Wall clock time and date at job start Tue Mar 31 2020 04:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 O 1.45194 * 109.46979 * 239.99809 * 2 1 3 5 5 C 1.34740 * 117.00047 * 90.00569 * 4 2 1 6 6 O 1.21493 * 119.99669 * 359.97438 * 5 4 2 7 7 C 1.47531 * 119.99971 * 179.97438 * 5 4 2 8 8 N 1.31870 * 126.46842 * 359.68129 * 7 5 4 9 9 N 1.28475 * 110.12766 * 179.85611 * 8 7 5 10 10 C 1.46501 * 124.93187 * 180.16573 * 9 8 7 11 11 C 1.35655 * 110.13742 * 0.42241 * 9 8 7 12 12 C 1.35441 * 107.14616 * 359.74651 * 11 9 8 13 13 Cl 1.73599 * 127.24004 * 179.97438 * 12 11 9 14 14 C 1.50699 * 109.46866 * 119.99935 * 2 1 3 15 15 O 1.21276 * 120.00180 * 114.99950 * 14 2 1 16 16 N 1.34778 * 119.99817 * 295.00053 * 14 2 1 17 17 C 1.46502 * 120.00356 * 359.97438 * 16 14 2 18 18 C 1.46510 * 119.99810 * 179.97438 * 16 14 2 19 19 C 1.50700 * 109.47088 * 89.99667 * 18 16 14 20 20 H 1.08002 * 120.00014 * 0.02562 * 19 18 16 21 21 C 1.37870 * 120.00259 * 179.97438 * 19 18 16 22 22 N 1.31511 * 120.00382 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99861 * 0.02562 * 21 19 18 24 24 H 1.48509 * 109.47083 * 90.00193 * 23 21 19 25 25 H 1.48493 * 109.47486 * 210.00092 * 23 21 19 26 26 H 1.48500 * 109.47098 * 330.00452 * 23 21 19 27 27 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 28 28 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 30 30 H 1.08992 * 109.47083 * 270.29600 * 10 9 8 31 31 H 1.09003 * 109.46780 * 30.29288 * 10 9 8 32 32 H 1.08997 * 109.46956 * 150.28996 * 10 9 8 33 33 H 1.08000 * 126.42268 * 179.74853 * 11 9 8 34 34 H 1.08999 * 109.46601 * 90.00278 * 17 16 14 35 35 H 1.09000 * 109.46861 * 210.00048 * 17 16 14 36 36 H 1.09002 * 109.46766 * 330.00032 * 17 16 14 37 37 H 1.08994 * 109.47027 * 209.99740 * 18 16 14 38 38 H 1.09002 * 109.47025 * 330.00346 * 18 16 14 39 39 H 0.97002 * 120.00242 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 -1.1855 5 6 2.2180 0.0668 -2.2852 6 8 1.9971 1.2611 -2.2545 7 6 2.7096 -0.5608 -3.5266 8 7 2.9950 -1.8365 -3.7001 9 7 3.3947 -2.0403 -4.9040 10 6 3.7923 -3.3417 -5.4469 11 6 3.4006 -0.8747 -5.5978 12 6 2.9700 0.0940 -4.7547 13 17 2.7785 1.7833 -5.1057 14 6 2.0323 -0.7104 1.2305 15 8 2.6529 -1.7466 1.1216 16 7 1.7918 -0.1941 2.4520 17 6 1.0426 1.0580 2.5836 18 6 2.2796 -0.8851 3.6483 19 6 3.6613 -0.3879 3.9872 20 1 4.1291 0.3675 3.3733 21 6 4.3278 -0.8966 5.0817 22 7 5.5333 -0.4623 5.3778 23 14 3.5185 -2.2026 6.1441 24 1 3.8621 -3.5493 5.6208 25 1 4.0050 -2.0756 7.5413 26 1 2.0448 -2.0213 6.1146 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 4.8594 -3.4924 -5.2844 31 1 3.2332 -4.1311 -4.9445 32 1 3.5799 -3.3697 -6.5156 33 1 3.6935 -0.7437 -6.6290 34 1 -0.0215 0.8374 2.6678 35 1 1.3754 1.5884 3.4758 36 1 1.2166 1.6795 1.7052 37 1 1.6070 -0.6859 4.4825 38 1 2.3159 -1.9579 3.4588 39 1 6.0021 -0.8200 6.1480 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860015277.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:50 Heat of formation + Delta-G solvation = -22.522480 kcal Electronic energy + Delta-G solvation = -25659.715747 eV Core-core repulsion = 21631.786951 eV Total energy + Delta-G solvation = -4027.928796 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.097 amu Computer time = 4.23 seconds Orbital eigenvalues (eV) -43.07513 -40.44173 -38.90762 -36.83163 -36.27638 -34.98064 -33.86888 -32.77768 -31.65438 -31.02930 -28.39118 -28.04714 -26.24155 -24.80575 -23.63966 -21.99220 -21.96084 -20.51320 -18.85690 -18.30041 -17.40610 -16.93434 -16.87593 -16.59741 -15.93544 -15.76917 -15.22348 -14.95093 -14.73011 -14.16852 -13.96680 -13.58812 -13.46537 -13.35425 -13.22513 -12.86114 -12.41446 -12.25579 -12.18388 -12.13944 -11.86620 -11.80581 -11.49644 -11.35455 -11.01978 -10.93204 -10.64295 -10.55722 -10.50531 -10.13699 -9.75025 -9.53042 -9.17620 -8.96258 -8.57721 -7.75270 -6.07137 -4.06436 1.08302 1.44946 1.54518 2.16739 2.58490 2.94639 3.24277 3.30659 3.36484 3.38330 3.77721 4.00234 4.23167 4.40775 4.54669 4.62612 4.79039 4.83200 4.91932 4.95958 5.02912 5.11008 5.26018 5.43144 5.57324 5.66897 5.68138 5.82561 6.00825 6.15480 6.21192 6.37049 6.67318 6.92396 7.27039 7.32051 7.60672 7.77558 8.15117 8.47166 8.87409 8.97156 9.52298 11.06225 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.016759 B = 0.002917 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.381785 B = 9596.855441 C =10248.145053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.071 3.929 3 H 0.110 0.890 4 O -0.309 6.309 5 C 0.551 3.449 6 O -0.486 6.486 7 C 0.013 3.987 8 N -0.208 5.208 9 N -0.276 5.276 10 C 0.086 3.914 11 C -0.002 4.002 12 C -0.099 4.099 13 Cl -0.005 7.005 14 C 0.512 3.488 15 O -0.515 6.515 16 N -0.592 5.592 17 C 0.076 3.924 18 C 0.217 3.783 19 C -0.531 4.531 20 H 0.075 0.925 21 C 0.073 3.927 22 N -0.897 5.897 23 Si 0.877 3.123 24 H -0.273 1.273 25 H -0.285 1.285 26 H -0.265 1.265 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.196 0.804 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.034 0.966 38 H 0.038 0.962 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.090 -0.630 -24.580 26.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.013 3.987 3 H 0.127 0.873 4 O -0.223 6.223 5 C 0.392 3.608 6 O -0.371 6.371 7 C -0.146 4.146 8 N -0.046 5.046 9 N -0.066 5.066 10 C -0.054 4.054 11 C -0.145 4.145 12 C -0.136 4.136 13 Cl 0.024 6.976 14 C 0.296 3.704 15 O -0.390 6.390 16 N -0.326 5.326 17 C -0.068 4.068 18 C 0.097 3.903 19 C -0.570 4.570 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.535 5.535 23 Si 0.704 3.296 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.190 1.190 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.213 0.787 34 H 0.070 0.930 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.647 -1.852 -23.951 25.531 hybrid contribution -0.164 0.416 0.167 0.478 sum -8.811 -1.435 -23.784 25.404 Atomic orbital electron populations 1.22292 0.92200 1.04062 1.04183 1.22647 0.95784 0.97766 0.82551 0.87253 1.86735 1.76312 1.40333 1.18960 1.19419 0.74500 0.84427 0.82415 1.90881 1.47837 1.14687 1.83693 1.20601 1.10555 0.90028 0.93386 1.73953 1.12771 1.17507 1.00345 1.45571 1.45140 1.09033 1.06841 1.22342 1.02988 0.79886 1.00148 1.22660 1.07176 0.84487 1.00185 1.20774 1.10417 0.88828 0.93603 1.98376 1.96134 1.08757 1.94346 1.19753 0.80962 0.85922 0.83763 1.90713 1.39204 1.23426 1.85691 1.47724 1.54456 1.24103 1.06284 1.21878 0.95137 0.86475 1.03304 1.19713 0.95511 0.93690 0.81350 1.21336 0.99170 1.24228 1.12254 0.90689 1.24855 0.94668 0.96284 0.97184 1.69898 1.12308 1.43304 1.27979 0.86841 0.80137 0.82820 0.79834 1.19861 1.21054 1.19003 0.91061 0.90962 0.89213 0.88916 0.87762 0.88068 0.78688 0.93018 0.90093 0.91936 0.94828 0.94372 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 9.28 37.16 0.34 -1.92 16 2 C 0.07 1.24 2.17 -27.88 -0.06 1.18 16 3 H 0.11 1.83 6.15 -51.93 -0.32 1.51 16 4 O -0.31 -5.81 9.43 -47.27 -0.45 -6.26 16 5 C 0.55 9.43 7.94 34.52 0.27 9.71 16 6 O -0.49 -8.46 15.13 -19.26 -0.29 -8.75 16 7 C 0.01 0.19 7.16 -82.78 -0.59 -0.40 16 8 N -0.21 -2.91 11.98 33.41 0.40 -2.51 16 9 N -0.28 -2.55 3.72 -67.95 -0.25 -2.80 16 10 C 0.09 0.33 11.32 59.85 0.68 1.01 16 11 C 0.00 -0.02 11.49 -16.86 -0.19 -0.21 16 12 C -0.10 -1.19 6.80 -39.30 -0.27 -1.46 16 13 Cl 0.00 -0.06 28.17 -51.86 -1.46 -1.52 16 14 C 0.51 11.19 7.10 -10.99 -0.08 11.12 16 15 O -0.52 -13.63 16.09 -14.05 -0.23 -13.86 16 16 N -0.59 -12.51 2.86 -182.95 -0.52 -13.03 16 17 C 0.08 1.17 8.92 59.85 0.53 1.70 16 18 C 0.22 5.39 4.23 -5.19 -0.02 5.37 16 19 C -0.53 -15.55 9.94 -34.44 -0.34 -15.89 16 20 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 21 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 22 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 23 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 24 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.09 1.02 5.12 -51.93 -0.27 0.75 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 0.04 8.13 -51.93 -0.42 -0.38 16 33 H 0.20 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.05 0.64 7.02 -51.93 -0.36 0.27 16 35 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 36 H 0.06 0.84 6.08 -51.93 -0.32 0.52 16 37 H 0.03 0.78 7.13 -51.93 -0.37 0.41 16 38 H 0.04 1.01 6.85 -51.93 -0.36 0.65 16 39 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 352.92 15.07 5.32 5.32 Total: -1.00 -39.23 352.92 -5.74 -44.97 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: -4.54 Total: -3.63 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: 0.18 Total: 12.25 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.40 Total: -45.58 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.96 Total: -28.86 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Atomic # 17 Polarization: -0.06 SS G_CDS: -1.46 Total: -1.52 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -39.23 -5.74 -44.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860015277.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.445 kcal (2) G-P(sol) polarization free energy of solvation -39.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.23 seconds