02 -0.47 16 40 H 0.19 0.10 8.14 -2.39 -0.02 0.08 16 41 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.20 -1.08 8.14 -2.39 -0.02 -1.10 16 Total: -1.00 -96.11 347.62 -0.09 -96.20 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 1.03 Total: 7.93 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: 4.28 Total: -21.72 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -1.90 Total: -85.88 kcal Atomic # 8 Polarization: -103.00 SS G_CDS: -5.22 Total: -108.22 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Atomic # 16 Polarization: 64.50 SS G_CDS: -0.31 Total: 64.19 kcal Total: -96.11 -0.09 -96.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855255083.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.372 kcal (2) G-P(sol) polarization free energy of solvation -96.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds