Wall clock time and date at job start Tue Mar 31 2020 05:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42907 * 113.99763 * 2 1 4 4 C 1.52998 * 109.46836 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46835 * 174.99807 * 4 3 2 6 6 C 1.52997 * 109.47316 * 55.00496 * 4 3 2 7 7 O 1.42904 * 109.46741 * 304.99731 * 6 4 3 8 8 N 1.46500 * 109.47638 * 294.99775 * 4 3 2 9 9 S 1.65591 * 120.00361 * 215.00112 * 8 4 3 10 10 O 1.42101 * 106.40500 * 311.46049 * 9 8 4 11 11 O 1.42104 * 106.40278 * 178.54374 * 9 8 4 12 12 C 1.76195 * 107.22084 * 65.00206 * 9 8 4 13 13 C 1.38233 * 120.00186 * 89.99343 * 12 9 8 14 14 C 1.38234 * 120.00037 * 179.72636 * 13 12 9 15 15 C 1.38235 * 120.00220 * 0.28719 * 14 13 12 16 16 C 1.50700 * 120.00255 * 179.97438 * 15 14 13 17 17 C 1.50698 * 109.47288 * 89.99435 * 16 15 14 18 18 H 1.07997 * 119.99957 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99538 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99461 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 120.00335 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47082 * 89.99750 * 21 19 17 23 23 H 1.48506 * 109.47167 * 209.99713 * 21 19 17 24 24 H 1.48498 * 109.47139 * 329.99909 * 21 19 17 25 25 C 1.38237 * 119.99712 * 359.94731 * 15 14 13 26 26 C 1.38234 * 120.00033 * 0.02562 * 25 15 14 27 27 H 1.09001 * 109.46776 * 60.00103 * 1 2 3 28 28 H 1.09003 * 109.46874 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47118 * 300.00099 * 1 2 3 30 30 H 1.09003 * 109.46902 * 59.99910 * 3 2 1 31 31 H 1.08997 * 109.47085 * 299.99971 * 3 2 1 32 32 H 1.09006 * 109.47318 * 64.99239 * 6 4 3 33 33 H 1.08999 * 109.47508 * 185.00162 * 6 4 3 34 34 H 0.96703 * 114.00182 * 180.02562 * 7 6 4 35 35 H 0.96998 * 119.99441 * 35.00803 * 8 4 3 36 36 H 1.08002 * 120.00157 * 0.02562 * 13 12 9 37 37 H 1.07999 * 120.00009 * 180.25939 * 14 13 12 38 38 H 1.09005 * 109.47111 * 209.99797 * 16 15 14 39 39 H 1.09002 * 109.46493 * 329.99148 * 16 15 14 40 40 H 0.97003 * 120.00220 * 180.02562 * 20 19 17 41 41 H 1.08001 * 119.99643 * 180.02562 * 25 15 14 42 42 H 1.08003 * 119.99512 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.9785 2.1766 -0.0890 6 6 3.9790 0.3196 -1.1807 7 8 3.3076 -0.9408 -1.1266 8 7 3.9757 0.5645 1.2527 9 16 5.4005 1.0347 1.9534 10 8 6.3786 1.0203 0.9226 11 8 5.5249 0.2834 3.1531 12 6 5.2130 2.7183 2.4379 13 6 4.7304 3.0258 3.6962 14 6 4.5886 4.3467 4.0783 15 6 4.9238 5.3602 3.2000 16 6 4.7687 6.8002 3.6163 17 6 6.0453 7.2776 4.2592 18 1 6.8852 6.6056 4.3561 19 6 6.1414 8.5726 4.7225 20 7 7.2557 8.9894 5.2831 21 14 4.6889 9.7351 4.5541 22 1 3.8290 9.6308 5.7603 23 1 5.1835 11.1287 4.4178 24 1 3.8996 9.3700 3.3505 25 6 5.4018 5.0526 1.9398 26 6 5.5441 3.7318 1.5579 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.7300 0.8241 -2.1143 33 1 5.0560 0.1599 -1.1299 34 1 3.5415 -1.5423 -1.8468 35 1 3.4327 -0.1216 1.6712 36 1 4.4687 2.2341 4.3826 37 1 4.2155 4.5870 5.0629 38 1 4.5530 7.4107 2.7394 39 1 3.9486 6.8858 4.3293 40 1 7.3232 9.9003 5.6095 41 1 5.6641 5.8444 1.2538 42 1 5.9180 3.4916 0.5736 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885158261.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:39 Heat of formation + Delta-G solvation = -145.399719 kcal Electronic energy + Delta-G solvation = -26263.243938 eV Core-core repulsion = 22335.570835 eV Total energy + Delta-G solvation = -3927.673103 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -38.96382 -38.80216 -37.17703 -36.72746 -35.76153 -34.82656 -33.71090 -31.77101 -30.68806 -29.89912 -28.00234 -27.11149 -25.48143 -23.53952 -22.49805 -21.47634 -20.77854 -19.58001 -18.14597 -17.52349 -17.15703 -16.93777 -16.82293 -16.31694 -15.75098 -15.40377 -15.17228 -14.74376 -14.45864 -14.35216 -14.27102 -13.87280 -13.38412 -13.19555 -12.88865 -12.77589 -12.70227 -12.64479 -12.04783 -11.94590 -11.91611 -11.80638 -11.74919 -11.58988 -11.42740 -10.98361 -10.95011 -10.55785 -10.27734 -10.13747 -10.06339 -9.78070 -9.65945 -9.54686 -8.73102 -8.67782 -8.48622 -6.20877 -4.22635 0.47413 1.22058 1.68783 3.01067 3.18008 3.26484 3.26965 3.50867 3.75977 4.03823 4.06856 4.28149 4.42980 4.46096 4.81905 4.98273 5.00335 5.06424 5.09709 5.14315 5.15452 5.18049 5.18982 5.30138 5.45961 5.53787 5.59126 5.69540 5.78600 5.83545 6.11894 6.20409 6.40306 6.66170 6.66873 6.77842 6.90799 6.98794 7.25306 7.26520 7.50866 7.56665 8.32023 8.82818 9.37191 10.91664 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.017931 B = 0.003058 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.161497 B = 9154.680461 C = 9914.834573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.056 3.944 4 C 0.160 3.840 5 H 0.109 0.891 6 C 0.059 3.941 7 O -0.542 6.542 8 N -1.104 6.104 9 S 2.696 3.304 10 O -0.964 6.964 11 O -0.963 6.963 12 C -0.702 4.702 13 C -0.020 4.020 14 C -0.142 4.142 15 C 0.031 3.969 16 C 0.006 3.994 17 C -0.521 4.521 18 H 0.075 0.925 19 C 0.072 3.928 20 N -0.894 5.894 21 Si 0.879 3.121 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.265 1.265 25 C -0.142 4.142 26 C -0.028 4.028 27 H 0.036 0.964 28 H 0.083 0.917 29 H 0.037 0.963 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.368 0.632 35 H 0.424 0.576 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.034 0.966 39 H 0.029 0.971 40 H 0.267 0.733 41 H 0.130 0.870 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.064 -16.785 -13.835 25.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.273 6.273 3 C -0.023 4.023 4 C 0.052 3.948 5 H 0.127 0.873 6 C -0.021 4.021 7 O -0.345 6.345 8 N -0.863 5.863 9 S 2.788 3.212 10 O -0.954 6.954 11 O -0.954 6.954 12 C -0.791 4.791 13 C -0.039 4.039 14 C -0.161 4.161 15 C 0.030 3.970 16 C -0.031 4.031 17 C -0.559 4.559 18 H 0.093 0.907 19 C -0.130 4.130 20 N -0.532 5.532 21 Si 0.706 3.294 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.190 1.190 25 C -0.161 4.161 26 C -0.048 4.048 27 H 0.054 0.946 28 H 0.102 0.898 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.213 0.787 35 H 0.260 0.740 36 H 0.150 0.850 37 H 0.148 0.852 38 H 0.052 0.948 39 H 0.047 0.953 40 H 0.077 0.923 41 H 0.148 0.852 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.268 -16.910 -13.185 24.704 hybrid contribution -1.093 1.328 -0.166 1.728 sum -13.361 -15.582 -13.350 24.486 Atomic orbital electron populations 1.22728 0.82088 1.02493 0.99496 1.88144 1.18258 1.25719 1.95154 1.22720 0.92392 0.86209 1.00929 1.20955 0.94230 0.95996 0.83574 0.87320 1.22641 0.96742 0.86105 0.96596 1.86717 1.68907 1.26079 1.52846 1.55482 1.43859 1.53024 1.33969 1.01704 0.72626 0.73784 0.73134 1.93557 1.56860 1.86976 1.57972 1.93573 1.85116 1.69993 1.46672 1.30441 1.20807 1.23108 1.04776 1.20785 0.92516 0.97431 0.93174 1.21237 1.02689 0.91945 1.00267 1.20707 0.86907 0.97655 0.91691 1.18986 0.98808 0.87892 0.97409 1.20821 0.97954 0.97885 1.39193 0.90651 1.24989 0.95853 0.97859 0.94325 1.69887 1.25994 1.17881 1.39393 0.86787 0.82985 0.80433 0.79186 1.20032 1.21054 1.18958 1.21216 1.01598 0.95937 0.97326 1.20793 0.93577 0.92573 0.97836 0.94553 0.89819 0.94483 0.92413 0.92351 0.93128 0.92063 0.78668 0.73991 0.85044 0.85217 0.94810 0.95253 0.92342 0.85205 0.85112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.35 -3.40 7.98 -58.58 -0.47 -3.86 16 3 C 0.06 0.47 5.73 37.16 0.21 0.68 16 4 C 0.16 1.47 3.06 -67.93 -0.21 1.26 16 5 H 0.11 0.85 7.22 -51.93 -0.37 0.48 16 6 C 0.06 0.51 6.88 37.16 0.26 0.77 16 7 O -0.54 -4.89 11.17 -58.58 -0.65 -5.54 16 8 N -1.10 -11.67 5.41 -4.89 -0.03 -11.70 16 9 S 2.70 36.85 5.65 -107.50 -0.61 36.24 16 10 O -0.96 -14.93 16.50 -57.17 -0.94 -15.87 16 11 O -0.96 -15.83 17.28 -57.17 -0.99 -16.82 16 12 C -0.70 -10.53 5.82 -39.58 -0.23 -10.76 16 13 C -0.02 -0.31 9.52 -39.58 -0.38 -0.69 16 14 C -0.14 -2.52 9.70 -39.58 -0.38 -2.91 16 15 C 0.03 0.60 5.07 -104.62 -0.53 0.07 16 16 C 0.01 0.14 4.17 -29.04 -0.12 0.01 16 17 C -0.52 -14.18 9.65 -34.44 -0.33 -14.51 16 18 H 0.08 2.27 7.98 -52.49 -0.42 1.85 16 19 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 20 N -0.89 -26.66 13.96 55.43 0.77 -25.88 16 21 Si 0.88 20.40 27.47 -169.99 -4.67 15.73 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.26 -5.80 6.54 56.52 0.37 -5.43 16 25 C -0.14 -2.45 9.70 -39.58 -0.38 -2.84 16 26 C -0.03 -0.43 8.89 -39.58 -0.35 -0.78 16 27 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.59 7.59 -51.93 -0.39 0.19 16 34 H 0.37 1.90 9.12 45.56 0.42 2.32 16 35 H 0.42 4.25 8.58 -34.46 -0.30 3.96 16 36 H 0.13 1.81 7.62 -52.49 -0.40 1.41 16 37 H 0.13 2.16 8.06 -52.49 -0.42 1.73 16 38 H 0.03 0.73 7.14 -51.93 -0.37 0.36 16 39 H 0.03 0.63 7.51 -51.93 -0.39 0.24 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.13 2.09 8.06 -52.49 -0.42 1.66 16 42 H 0.13 1.62 7.62 -52.48 -0.40 1.22 16 LS Contribution 364.50 15.07 5.49 5.49 Total: -1.00 -35.30 364.50 -8.70 -44.00 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.18 Total: 4.66 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: -1.44 Total: -26.45 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.75 Total: -37.58 kcal Atomic # 8 Polarization: -39.04 SS G_CDS: -3.05 Total: -42.09 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.67 Total: 15.73 kcal Atomic # 16 Polarization: 36.85 SS G_CDS: -0.61 Total: 36.24 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.30 -8.70 -44.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885158261.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.400 kcal (2) G-P(sol) polarization free energy of solvation -35.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds