Wall clock time and date at job start Tue Mar 31 2020 05:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 114.00361 * 2 1 4 4 C 1.52995 * 109.47577 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47546 * 184.99704 * 4 3 2 6 6 C 1.53001 * 109.47422 * 305.00272 * 4 3 2 7 7 O 1.42895 * 109.47181 * 54.99259 * 6 4 3 8 8 N 1.46509 * 109.46889 * 64.99857 * 4 3 2 9 9 S 1.65604 * 119.99844 * 145.00371 * 8 4 3 10 10 O 1.42095 * 106.40018 * 311.45546 * 9 8 4 11 11 O 1.42098 * 106.39919 * 178.53897 * 9 8 4 12 12 C 1.76201 * 107.21824 * 64.99985 * 9 8 4 13 13 C 1.38234 * 120.00103 * 90.00267 * 12 9 8 14 14 C 1.38238 * 119.99675 * 180.27958 * 13 12 9 15 15 C 1.38229 * 120.00124 * 359.45911 * 14 13 12 16 16 C 1.50699 * 120.00230 * 180.28369 * 15 14 13 17 17 C 1.50691 * 109.47261 * 270.27992 * 16 15 14 18 18 H 1.08000 * 120.00158 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00152 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00173 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99964 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47356 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47320 * 119.99435 * 21 19 17 24 24 H 1.48500 * 109.47351 * 239.99262 * 21 19 17 25 25 C 1.38234 * 119.99957 * 0.56005 * 15 14 13 26 26 C 1.38234 * 119.99657 * 270.01898 * 12 9 8 27 27 H 1.08993 * 109.47144 * 59.99689 * 1 2 3 28 28 H 1.08997 * 109.47157 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46951 * 300.00345 * 1 2 3 30 30 H 1.08998 * 109.47248 * 59.99835 * 3 2 1 31 31 H 1.09005 * 109.46916 * 300.00139 * 3 2 1 32 32 H 1.08994 * 109.47389 * 174.99780 * 6 4 3 33 33 H 1.09003 * 109.46680 * 294.99648 * 6 4 3 34 34 H 0.96699 * 114.00560 * 180.02562 * 7 6 4 35 35 H 0.96997 * 119.99899 * 324.99944 * 8 4 3 36 36 H 1.08002 * 119.99744 * 359.97438 * 13 12 9 37 37 H 1.08004 * 119.99577 * 179.72816 * 14 13 12 38 38 H 1.09007 * 109.47085 * 30.27493 * 16 15 14 39 39 H 1.08998 * 109.47270 * 150.26989 * 16 15 14 40 40 H 0.97003 * 120.00412 * 180.02562 * 20 19 17 41 41 H 1.08001 * 120.00274 * 179.72697 * 25 15 14 42 42 H 1.07997 * 120.00460 * 359.97438 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.9785 2.1765 0.0902 6 6 3.9781 0.3197 1.1826 7 8 3.3067 -0.9405 1.1284 8 7 3.9766 0.5639 -1.2509 9 16 5.4021 1.0337 -1.9507 10 8 5.3850 2.4543 -1.9812 11 8 5.5610 0.2332 -3.1139 12 6 6.6995 0.5752 -0.8501 13 6 7.2927 -0.6685 -0.9610 14 6 8.3066 -1.0304 -0.0938 15 6 8.7348 -0.1444 0.8771 16 6 9.8444 -0.5365 1.8183 17 6 9.2583 -1.2043 3.0354 18 1 8.1891 -1.3318 3.1192 19 6 10.0868 -1.6518 4.0425 20 7 11.3887 -1.4963 3.9408 21 14 9.3601 -2.4790 5.5515 22 1 7.8815 -2.5310 5.4238 23 1 9.8962 -3.8592 5.6660 24 1 9.7248 -1.7042 6.7647 25 6 8.1413 1.0991 0.9882 26 6 7.1238 1.4590 0.1244 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6887 1.8464 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 5.0552 0.1601 1.1327 33 1 3.7285 0.8246 2.1158 34 1 3.5394 -1.5415 1.8494 35 1 3.4338 -0.1223 -1.6697 36 1 6.9607 -1.3592 -1.7220 37 1 8.7671 -2.0037 -0.1776 38 1 10.5207 -1.2276 1.3150 39 1 10.3949 0.3539 2.1220 40 1 11.9717 -1.8114 4.6492 41 1 8.4728 1.7896 1.7495 42 1 6.6604 2.4307 0.2110 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885158260.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:20 Heat of formation + Delta-G solvation = -149.695806 kcal Electronic energy + Delta-G solvation = -26667.493760 eV Core-core repulsion = 22739.634364 eV Total energy + Delta-G solvation = -3927.859396 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -38.91777 -38.66989 -37.13873 -36.62849 -35.76255 -34.68176 -33.71016 -31.59033 -30.60006 -29.81710 -27.48474 -27.00596 -25.39600 -23.74805 -22.37337 -21.39230 -20.91085 -19.52517 -18.10914 -17.44771 -17.06065 -16.70367 -16.48473 -16.26095 -15.63531 -15.43490 -15.09545 -14.71919 -14.39947 -14.33321 -14.10532 -13.86092 -13.27508 -13.11988 -12.88717 -12.75619 -12.61431 -12.23102 -12.02774 -11.93314 -11.79778 -11.62574 -11.57954 -11.51684 -11.30824 -10.96412 -10.91806 -10.53733 -10.51357 -9.95145 -9.83274 -9.71209 -9.64738 -9.51252 -8.61119 -8.57394 -8.38950 -6.20735 -4.26067 0.53015 1.31631 1.77692 3.03933 3.18789 3.27081 3.29961 3.61399 3.77576 4.10612 4.18764 4.33024 4.45904 4.56561 4.90431 5.05641 5.09786 5.14356 5.17479 5.20884 5.22005 5.24152 5.28066 5.40610 5.51174 5.69181 5.71063 5.78758 5.89127 5.91366 6.22839 6.31445 6.49516 6.82107 6.88653 6.97253 7.05075 7.27222 7.41283 7.57076 7.73660 7.76193 8.09365 8.78516 9.38757 10.89381 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.013087 B = 0.003832 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.994146 B = 7304.729065 C = 8824.428243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.060 3.940 4 C 0.156 3.844 5 H 0.115 0.885 6 C 0.055 3.945 7 O -0.542 6.542 8 N -1.103 6.103 9 S 2.696 3.304 10 O -0.968 6.968 11 O -0.966 6.966 12 C -0.703 4.703 13 C -0.017 4.017 14 C -0.145 4.145 15 C 0.027 3.973 16 C 0.038 3.962 17 C -0.516 4.516 18 H 0.059 0.941 19 C 0.060 3.940 20 N -0.890 5.890 21 Si 0.898 3.102 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.145 4.145 26 C -0.028 4.028 27 H 0.035 0.965 28 H 0.083 0.917 29 H 0.036 0.964 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.371 0.629 35 H 0.424 0.576 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.264 0.736 41 H 0.128 0.872 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.355 5.154 -6.624 20.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C -0.019 4.019 4 C 0.048 3.952 5 H 0.133 0.867 6 C -0.025 4.025 7 O -0.345 6.345 8 N -0.862 5.862 9 S 2.788 3.212 10 O -0.958 6.958 11 O -0.956 6.956 12 C -0.792 4.792 13 C -0.037 4.037 14 C -0.164 4.164 15 C 0.026 3.974 16 C 0.001 3.999 17 C -0.554 4.554 18 H 0.077 0.923 19 C -0.142 4.142 20 N -0.528 5.528 21 Si 0.726 3.274 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.164 4.164 26 C -0.048 4.048 27 H 0.053 0.947 28 H 0.102 0.898 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.217 0.783 35 H 0.260 0.740 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.146 0.854 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.159 5.796 -7.809 20.599 hybrid contribution -0.050 -1.063 1.999 2.265 sum -18.209 4.733 -5.809 19.691 Atomic orbital electron populations 1.22723 0.82200 1.02535 0.99325 1.88175 1.18153 1.25680 1.95106 1.22661 0.92309 0.86213 1.00680 1.21052 0.94488 0.96221 0.83433 0.86716 1.22683 0.96844 0.86379 0.96636 1.86653 1.68807 1.26014 1.53041 1.55431 1.39595 1.55268 1.35946 1.01598 0.72700 0.73557 0.73314 1.93552 1.86610 1.29126 1.86526 1.93565 1.85781 1.70588 1.45655 1.30336 1.23641 1.05240 1.20025 1.20766 0.93568 0.93156 0.96207 1.21246 0.98436 1.00436 0.96260 1.21099 0.93802 0.91322 0.91141 1.18546 0.90962 0.97851 0.92506 1.20968 0.93390 1.38831 1.02205 0.92318 1.25013 0.94820 0.95826 0.98539 1.69953 1.02726 1.46369 1.33793 0.86435 0.79308 0.79216 0.82464 1.19671 1.20798 1.20832 1.21226 0.97653 0.97573 0.99977 1.20761 0.95165 0.97004 0.91845 0.94655 0.89798 0.94555 0.92320 0.92647 0.92323 0.93092 0.78306 0.74025 0.85259 0.85393 0.94716 0.94720 0.92647 0.85399 0.85382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.35 -3.71 7.98 -58.58 -0.47 -4.18 16 3 C 0.06 0.54 5.73 37.15 0.21 0.76 16 4 C 0.16 1.59 3.20 -67.93 -0.22 1.38 16 5 H 0.12 1.01 7.50 -51.93 -0.39 0.62 16 6 C 0.05 0.60 6.88 37.16 0.26 0.85 16 7 O -0.54 -6.30 11.17 -58.58 -0.65 -6.95 16 8 N -1.10 -12.54 5.41 -4.89 -0.03 -12.57 16 9 S 2.70 37.54 5.72 -107.50 -0.61 36.92 16 10 O -0.97 -15.04 16.62 -57.17 -0.95 -15.99 16 11 O -0.97 -15.85 17.28 -57.17 -0.99 -16.84 16 12 C -0.70 -10.77 4.95 -39.58 -0.20 -10.96 16 13 C -0.02 -0.28 9.52 -39.58 -0.38 -0.66 16 14 C -0.14 -2.64 9.70 -39.58 -0.38 -3.03 16 15 C 0.03 0.54 5.07 -104.63 -0.53 0.01 16 16 C 0.04 0.91 5.10 -29.04 -0.15 0.77 16 17 C -0.52 -13.49 9.09 -34.44 -0.31 -13.80 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -25.11 13.29 55.43 0.74 -24.38 16 21 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 C -0.15 -2.57 9.70 -39.58 -0.38 -2.95 16 26 C -0.03 -0.43 8.70 -39.58 -0.34 -0.78 16 27 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.04 0.24 8.14 -51.92 -0.42 -0.18 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.73 6.17 -51.93 -0.32 0.41 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.37 3.37 9.12 45.56 0.42 3.79 16 35 H 0.42 4.59 8.58 -34.48 -0.30 4.29 16 36 H 0.13 1.87 7.62 -52.49 -0.40 1.47 16 37 H 0.13 2.24 8.06 -52.48 -0.42 1.82 16 38 H 0.03 0.88 8.09 -51.93 -0.42 0.46 16 39 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 40 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.13 2.14 8.06 -52.49 -0.42 1.72 16 42 H 0.13 1.64 7.62 -52.49 -0.40 1.24 16 LS Contribution 366.23 15.07 5.52 5.52 Total: -1.00 -33.25 366.23 -9.03 -42.27 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -5.15 Total: 6.35 kcal Atomic # 6 Polarization: -24.16 SS G_CDS: -1.41 Total: -25.57 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.71 Total: -36.95 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -3.06 Total: -43.96 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 37.54 SS G_CDS: -0.61 Total: 36.92 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.25 -9.03 -42.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885158260.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.421 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds