Wall clock time and date at job start Tue Mar 31 2020 04:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47809 * 2 1 4 4 O 1.45196 * 109.47112 * 120.00569 * 2 1 3 5 5 C 1.34735 * 117.00207 * 269.99489 * 4 2 1 6 6 O 1.21500 * 119.99518 * 0.02562 * 5 4 2 7 7 C 1.47529 * 120.00455 * 180.02562 * 5 4 2 8 8 N 1.31872 * 126.46429 * 359.68751 * 7 5 4 9 9 N 1.28475 * 110.12689 * 180.26582 * 8 7 5 10 10 C 1.46493 * 124.93343 * 179.97438 * 9 8 7 11 11 C 1.35651 * 110.14166 * 359.97438 * 9 8 7 12 12 C 1.35446 * 107.14438 * 0.02562 * 11 9 8 13 13 Cl 1.73601 * 127.24023 * 179.97438 * 12 11 9 14 14 C 1.50704 * 109.46759 * 240.00358 * 2 1 3 15 15 O 1.21291 * 119.99822 * 256.02824 * 14 2 1 16 16 N 1.34775 * 120.00025 * 76.03128 * 14 2 1 17 17 C 1.46495 * 120.00140 * 5.36509 * 16 14 2 18 18 C 1.46501 * 119.99791 * 185.36275 * 16 14 2 19 19 C 1.50704 * 109.46997 * 90.00025 * 18 16 14 20 20 H 1.07996 * 120.00082 * 359.97438 * 19 18 16 21 21 C 1.37884 * 119.99804 * 180.02562 * 19 18 16 22 22 N 1.31512 * 119.99579 * 180.02562 * 21 19 18 23 23 Si 1.86792 * 119.99955 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47051 * 90.00523 * 23 21 19 25 25 H 1.48500 * 109.47127 * 210.00088 * 23 21 19 26 26 H 1.48497 * 109.47821 * 330.00340 * 23 21 19 27 27 H 1.08999 * 109.46306 * 306.13569 * 1 2 3 28 28 H 1.08997 * 109.46948 * 66.13121 * 1 2 3 29 29 H 1.08995 * 109.47623 * 186.13300 * 1 2 3 30 30 H 1.09002 * 109.47397 * 270.02182 * 10 9 8 31 31 H 1.09006 * 109.47296 * 30.01870 * 10 9 8 32 32 H 1.08998 * 109.47414 * 150.01821 * 10 9 8 33 33 H 1.07998 * 126.43295 * 180.02562 * 11 9 8 34 34 H 1.08995 * 109.47264 * 84.82486 * 17 16 14 35 35 H 1.09006 * 109.46873 * 204.82629 * 17 16 14 36 36 H 1.09008 * 109.47138 * 324.81883 * 17 16 14 37 37 H 1.09002 * 109.47519 * 209.99674 * 18 16 14 38 38 H 1.09002 * 109.47176 * 330.00209 * 18 16 14 39 39 H 0.97003 * 119.99926 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 8 2.0140 -0.6846 1.1854 5 6 2.2180 0.0666 2.2852 6 8 1.9970 1.2610 2.2546 7 6 2.7096 -0.5610 3.5265 8 7 2.9840 -1.8387 3.7033 9 7 3.3851 -2.0423 4.9068 10 6 3.7752 -3.3449 5.4519 11 6 3.3949 -0.8760 5.5995 12 6 2.9704 0.0938 4.7546 13 17 2.7846 1.7841 5.1040 14 6 2.0323 -0.7104 -1.2306 15 8 2.4735 -1.8368 -1.1429 16 7 1.9912 -0.0940 -2.4284 17 6 1.5691 1.3060 -2.5177 18 6 2.3687 -0.8241 -3.6411 19 6 1.1504 -1.4915 -4.2254 20 1 0.1910 -1.3831 -3.7416 21 6 1.2609 -2.2415 -5.3772 22 7 0.1976 -2.8235 -5.8873 23 14 2.9204 -2.4296 -6.2136 24 1 3.6179 -3.6213 -5.6672 25 1 2.7216 -2.5995 -7.6754 26 1 3.7412 -1.2176 -5.9634 27 1 -0.3632 0.6060 0.8300 28 1 -0.3633 0.4158 -0.9398 29 1 -0.3634 -1.0217 0.1098 30 1 2.9017 -3.8352 5.8818 31 1 4.1839 -3.9650 4.6541 32 1 4.5301 -3.2038 6.2254 33 1 3.6865 -0.7452 6.6311 34 1 2.4231 1.9558 -2.3267 35 1 1.1775 1.5044 -3.5155 36 1 0.7925 1.4993 -1.7776 37 1 2.7860 -0.1283 -4.3691 38 1 3.1135 -1.5803 -3.3930 39 1 0.2753 -3.3514 -6.6973 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860015276.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:46 Heat of formation + Delta-G solvation = -24.405644 kcal Electronic energy + Delta-G solvation = -25626.583146 eV Core-core repulsion = 21598.572690 eV Total energy + Delta-G solvation = -4028.010456 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.097 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -43.11330 -40.45534 -38.90178 -36.87342 -36.30582 -34.94895 -33.90146 -32.72299 -31.66556 -31.06059 -28.43243 -28.11622 -26.13586 -24.82822 -23.64675 -22.02651 -21.97487 -20.52670 -18.81652 -18.31773 -17.42312 -16.95722 -16.91233 -16.61610 -15.94019 -15.80310 -15.19733 -14.97679 -14.66552 -14.25189 -14.06236 -13.73739 -13.37762 -13.29237 -13.10223 -12.81345 -12.37323 -12.22941 -12.18408 -12.17575 -11.90095 -11.85031 -11.46754 -11.38911 -11.05927 -10.92378 -10.66898 -10.59049 -10.48668 -10.14779 -9.78937 -9.54377 -9.21703 -8.97169 -8.58816 -7.74706 -6.08880 -4.08084 1.04452 1.41231 1.50383 2.13632 2.55927 2.90492 3.21120 3.30427 3.36371 3.38586 3.78051 3.97987 4.19819 4.40114 4.53306 4.59542 4.79120 4.81643 4.89688 4.95427 5.06513 5.14170 5.24850 5.45556 5.54322 5.75196 5.79677 5.83632 6.09883 6.12493 6.28267 6.37123 6.67745 6.93548 7.26005 7.29976 7.59424 7.74431 8.14956 8.45662 8.85941 8.94924 9.51028 11.04340 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.019491 B = 0.002814 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.240234 B = 9948.028461 C =10788.459286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.073 3.927 3 H 0.106 0.894 4 O -0.310 6.310 5 C 0.550 3.450 6 O -0.487 6.487 7 C 0.012 3.988 8 N -0.208 5.208 9 N -0.276 5.276 10 C 0.085 3.915 11 C -0.002 4.002 12 C -0.100 4.100 13 Cl -0.005 7.005 14 C 0.513 3.487 15 O -0.517 6.517 16 N -0.593 5.593 17 C 0.073 3.927 18 C 0.216 3.784 19 C -0.532 4.532 20 H 0.076 0.924 21 C 0.073 3.927 22 N -0.896 5.896 23 Si 0.876 3.124 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.265 1.265 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.196 0.804 34 H 0.049 0.951 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.034 0.966 38 H 0.039 0.961 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.485 6.248 26.058 27.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.014 3.986 3 H 0.123 0.877 4 O -0.224 6.224 5 C 0.392 3.608 6 O -0.372 6.372 7 C -0.147 4.147 8 N -0.045 5.045 9 N -0.066 5.066 10 C -0.054 4.054 11 C -0.145 4.145 12 C -0.137 4.137 13 Cl 0.024 6.976 14 C 0.298 3.702 15 O -0.392 6.392 16 N -0.326 5.326 17 C -0.071 4.071 18 C 0.096 3.904 19 C -0.570 4.570 20 H 0.094 0.906 21 C -0.129 4.129 22 N -0.535 5.535 23 Si 0.703 3.297 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.190 1.190 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.110 0.890 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.213 0.787 34 H 0.067 0.933 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.057 0.943 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.614 4.886 25.395 26.693 hybrid contribution 0.635 0.794 -0.091 1.021 sum 7.249 5.680 25.304 26.928 Atomic orbital electron populations 1.22177 0.91734 1.04416 1.03953 1.22692 0.96315 0.97293 0.82279 0.87675 1.86758 1.76204 1.40390 1.19046 1.19437 0.74502 0.84432 0.82476 1.90879 1.47872 1.14734 1.83716 1.20615 1.10680 0.89915 0.93441 1.73970 1.12792 1.17367 1.00408 1.45576 1.45144 1.08967 1.06867 1.22350 1.02518 0.79645 1.00894 1.22666 1.07297 0.84453 1.00092 1.20776 1.10548 0.88798 0.93542 1.98375 1.96205 1.08674 1.94388 1.19757 0.79966 0.86758 0.83747 1.90703 1.44920 1.18281 1.85326 1.47728 1.65800 1.12039 1.07054 1.21867 0.99173 0.82112 1.03906 1.19734 0.97275 0.92400 0.81003 1.21335 0.95083 1.31077 1.09509 0.90608 1.24848 0.96573 0.94777 0.96750 1.69895 1.28817 1.33049 1.21720 0.86848 0.84623 0.79435 0.78788 1.19850 1.21052 1.19009 0.91057 0.89275 0.90474 0.88954 0.87670 0.88053 0.78690 0.93269 0.89905 0.91847 0.94846 0.94296 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 9.19 37.16 0.34 -2.19 16 2 C 0.07 1.28 2.14 -27.88 -0.06 1.22 16 3 H 0.11 1.65 6.32 -51.93 -0.33 1.32 16 4 O -0.31 -5.75 9.48 -47.11 -0.45 -6.19 16 5 C 0.55 9.09 7.94 34.52 0.27 9.37 16 6 O -0.49 -8.13 15.13 -19.27 -0.29 -8.42 16 7 C 0.01 0.17 7.16 -82.78 -0.59 -0.42 16 8 N -0.21 -2.82 11.99 33.41 0.40 -2.42 16 9 N -0.28 -2.43 3.72 -67.95 -0.25 -2.68 16 10 C 0.09 0.30 11.32 59.84 0.68 0.98 16 11 C 0.00 -0.02 11.49 -16.86 -0.19 -0.21 16 12 C -0.10 -1.14 6.80 -39.30 -0.27 -1.41 16 13 Cl -0.01 -0.06 28.17 -51.86 -1.46 -1.52 16 14 C 0.51 11.24 6.95 -10.98 -0.08 11.16 16 15 O -0.52 -13.59 16.13 -13.55 -0.22 -13.80 16 16 N -0.59 -12.58 2.86 -182.95 -0.52 -13.11 16 17 C 0.07 1.15 9.79 59.84 0.59 1.73 16 18 C 0.22 5.36 4.25 -5.19 -0.02 5.33 16 19 C -0.53 -15.29 9.94 -34.44 -0.34 -15.64 16 20 H 0.08 2.37 8.06 -52.49 -0.42 1.94 16 21 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 22 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 23 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 24 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.09 1.30 6.33 -51.93 -0.33 0.97 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 0.03 8.13 -51.93 -0.42 -0.39 16 33 H 0.20 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.08 1.30 8.03 -51.93 -0.42 0.88 16 36 H 0.06 0.85 4.92 -51.92 -0.26 0.60 16 37 H 0.03 0.78 7.13 -51.93 -0.37 0.41 16 38 H 0.04 1.03 6.78 -51.93 -0.35 0.68 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 354.87 15.07 5.35 5.35 Total: -1.00 -38.43 354.87 -5.71 -44.14 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -4.60 Total: -3.44 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: 0.23 Total: 11.97 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.40 Total: -45.09 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.96 Total: -28.41 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.46 Total: -1.52 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -38.43 -5.71 -44.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860015276.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.735 kcal (2) G-P(sol) polarization free energy of solvation -38.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds